data_6NLE # _model_server_result.job_id S3FCGnNFPfnD9nY46oPz1Q _model_server_result.datetime_utc '2025-08-31 12:53:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":609}' # _entry.id 6NLE # _exptl.entry_id 6NLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.72 _cell.angle_gamma 90 _cell.entry_id 6NLE _cell.length_a 149.54 _cell.length_b 86.14 _cell.length_c 81.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 17 A GLY 20 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 A O ALA 19 A ALA 22 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A O VAL 20 A VAL 23 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A OD1 ASN 24 A ASN 27 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 A O THR 251 A THR 254 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 A OG1 THR 251 A THR 254 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc7 A OD1 ASN 282 A ASN 286 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc8 A O ALA 347 A ALA 351 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 A OG1 THR 350 A THR 354 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 A OG SER 351 A SER 355 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc11 B O LEU . A LEU 601 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 423 n n C C2 TRS sing 424 n n C C3 TRS sing 425 n n C N TRS sing 426 n n C1 O1 TRS sing 427 n n C1 H11 TRS sing 428 n n C1 H12 TRS sing 429 n n C2 O2 TRS sing 430 n n C2 H21 TRS sing 431 n n C2 H22 TRS sing 432 n n C3 O3 TRS sing 433 n n C3 H31 TRS sing 434 n n C3 H32 TRS sing 435 n n N HN1 TRS sing 436 n n N HN2 TRS sing 437 n n N HN3 TRS sing 438 n n O1 HO1 TRS sing 439 n n O2 HO2 TRS sing 440 n n O3 HO3 TRS sing 441 n n # _atom_sites.entry_id 6NLE _atom_sites.fract_transf_matrix[1][1] 0.006687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEU A 1 601 1 LEU LEU . C 3 NA A 1 602 1 NA NA . D 3 NA A 1 603 2 NA NA . E 4 GOL A 1 604 1 GOL GOL . F 4 GOL A 1 605 3 GOL GOL . G 5 PEG A 1 606 4 PEG PEG . H 5 PEG A 1 607 5 PEG PEG . I 5 PEG A 1 608 6 PEG PEG . J 6 TRS A 1 609 1 TRS TRS . K 6 TRS A 1 610 4 TRS TRS . L 7 BOG A 1 611 1 BOG BOG . M 8 OCT A 1 612 1 OCT OCT . N 8 OCT A 1 613 2 OCT OCT . O 9 HOH A 1 701 7 HOH HOH . O 9 HOH A 2 702 16 HOH HOH . O 9 HOH A 3 703 103 HOH HOH . O 9 HOH A 4 704 104 HOH HOH . O 9 HOH A 5 705 26 HOH HOH . O 9 HOH A 6 706 55 HOH HOH . O 9 HOH A 7 707 71 HOH HOH . O 9 HOH A 8 708 5 HOH HOH . O 9 HOH A 9 709 89 HOH HOH . O 9 HOH A 10 710 18 HOH HOH . O 9 HOH A 11 711 93 HOH HOH . O 9 HOH A 12 712 11 HOH HOH . O 9 HOH A 13 713 39 HOH HOH . O 9 HOH A 14 714 101 HOH HOH . O 9 HOH A 15 715 102 HOH HOH . O 9 HOH A 16 716 32 HOH HOH . O 9 HOH A 17 717 2 HOH HOH . O 9 HOH A 18 718 49 HOH HOH . O 9 HOH A 19 719 45 HOH HOH . O 9 HOH A 20 720 10 HOH HOH . O 9 HOH A 21 721 6 HOH HOH . O 9 HOH A 22 722 28 HOH HOH . O 9 HOH A 23 723 21 HOH HOH . O 9 HOH A 24 724 3 HOH HOH . O 9 HOH A 25 725 54 HOH HOH . O 9 HOH A 26 726 37 HOH HOH . O 9 HOH A 27 727 34 HOH HOH . O 9 HOH A 28 728 43 HOH HOH . O 9 HOH A 29 729 14 HOH HOH . O 9 HOH A 30 730 41 HOH HOH . O 9 HOH A 31 731 46 HOH HOH . O 9 HOH A 32 732 17 HOH HOH . O 9 HOH A 33 733 80 HOH HOH . O 9 HOH A 34 734 56 HOH HOH . O 9 HOH A 35 735 30 HOH HOH . O 9 HOH A 36 736 42 HOH HOH . O 9 HOH A 37 737 12 HOH HOH . O 9 HOH A 38 738 58 HOH HOH . O 9 HOH A 39 739 15 HOH HOH . O 9 HOH A 40 740 61 HOH HOH . O 9 HOH A 41 741 1 HOH HOH . O 9 HOH A 42 742 44 HOH HOH . O 9 HOH A 43 743 70 HOH HOH . O 9 HOH A 44 744 88 HOH HOH . O 9 HOH A 45 745 65 HOH HOH . O 9 HOH A 46 746 79 HOH HOH . O 9 HOH A 47 747 48 HOH HOH . O 9 HOH A 48 748 57 HOH HOH . O 9 HOH A 49 749 68 HOH HOH . O 9 HOH A 50 750 63 HOH HOH . O 9 HOH A 51 751 53 HOH HOH . O 9 HOH A 52 752 78 HOH HOH . O 9 HOH A 53 753 69 HOH HOH . O 9 HOH A 54 754 96 HOH HOH . O 9 HOH A 55 755 97 HOH HOH . O 9 HOH A 56 756 72 HOH HOH . O 9 HOH A 57 757 86 HOH HOH . O 9 HOH A 58 758 59 HOH HOH . O 9 HOH A 59 759 47 HOH HOH . O 9 HOH A 60 760 4 HOH HOH . O 9 HOH A 61 761 92 HOH HOH . O 9 HOH A 62 762 98 HOH HOH . O 9 HOH A 63 763 50 HOH HOH . O 9 HOH A 64 764 9 HOH HOH . O 9 HOH A 65 765 77 HOH HOH . O 9 HOH A 66 766 67 HOH HOH . O 9 HOH A 67 767 91 HOH HOH . O 9 HOH A 68 768 84 HOH HOH . O 9 HOH A 69 769 27 HOH HOH . O 9 HOH A 70 770 75 HOH HOH . O 9 HOH A 71 771 90 HOH HOH . O 9 HOH A 72 772 76 HOH HOH . O 9 HOH A 73 773 74 HOH HOH . O 9 HOH A 74 774 51 HOH HOH . O 9 HOH A 75 775 81 HOH HOH . O 9 HOH A 76 776 64 HOH HOH . O 9 HOH A 77 777 73 HOH HOH . O 9 HOH A 78 778 66 HOH HOH . O 9 HOH A 79 779 19 HOH HOH . O 9 HOH A 80 780 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . J 6 -5.146 2.435 3.212 1 99.64 ? C TRS 609 A 1 HETATM 2 C C1 TRS . . . J 6 -4.915 0.953 2.943 1 100.15 ? C1 TRS 609 A 1 HETATM 3 C C2 TRS . . . J 6 -6.639 2.742 3.256 1 98.92 ? C2 TRS 609 A 1 HETATM 4 C C3 TRS . . . J 6 -4.487 3.278 2.128 1 98.33 ? C3 TRS 609 A 1 HETATM 5 N N TRS . . . J 6 -4.546 2.778 4.505 1 99.53 ? N TRS 609 A 1 HETATM 6 O O1 TRS . . . J 6 -5.731 0.183 3.797 1 99.07 ? O1 TRS 609 A 1 HETATM 7 O O2 TRS . . . J 6 -7.38 1.569 3.001 1 98.65 ? O2 TRS 609 A 1 HETATM 8 O O3 TRS . . . J 6 -5.216 3.141 0.929 1 96.58 ? O3 TRS 609 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #