data_6NKK
#
_model_server_result.job_id            tXjFw4BS3cH6YGY0nNVGNQ 
_model_server_result.datetime_utc      '2024-11-23 03:18:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":802}' 
#
_entry.id    6NKK 
#
_exptl.entry_id    6NKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.443 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.96 
_cell.angle_gamma         90 
_cell.entry_id            6NKK 
_cell.length_a            209.586 
_cell.length_b            117.248 
_cell.length_c            64.809 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,K,L,M,N,S,T,U,V 1 1 
E,O,P,W 2 1,3 
F,Q,R 2 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 0 -117.248 0 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.984047 0 61.650988 
4 'crystal symmetry operation' 2_546 -x,y-1,-z+1 -1 0 0 0 1 0 0 0 -1 -19.984047 -117.248 61.650988 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C21 H25 N3 O' 
_chem_comp.formula_weight    335.443 
_chem_comp.id                PM7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'premalbrancheamide E' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 PM7 doub 340 n y 
C10 C11 PM7 sing 341 n y 
C9 C8 PM7 sing 342 n y 
C11 C12 PM7 doub 343 n y 
C8 C7 PM7 doub 344 n y 
C12 C7 PM7 sing 345 n y 
C12 N1 PM7 sing 346 n y 
C7 C6 PM7 sing 347 n y 
N1 C13 PM7 sing 348 n y 
C6 C13 PM7 doub 349 n y 
C6 C5 PM7 sing 350 n n 
C13 C14 PM7 sing 351 n n 
C5 C4 PM7 sing 352 n n 
C17 C4 PM7 sing 353 n n 
C17 N2 PM7 sing 354 n n 
C15 C14 PM7 sing 355 n n 
C14 C16 PM7 sing 356 n n 
C14 C3 PM7 sing 357 n n 
C4 C3 PM7 sing 358 n n 
C4 N PM7 sing 359 n n 
C3 C2 PM7 sing 360 n n 
N2 C18 PM7 sing 361 n n 
N2 C1 PM7 sing 362 n n 
N C PM7 sing 363 n n 
C18 C19 PM7 sing 364 n n 
C2 C1 PM7 sing 365 n n 
C1 C PM7 sing 366 n n 
C1 C20 PM7 sing 367 n n 
C O PM7 doub 368 n n 
C19 C20 PM7 sing 369 n n 
N H1 PM7 sing 370 n n 
C10 H2 PM7 sing 371 n n 
C11 H3 PM7 sing 372 n n 
C15 H4 PM7 sing 373 n n 
C15 H5 PM7 sing 374 n n 
C15 H6 PM7 sing 375 n n 
C16 H7 PM7 sing 376 n n 
C16 H8 PM7 sing 377 n n 
C16 H9 PM7 sing 378 n n 
C17 H10 PM7 sing 379 n n 
C17 H11 PM7 sing 380 n n 
C18 H12 PM7 sing 381 n n 
C18 H13 PM7 sing 382 n n 
C19 H14 PM7 sing 383 n n 
C19 H15 PM7 sing 384 n n 
C2 H16 PM7 sing 385 n n 
C2 H17 PM7 sing 386 n n 
C20 H18 PM7 sing 387 n n 
C20 H19 PM7 sing 388 n n 
C3 H20 PM7 sing 389 n n 
C5 H21 PM7 sing 390 n n 
C5 H22 PM7 sing 391 n n 
C8 H23 PM7 sing 392 n n 
C9 H24 PM7 sing 393 n n 
N1 H25 PM7 sing 394 n n 
#
_atom_sites.entry_id                     6NKK 
_atom_sites.fract_transf_matrix[1][1]    0.004771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001546 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 801 801 NAP NAP . 
H 3 PM7 A 1 802 901 PM7 PM7 . 
I 2 NAP B 1 801 801 NAP NAP . 
J 3 PM7 B 1 802 901 PM7 PM7 . 
K 2 NAP C 1 801 801 NAP NAP . 
L 3 PM7 C 1 802 901 PM7 PM7 . 
M 2 NAP D 1 801 801 NAP NAP . 
N 3 PM7 D 1 802 901 PM7 PM7 . 
O 2 NAP E 1 801 801 NAP NAP . 
P 3 PM7 E 1 802 901 PM7 PM7 . 
Q 2 NAP F 1 801 801 NAP NAP . 
R 3 PM7 F 1 802 901 PM7 PM7 . 
S 4 HOH A 1 901 53 HOH HOH . 
S 4 HOH A 2 902 15 HOH HOH . 
S 4 HOH A 3 903 58 HOH HOH . 
S 4 HOH A 4 904 33 HOH HOH . 
S 4 HOH A 5 905 34 HOH HOH . 
S 4 HOH A 6 906 64 HOH HOH . 
S 4 HOH A 7 907 60 HOH HOH . 
S 4 HOH A 8 908 107 HOH HOH . 
S 4 HOH A 9 909 37 HOH HOH . 
S 4 HOH A 10 910 76 HOH HOH . 
S 4 HOH A 11 911 31 HOH HOH . 
S 4 HOH A 12 912 6 HOH HOH . 
S 4 HOH A 13 913 12 HOH HOH . 
S 4 HOH A 14 914 92 HOH HOH . 
S 4 HOH A 15 915 24 HOH HOH . 
S 4 HOH A 16 916 19 HOH HOH . 
S 4 HOH A 17 917 23 HOH HOH . 
S 4 HOH A 18 918 103 HOH HOH . 
S 4 HOH A 19 919 20 HOH HOH . 
S 4 HOH A 20 920 59 HOH HOH . 
S 4 HOH A 21 921 32 HOH HOH . 
S 4 HOH A 22 922 77 HOH HOH . 
S 4 HOH A 23 923 26 HOH HOH . 
S 4 HOH A 24 924 38 HOH HOH . 
S 4 HOH A 25 925 96 HOH HOH . 
S 4 HOH A 26 926 7 HOH HOH . 
S 4 HOH A 27 927 83 HOH HOH . 
S 4 HOH A 28 928 25 HOH HOH . 
S 4 HOH A 29 929 87 HOH HOH . 
S 4 HOH A 30 930 106 HOH HOH . 
S 4 HOH A 31 931 100 HOH HOH . 
S 4 HOH A 32 932 78 HOH HOH . 
T 4 HOH B 1 901 14 HOH HOH . 
T 4 HOH B 2 902 94 HOH HOH . 
T 4 HOH B 3 903 97 HOH HOH . 
T 4 HOH B 4 904 108 HOH HOH . 
T 4 HOH B 5 905 4 HOH HOH . 
T 4 HOH B 6 906 51 HOH HOH . 
T 4 HOH B 7 907 70 HOH HOH . 
T 4 HOH B 8 908 81 HOH HOH . 
T 4 HOH B 9 909 28 HOH HOH . 
T 4 HOH B 10 910 13 HOH HOH . 
T 4 HOH B 11 911 30 HOH HOH . 
T 4 HOH B 12 912 109 HOH HOH . 
T 4 HOH B 13 913 18 HOH HOH . 
T 4 HOH B 14 914 52 HOH HOH . 
T 4 HOH B 15 915 65 HOH HOH . 
T 4 HOH B 16 916 72 HOH HOH . 
T 4 HOH B 17 917 27 HOH HOH . 
T 4 HOH B 18 918 49 HOH HOH . 
T 4 HOH B 19 919 68 HOH HOH . 
T 4 HOH B 20 920 67 HOH HOH . 
T 4 HOH B 21 921 3 HOH HOH . 
T 4 HOH B 22 922 75 HOH HOH . 
T 4 HOH B 23 923 1 HOH HOH . 
T 4 HOH B 24 924 48 HOH HOH . 
T 4 HOH B 25 925 50 HOH HOH . 
T 4 HOH B 26 926 71 HOH HOH . 
T 4 HOH B 27 927 66 HOH HOH . 
T 4 HOH B 28 928 29 HOH HOH . 
T 4 HOH B 29 929 95 HOH HOH . 
T 4 HOH B 30 930 69 HOH HOH . 
T 4 HOH B 31 931 73 HOH HOH . 
T 4 HOH B 32 932 74 HOH HOH . 
T 4 HOH B 33 933 5 HOH HOH . 
T 4 HOH B 34 934 93 HOH HOH . 
T 4 HOH B 35 935 101 HOH HOH . 
T 4 HOH B 36 936 91 HOH HOH . 
U 4 HOH C 1 901 45 HOH HOH . 
U 4 HOH C 2 902 98 HOH HOH . 
U 4 HOH C 3 903 10 HOH HOH . 
U 4 HOH C 4 904 47 HOH HOH . 
U 4 HOH C 5 905 42 HOH HOH . 
U 4 HOH C 6 906 89 HOH HOH . 
U 4 HOH C 7 907 57 HOH HOH . 
U 4 HOH C 8 908 8 HOH HOH . 
U 4 HOH C 9 909 56 HOH HOH . 
U 4 HOH C 10 910 102 HOH HOH . 
U 4 HOH C 11 911 88 HOH HOH . 
U 4 HOH C 12 912 105 HOH HOH . 
U 4 HOH C 13 913 9 HOH HOH . 
U 4 HOH C 14 914 2 HOH HOH . 
U 4 HOH C 15 915 90 HOH HOH . 
U 4 HOH C 16 916 46 HOH HOH . 
U 4 HOH C 17 917 16 HOH HOH . 
U 4 HOH C 18 918 17 HOH HOH . 
U 4 HOH C 19 919 85 HOH HOH . 
U 4 HOH C 20 920 43 HOH HOH . 
U 4 HOH C 21 921 44 HOH HOH . 
U 4 HOH C 22 922 84 HOH HOH . 
V 4 HOH D 1 901 35 HOH HOH . 
V 4 HOH D 2 902 41 HOH HOH . 
V 4 HOH D 3 903 21 HOH HOH . 
V 4 HOH D 4 904 39 HOH HOH . 
V 4 HOH D 5 905 99 HOH HOH . 
V 4 HOH D 6 906 86 HOH HOH . 
V 4 HOH D 7 907 22 HOH HOH . 
V 4 HOH D 8 908 82 HOH HOH . 
V 4 HOH D 9 909 104 HOH HOH . 
V 4 HOH D 10 910 36 HOH HOH . 
V 4 HOH D 11 911 63 HOH HOH . 
V 4 HOH D 12 912 80 HOH HOH . 
V 4 HOH D 13 913 54 HOH HOH . 
V 4 HOH D 14 914 40 HOH HOH . 
V 4 HOH D 15 915 79 HOH HOH . 
V 4 HOH D 16 916 62 HOH HOH . 
V 4 HOH D 17 917 61 HOH HOH . 
V 4 HOH D 18 918 55 HOH HOH . 
W 4 HOH E 1 901 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PM7 . . . J 3 2.879 47.908 36.241 1 50.03 ? N PM7 802 B 1 
HETATM 2 C C PM7 . . . J 3 2.836 46.394 36.11 1 54.06 ? C PM7 802 B 1 
HETATM 3 O O PM7 . . . J 3 2.93 45.813 35.08 1 60.7 ? O PM7 802 B 1 
HETATM 4 C C1 PM7 . . . J 3 2.675 45.63 37.591 1 49.13 ? C1 PM7 802 B 1 
HETATM 5 C C10 PM7 . . . J 3 2.912 53.948 41.179 1 33.48 ? C10 PM7 802 B 1 
HETATM 6 C C11 PM7 . . . J 3 2.183 52.847 41.624 1 36.36 ? C11 PM7 802 B 1 
HETATM 7 C C12 PM7 . . . J 3 2.118 51.69 40.841 1 43.57 ? C12 PM7 802 B 1 
HETATM 8 C C13 PM7 . . . J 3 1.724 49.663 39.972 1 48.34 ? C13 PM7 802 B 1 
HETATM 9 C C14 PM7 . . . J 3 1.273 48.171 39.611 1 47.3 ? C14 PM7 802 B 1 
HETATM 10 C C15 PM7 . . . J 3 1.911 47.25 40.655 1 41.39 ? C15 PM7 802 B 1 
HETATM 11 C C16 PM7 . . . J 3 -0.238 48.108 39.82 1 49.24 ? C16 PM7 802 B 1 
HETATM 12 C C17 PM7 . . . J 3 4.239 47.49 38.093 1 51.78 ? C17 PM7 802 B 1 
HETATM 13 C C18 PM7 . . . J 3 5.014 45.223 37.68 1 47.71 ? C18 PM7 802 B 1 
HETATM 14 C C19 PM7 . . . J 3 4.263 43.836 37.249 1 50.48 ? C19 PM7 802 B 1 
HETATM 15 C C2 PM7 . . . J 3 1.51 46.164 38.176 1 47.71 ? C2 PM7 802 B 1 
HETATM 16 C C20 PM7 . . . J 3 2.76 44.103 37.471 1 46.46 ? C20 PM7 802 B 1 
HETATM 17 C C3 PM7 . . . J 3 1.533 47.666 38.215 1 46.55 ? C3 PM7 802 B 1 
HETATM 18 C C4 PM7 . . . J 3 2.942 48.273 37.543 1 49.73 ? C4 PM7 802 B 1 
HETATM 19 C C5 PM7 . . . J 3 3.059 49.754 37.693 1 51.94 ? C5 PM7 802 B 1 
HETATM 20 C C6 PM7 . . . J 3 2.561 50.413 39.064 1 47.92 ? C6 PM7 802 B 1 
HETATM 21 C C7 PM7 . . . J 3 2.788 51.641 39.613 1 43.09 ? C7 PM7 802 B 1 
HETATM 22 C C8 PM7 . . . J 3 3.522 52.745 39.17 1 41.21 ? C8 PM7 802 B 1 
HETATM 23 C C9 PM7 . . . J 3 3.586 53.897 39.951 1 35.28 ? C9 PM7 802 B 1 
HETATM 24 N N1 PM7 . . . J 3 1.464 50.449 41.039 1 49.47 ? N1 PM7 802 B 1 
HETATM 25 N N2 PM7 . . . J 3 3.979 46.079 38.287 1 49.99 ? N2 PM7 802 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#