data_6NLA # _model_server_result.job_id lnS4Fy9NvqcG9-vU_I-GGg _model_server_result.datetime_utc '2025-08-31 00:59:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":108}' # _entry.id 6NLA # _exptl.entry_id 6NLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NLA _cell.length_a 63.155 _cell.length_b 63.155 _cell.length_c 39.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A ND1 HIS 12 A HIS 12 1_555 C ZN ZN . A ZN 102 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc3 A OE2 GLU 19 A GLU 19 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc4 A OE2 GLU 27 A GLU 27 1_555 B ZN ZN . A ZN 101 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 A NE2 HIS 29 A HIS 29 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 A NE2 HIS 33 A HIS 33 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc7 A OH TYR 45 A TYR 45 1_555 I NA NA . A NA 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc8 A OD1 ASP 47 A ASP 47 1_555 I NA NA . A NA 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 F O1 GOL . A GOL 105 1_555 H NA NA . A NA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc10 H NA NA . A NA 107 1_555 J O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc11 H NA NA . A NA 107 1_555 J O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc12 I NA NA . A NA 108 1_555 J O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc13 I NA NA . A NA 108 1_555 J O HOH . A HOH 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NLA _atom_sites.fract_transf_matrix[1][1] 0.015834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN Zn . C 2 ZN A 1 102 2 ZN ZN . D 3 CL A 1 103 3 CL CL . E 3 CL A 1 104 4 CL CL . F 4 GOL A 1 105 6 GOL GOL . G 3 CL A 1 106 2 CL CL . H 5 NA A 1 107 72 NA NA . I 5 NA A 1 108 103 NA NA . J 6 HOH A 1 201 77 HOH HOH . J 6 HOH A 2 202 35 HOH HOH . J 6 HOH A 3 203 100 HOH HOH . J 6 HOH A 4 204 71 HOH HOH . J 6 HOH A 5 205 106 HOH HOH . J 6 HOH A 6 206 44 HOH HOH . J 6 HOH A 7 207 69 HOH HOH . J 6 HOH A 8 208 41 HOH HOH . J 6 HOH A 9 209 68 HOH HOH . J 6 HOH A 10 210 63 HOH HOH . J 6 HOH A 11 211 47 HOH HOH . J 6 HOH A 12 212 75 HOH HOH . J 6 HOH A 13 213 39 HOH HOH . J 6 HOH A 14 214 23 HOH HOH . J 6 HOH A 15 215 6 HOH HOH . J 6 HOH A 16 216 76 HOH HOH . J 6 HOH A 17 217 53 HOH HOH . J 6 HOH A 18 218 64 HOH HOH . J 6 HOH A 19 219 43 HOH HOH . J 6 HOH A 20 220 66 HOH HOH . J 6 HOH A 21 221 80 HOH HOH . J 6 HOH A 22 222 16 HOH HOH . J 6 HOH A 23 223 65 HOH HOH . J 6 HOH A 24 224 59 HOH HOH . J 6 HOH A 25 225 29 HOH HOH . J 6 HOH A 26 226 14 HOH HOH . J 6 HOH A 27 227 42 HOH HOH . J 6 HOH A 28 228 19 HOH HOH . J 6 HOH A 29 229 108 HOH HOH . J 6 HOH A 30 230 62 HOH HOH . J 6 HOH A 31 231 115 HOH HOH . J 6 HOH A 32 232 21 HOH HOH . J 6 HOH A 33 233 4 HOH HOH . J 6 HOH A 34 234 3 HOH HOH . J 6 HOH A 35 235 30 HOH HOH . J 6 HOH A 36 236 99 HOH HOH . J 6 HOH A 37 237 98 HOH HOH . J 6 HOH A 38 238 18 HOH HOH . J 6 HOH A 39 239 12 HOH HOH . J 6 HOH A 40 240 93 HOH HOH . J 6 HOH A 41 241 81 HOH HOH . J 6 HOH A 42 242 11 HOH HOH . J 6 HOH A 43 243 34 HOH HOH . J 6 HOH A 44 244 38 HOH HOH . J 6 HOH A 45 245 22 HOH HOH . J 6 HOH A 46 246 89 HOH HOH . J 6 HOH A 47 247 8 HOH HOH . J 6 HOH A 48 248 13 HOH HOH . J 6 HOH A 49 249 24 HOH HOH . J 6 HOH A 50 250 87 HOH HOH . J 6 HOH A 51 251 33 HOH HOH . J 6 HOH A 52 252 45 HOH HOH . J 6 HOH A 53 253 25 HOH HOH . J 6 HOH A 54 254 7 HOH HOH . J 6 HOH A 55 255 5 HOH HOH . J 6 HOH A 56 256 17 HOH HOH . J 6 HOH A 57 257 74 HOH HOH . J 6 HOH A 58 258 28 HOH HOH . J 6 HOH A 59 259 20 HOH HOH . J 6 HOH A 60 260 1 HOH HOH . J 6 HOH A 61 261 31 HOH HOH . J 6 HOH A 62 262 10 HOH HOH . J 6 HOH A 63 263 60 HOH HOH . J 6 HOH A 64 264 48 HOH HOH . J 6 HOH A 65 265 107 HOH HOH . J 6 HOH A 66 266 9 HOH HOH . J 6 HOH A 67 267 82 HOH HOH . J 6 HOH A 68 268 54 HOH HOH . J 6 HOH A 69 269 27 HOH HOH . J 6 HOH A 70 270 26 HOH HOH . J 6 HOH A 71 271 90 HOH HOH . J 6 HOH A 72 272 57 HOH HOH . J 6 HOH A 73 273 52 HOH HOH . J 6 HOH A 74 274 88 HOH HOH . J 6 HOH A 75 275 111 HOH HOH . J 6 HOH A 76 276 112 HOH HOH . J 6 HOH A 77 277 96 HOH HOH . J 6 HOH A 78 278 97 HOH HOH . J 6 HOH A 79 279 40 HOH HOH . J 6 HOH A 80 280 83 HOH HOH . J 6 HOH A 81 281 49 HOH HOH . J 6 HOH A 82 282 50 HOH HOH . J 6 HOH A 83 283 67 HOH HOH . J 6 HOH A 84 284 36 HOH HOH . J 6 HOH A 85 285 55 HOH HOH . J 6 HOH A 86 286 85 HOH HOH . J 6 HOH A 87 287 104 HOH HOH . J 6 HOH A 88 288 58 HOH HOH . J 6 HOH A 89 289 51 HOH HOH . J 6 HOH A 90 290 110 HOH HOH . J 6 HOH A 91 291 56 HOH HOH . J 6 HOH A 92 292 61 HOH HOH . J 6 HOH A 93 293 94 HOH HOH . J 6 HOH A 94 294 15 HOH HOH . J 6 HOH A 95 295 79 HOH HOH . J 6 HOH A 96 296 95 HOH HOH . J 6 HOH A 97 297 46 HOH HOH . J 6 HOH A 98 298 86 HOH HOH . J 6 HOH A 99 299 70 HOH HOH . J 6 HOH A 100 300 109 HOH HOH . J 6 HOH A 101 301 114 HOH HOH . J 6 HOH A 102 302 1 HOH HOH . J 6 HOH A 103 303 91 HOH HOH . J 6 HOH A 104 304 101 HOH HOH . J 6 HOH A 105 305 84 HOH HOH . J 6 HOH A 106 306 108 HOH HOH . J 6 HOH A 107 307 37 HOH HOH . J 6 HOH A 108 308 105 HOH HOH . J 6 HOH A 109 309 32 HOH HOH . J 6 HOH A 110 310 102 HOH HOH . J 6 HOH A 111 311 73 HOH HOH . J 6 HOH A 112 312 92 HOH HOH . J 6 HOH A 113 313 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 15.012 _atom_site.Cartn_y -9.748 _atom_site.Cartn_z 6.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 108 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #