data_6NKK
#
_model_server_result.job_id            55_N-kIkSGf4rUYHWpUBWA 
_model_server_result.datetime_utc      '2024-11-23 03:17:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    6NKK 
#
_exptl.entry_id    6NKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.96 
_cell.angle_gamma         90 
_cell.entry_id            6NKK 
_cell.length_a            209.586 
_cell.length_b            117.248 
_cell.length_c            64.809 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,K,L,M,N,S,T,U,V 1 1 
E,O,P,W 2 1,3 
F,Q,R 2 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 0 -117.248 0 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.984047 0 61.650988 
4 'crystal symmetry operation' 2_546 -x,y-1,-z+1 -1 0 0 0 1 0 0 0 -1 -19.984047 -117.248 61.650988 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6NKK 
_atom_sites.fract_transf_matrix[1][1]    0.004771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001546 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 801 801 NAP NAP . 
H 3 PM7 A 1 802 901 PM7 PM7 . 
I 2 NAP B 1 801 801 NAP NAP . 
J 3 PM7 B 1 802 901 PM7 PM7 . 
K 2 NAP C 1 801 801 NAP NAP . 
L 3 PM7 C 1 802 901 PM7 PM7 . 
M 2 NAP D 1 801 801 NAP NAP . 
N 3 PM7 D 1 802 901 PM7 PM7 . 
O 2 NAP E 1 801 801 NAP NAP . 
P 3 PM7 E 1 802 901 PM7 PM7 . 
Q 2 NAP F 1 801 801 NAP NAP . 
R 3 PM7 F 1 802 901 PM7 PM7 . 
S 4 HOH A 1 901 53 HOH HOH . 
S 4 HOH A 2 902 15 HOH HOH . 
S 4 HOH A 3 903 58 HOH HOH . 
S 4 HOH A 4 904 33 HOH HOH . 
S 4 HOH A 5 905 34 HOH HOH . 
S 4 HOH A 6 906 64 HOH HOH . 
S 4 HOH A 7 907 60 HOH HOH . 
S 4 HOH A 8 908 107 HOH HOH . 
S 4 HOH A 9 909 37 HOH HOH . 
S 4 HOH A 10 910 76 HOH HOH . 
S 4 HOH A 11 911 31 HOH HOH . 
S 4 HOH A 12 912 6 HOH HOH . 
S 4 HOH A 13 913 12 HOH HOH . 
S 4 HOH A 14 914 92 HOH HOH . 
S 4 HOH A 15 915 24 HOH HOH . 
S 4 HOH A 16 916 19 HOH HOH . 
S 4 HOH A 17 917 23 HOH HOH . 
S 4 HOH A 18 918 103 HOH HOH . 
S 4 HOH A 19 919 20 HOH HOH . 
S 4 HOH A 20 920 59 HOH HOH . 
S 4 HOH A 21 921 32 HOH HOH . 
S 4 HOH A 22 922 77 HOH HOH . 
S 4 HOH A 23 923 26 HOH HOH . 
S 4 HOH A 24 924 38 HOH HOH . 
S 4 HOH A 25 925 96 HOH HOH . 
S 4 HOH A 26 926 7 HOH HOH . 
S 4 HOH A 27 927 83 HOH HOH . 
S 4 HOH A 28 928 25 HOH HOH . 
S 4 HOH A 29 929 87 HOH HOH . 
S 4 HOH A 30 930 106 HOH HOH . 
S 4 HOH A 31 931 100 HOH HOH . 
S 4 HOH A 32 932 78 HOH HOH . 
T 4 HOH B 1 901 14 HOH HOH . 
T 4 HOH B 2 902 94 HOH HOH . 
T 4 HOH B 3 903 97 HOH HOH . 
T 4 HOH B 4 904 108 HOH HOH . 
T 4 HOH B 5 905 4 HOH HOH . 
T 4 HOH B 6 906 51 HOH HOH . 
T 4 HOH B 7 907 70 HOH HOH . 
T 4 HOH B 8 908 81 HOH HOH . 
T 4 HOH B 9 909 28 HOH HOH . 
T 4 HOH B 10 910 13 HOH HOH . 
T 4 HOH B 11 911 30 HOH HOH . 
T 4 HOH B 12 912 109 HOH HOH . 
T 4 HOH B 13 913 18 HOH HOH . 
T 4 HOH B 14 914 52 HOH HOH . 
T 4 HOH B 15 915 65 HOH HOH . 
T 4 HOH B 16 916 72 HOH HOH . 
T 4 HOH B 17 917 27 HOH HOH . 
T 4 HOH B 18 918 49 HOH HOH . 
T 4 HOH B 19 919 68 HOH HOH . 
T 4 HOH B 20 920 67 HOH HOH . 
T 4 HOH B 21 921 3 HOH HOH . 
T 4 HOH B 22 922 75 HOH HOH . 
T 4 HOH B 23 923 1 HOH HOH . 
T 4 HOH B 24 924 48 HOH HOH . 
T 4 HOH B 25 925 50 HOH HOH . 
T 4 HOH B 26 926 71 HOH HOH . 
T 4 HOH B 27 927 66 HOH HOH . 
T 4 HOH B 28 928 29 HOH HOH . 
T 4 HOH B 29 929 95 HOH HOH . 
T 4 HOH B 30 930 69 HOH HOH . 
T 4 HOH B 31 931 73 HOH HOH . 
T 4 HOH B 32 932 74 HOH HOH . 
T 4 HOH B 33 933 5 HOH HOH . 
T 4 HOH B 34 934 93 HOH HOH . 
T 4 HOH B 35 935 101 HOH HOH . 
T 4 HOH B 36 936 91 HOH HOH . 
U 4 HOH C 1 901 45 HOH HOH . 
U 4 HOH C 2 902 98 HOH HOH . 
U 4 HOH C 3 903 10 HOH HOH . 
U 4 HOH C 4 904 47 HOH HOH . 
U 4 HOH C 5 905 42 HOH HOH . 
U 4 HOH C 6 906 89 HOH HOH . 
U 4 HOH C 7 907 57 HOH HOH . 
U 4 HOH C 8 908 8 HOH HOH . 
U 4 HOH C 9 909 56 HOH HOH . 
U 4 HOH C 10 910 102 HOH HOH . 
U 4 HOH C 11 911 88 HOH HOH . 
U 4 HOH C 12 912 105 HOH HOH . 
U 4 HOH C 13 913 9 HOH HOH . 
U 4 HOH C 14 914 2 HOH HOH . 
U 4 HOH C 15 915 90 HOH HOH . 
U 4 HOH C 16 916 46 HOH HOH . 
U 4 HOH C 17 917 16 HOH HOH . 
U 4 HOH C 18 918 17 HOH HOH . 
U 4 HOH C 19 919 85 HOH HOH . 
U 4 HOH C 20 920 43 HOH HOH . 
U 4 HOH C 21 921 44 HOH HOH . 
U 4 HOH C 22 922 84 HOH HOH . 
V 4 HOH D 1 901 35 HOH HOH . 
V 4 HOH D 2 902 41 HOH HOH . 
V 4 HOH D 3 903 21 HOH HOH . 
V 4 HOH D 4 904 39 HOH HOH . 
V 4 HOH D 5 905 99 HOH HOH . 
V 4 HOH D 6 906 86 HOH HOH . 
V 4 HOH D 7 907 22 HOH HOH . 
V 4 HOH D 8 908 82 HOH HOH . 
V 4 HOH D 9 909 104 HOH HOH . 
V 4 HOH D 10 910 36 HOH HOH . 
V 4 HOH D 11 911 63 HOH HOH . 
V 4 HOH D 12 912 80 HOH HOH . 
V 4 HOH D 13 913 54 HOH HOH . 
V 4 HOH D 14 914 40 HOH HOH . 
V 4 HOH D 15 915 79 HOH HOH . 
V 4 HOH D 16 916 62 HOH HOH . 
V 4 HOH D 17 917 61 HOH HOH . 
V 4 HOH D 18 918 55 HOH HOH . 
W 4 HOH E 1 901 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . I 2 0.022 47.922 28.533 1 39.52 ? PA NAP 801 B 1 
HETATM 2 O O1A NAP . . . I 2 -0.04 49.06 27.744 1 34.66 ? O1A NAP 801 B 1 
HETATM 3 O O2A NAP . . . I 2 -1.061 47.39 29.16 1 57.33 ? O2A NAP 801 B 1 
HETATM 4 O O5B NAP . . . I 2 0.496 46.84 27.605 1 38.49 ? O5B NAP 801 B 1 
HETATM 5 C C5B NAP . . . I 2 -0.212 45.706 27.241 1 33.38 ? C5B NAP 801 B 1 
HETATM 6 C C4B NAP . . . I 2 0.141 45.299 25.826 1 36.85 ? C4B NAP 801 B 1 
HETATM 7 O O4B NAP . . . I 2 -0.058 43.928 25.756 1 40.7 ? O4B NAP 801 B 1 
HETATM 8 C C3B NAP . . . I 2 -0.862 45.818 24.839 1 44.78 ? C3B NAP 801 B 1 
HETATM 9 O O3B NAP . . . I 2 -0.259 45.837 23.595 1 45.28 ? O3B NAP 801 B 1 
HETATM 10 C C2B NAP . . . I 2 -1.956 44.796 24.93 1 44.09 ? C2B NAP 801 B 1 
HETATM 11 O O2B NAP . . . I 2 -2.874 44.869 23.881 1 60.45 ? O2B NAP 801 B 1 
HETATM 12 C C1B NAP . . . I 2 -1.098 43.583 24.886 1 44.45 ? C1B NAP 801 B 1 
HETATM 13 N N9A NAP . . . I 2 -1.827 42.406 25.287 1 42.77 ? N9A NAP 801 B 1 
HETATM 14 C C8A NAP . . . I 2 -2.352 42.256 26.426 1 37.91 ? C8A NAP 801 B 1 
HETATM 15 N N7A NAP . . . I 2 -2.979 41.11 26.486 1 38.95 ? N7A NAP 801 B 1 
HETATM 16 C C5A NAP . . . I 2 -2.843 40.518 25.374 1 34.86 ? C5A NAP 801 B 1 
HETATM 17 C C6A NAP . . . I 2 -3.273 39.293 24.772 1 38.86 ? C6A NAP 801 B 1 
HETATM 18 N N6A NAP . . . I 2 -3.978 38.405 25.379 1 41.36 ? N6A NAP 801 B 1 
HETATM 19 N N1A NAP . . . I 2 -2.93 39.057 23.553 1 40.42 ? N1A NAP 801 B 1 
HETATM 20 C C2A NAP . . . I 2 -2.19 39.902 22.868 1 44.89 ? C2A NAP 801 B 1 
HETATM 21 N N3A NAP . . . I 2 -1.796 41.037 23.366 1 40.47 ? N3A NAP 801 B 1 
HETATM 22 C C4A NAP . . . I 2 -2.083 41.392 24.576 1 35.03 ? C4A NAP 801 B 1 
HETATM 23 O O3 NAP . . . I 2 1.047 47.966 29.705 1 54.94 ? O3 NAP 801 B 1 
HETATM 24 P PN NAP . . . I 2 2.552 48.384 29.736 1 59.24 ? PN NAP 801 B 1 
HETATM 25 O O1N NAP . . . I 2 2.524 49.115 30.915 1 58.91 -1 O1N NAP 801 B 1 
HETATM 26 O O2N NAP . . . I 2 2.89 48.929 28.47 1 57.67 ? O2N NAP 801 B 1 
HETATM 27 O O5D NAP . . . I 2 3.232 47.088 30.111 1 44.87 ? O5D NAP 801 B 1 
HETATM 28 C C5D NAP . . . I 2 4.264 46.583 29.321 1 43.94 ? C5D NAP 801 B 1 
HETATM 29 C C4D NAP . . . I 2 4.983 45.457 29.981 1 40.96 ? C4D NAP 801 B 1 
HETATM 30 O O4D NAP . . . I 2 5.8 46.1 30.86 1 45.27 ? O4D NAP 801 B 1 
HETATM 31 C C3D NAP . . . I 2 4.066 44.61 30.777 1 36.39 ? C3D NAP 801 B 1 
HETATM 32 O O3D NAP . . . I 2 4.54 43.31 30.679 1 38.1 ? O3D NAP 801 B 1 
HETATM 33 C C2D NAP . . . I 2 4.273 45.115 32.139 1 38.38 ? C2D NAP 801 B 1 
HETATM 34 O O2D NAP . . . I 2 3.927 44.193 33.135 1 37.39 ? O2D NAP 801 B 1 
HETATM 35 C C1D NAP . . . I 2 5.722 45.447 32.034 1 44.4 ? C1D NAP 801 B 1 
HETATM 36 N N1N NAP . . . I 2 5.975 46.38 33.033 1 50.6 ? N1N NAP 801 B 1 
HETATM 37 C C2N NAP . . . I 2 5.402 47.56 33.126 1 49.59 ? C2N NAP 801 B 1 
HETATM 38 C C3N NAP . . . I 2 5.69 48.368 34.207 1 53.66 ? C3N NAP 801 B 1 
HETATM 39 C C7N NAP . . . I 2 5.085 49.71 34.422 1 55.66 ? C7N NAP 801 B 1 
HETATM 40 O O7N NAP . . . I 2 5.155 50.266 35.451 1 54.16 ? O7N NAP 801 B 1 
HETATM 41 N N7N NAP . . . I 2 4.481 50.247 33.441 1 60.46 ? N7N NAP 801 B 1 
HETATM 42 C C4N NAP . . . I 2 6.594 47.936 35.132 1 48.8 ? C4N NAP 801 B 1 
HETATM 43 C C5N NAP . . . I 2 7.169 46.712 34.975 1 45.81 ? C5N NAP 801 B 1 
HETATM 44 C C6N NAP . . . I 2 6.834 45.955 33.903 1 49.34 ? C6N NAP 801 B 1 
HETATM 45 P P2B NAP . . . I 2 -4.418 44.872 23.985 1 56.45 ? P2B NAP 801 B 1 
HETATM 46 O O1X NAP . . . I 2 -4.795 45.622 25.175 1 55.97 ? O1X NAP 801 B 1 
HETATM 47 O O2X NAP . . . I 2 -4.533 45.354 22.671 1 65.97 -1 O2X NAP 801 B 1 
HETATM 48 O O3X NAP . . . I 2 -4.891 43.562 24.05 1 60.02 ? O3X NAP 801 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#