data_6NM4
#
_model_server_result.job_id            cWKdUsDWXFZoKuV5zYDqOg 
_model_server_result.datetime_utc      '2024-11-04 22:43:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    6NM4 
#
_exptl.entry_id    6NM4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NM4 
_cell.length_a            38.026 
_cell.length_b            74.8 
_cell.length_c            141.435 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 11 A CYS 205 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc2 A SG CYS 14 A CYS 208 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc3 A SG CYS 22 A CYS 216 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 A ND1 HIS 25 A HIS 219 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 B SG CYS 11 B CYS 205 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 B SG CYS 14 B CYS 208 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc7 B SG CYS 22 B CYS 216 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc8 B ND1 HIS 25 B HIS 219 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 347 n n 
N HN1 SAM sing 348 n n 
N HN2 SAM sing 349 n n 
CA C SAM sing 350 n n 
CA CB SAM sing 351 n n 
CA HA SAM sing 352 n n 
C O SAM doub 353 n n 
C OXT SAM sing 354 n n 
CB CG SAM sing 355 n n 
CB HB1 SAM sing 356 n n 
CB HB2 SAM sing 357 n n 
CG SD SAM sing 358 n n 
CG HG1 SAM sing 359 n n 
CG HG2 SAM sing 360 n n 
SD CE SAM sing 361 n n 
SD C5' SAM sing 362 n n 
CE HE1 SAM sing 363 n n 
CE HE2 SAM sing 364 n n 
CE HE3 SAM sing 365 n n 
C5' C4' SAM sing 366 n n 
C5' "H5'1" SAM sing 367 n n 
C5' "H5'2" SAM sing 368 n n 
C4' O4' SAM sing 369 n n 
C4' C3' SAM sing 370 n n 
C4' H4' SAM sing 371 n n 
O4' C1' SAM sing 372 n n 
C3' O3' SAM sing 373 n n 
C3' C2' SAM sing 374 n n 
C3' H3' SAM sing 375 n n 
O3' HO3' SAM sing 376 n n 
C2' O2' SAM sing 377 n n 
C2' C1' SAM sing 378 n n 
C2' H2' SAM sing 379 n n 
O2' HO2' SAM sing 380 n n 
C1' N9 SAM sing 381 n n 
C1' H1' SAM sing 382 n n 
N9 C8 SAM sing 383 n y 
N9 C4 SAM sing 384 n y 
C8 N7 SAM doub 385 n y 
C8 H8 SAM sing 386 n n 
N7 C5 SAM sing 387 n y 
C5 C6 SAM sing 388 n y 
C5 C4 SAM doub 389 n y 
C6 N6 SAM sing 390 n n 
C6 N1 SAM doub 391 n y 
N6 HN61 SAM sing 392 n n 
N6 HN62 SAM sing 393 n n 
N1 C2 SAM sing 394 n y 
C2 N3 SAM doub 395 n y 
C2 H2 SAM sing 396 n n 
N3 C4 SAM sing 397 n y 
#
_atom_sites.entry_id                     6NM4 
_atom_sites.fract_transf_matrix[1][1]    0.026298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 400 ZN ZN . 
D 3 SAM A 1 402 401 SAM SAM . 
E 4 KS7 A 1 403 402 KS7 XXX . 
F 5 UNX A 1 404 1 UNX UNX . 
G 5 UNX A 1 405 5 UNX UNX . 
H 2 ZN B 1 401 400 ZN ZN . 
I 3 SAM B 1 402 401 SAM SAM . 
J 4 KS7 B 1 403 402 KS7 XXX . 
K 5 UNX B 1 404 21 UNX UNX . 
L 6 HOH A 1 501 173 HOH HOH . 
L 6 HOH A 2 502 7 HOH HOH . 
L 6 HOH A 3 503 180 HOH HOH . 
L 6 HOH A 4 504 16 HOH HOH . 
L 6 HOH A 5 505 17 HOH HOH . 
L 6 HOH A 6 506 11 HOH HOH . 
L 6 HOH A 7 507 172 HOH HOH . 
L 6 HOH A 8 508 6 HOH HOH . 
L 6 HOH A 9 509 174 HOH HOH . 
L 6 HOH A 10 510 43 HOH HOH . 
L 6 HOH A 11 511 186 HOH HOH . 
L 6 HOH A 12 512 3 HOH HOH . 
L 6 HOH A 13 513 183 HOH HOH . 
L 6 HOH A 14 514 18 HOH HOH . 
L 6 HOH A 15 515 196 HOH HOH . 
M 6 HOH B 1 501 170 HOH HOH . 
M 6 HOH B 2 502 187 HOH HOH . 
M 6 HOH B 3 503 13 HOH HOH . 
M 6 HOH B 4 504 14 HOH HOH . 
M 6 HOH B 5 505 193 HOH HOH . 
M 6 HOH B 6 506 9 HOH HOH . 
M 6 HOH B 7 507 8 HOH HOH . 
M 6 HOH B 8 508 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . I 3 -7.326 6.682 26.219 1 53.47 ? N SAM 402 B 1 
HETATM 2 C CA SAM . . . I 3 -6.305 6.884 25.212 1 55 ? CA SAM 402 B 1 
HETATM 3 C C SAM . . . I 3 -5.117 7.557 25.833 1 57.73 ? C SAM 402 B 1 
HETATM 4 O O SAM . . . I 3 -5.121 7.891 27.053 1 59.8 ? O SAM 402 B 1 
HETATM 5 O OXT SAM . . . I 3 -4.125 7.726 25.085 1 60 ? OXT SAM 402 B 1 
HETATM 6 C CB SAM . . . I 3 -6.833 7.671 24.003 1 53.76 ? CB SAM 402 B 1 
HETATM 7 C CG SAM . . . I 3 -7.627 6.799 23.023 1 53.56 ? CG SAM 402 B 1 
HETATM 8 S SD SAM . . . I 3 -6.716 5.706 22.094 1 54.25 ? SD SAM 402 B 1 
HETATM 9 C CE SAM . . . I 3 -6.995 6.012 20.482 1 52.98 ? CE SAM 402 B 1 
HETATM 10 C C5' SAM . . . I 3 -7.208 4.122 22.305 1 53.61 ? C5' SAM 402 B 1 
HETATM 11 C C4' SAM . . . I 3 -6.856 3.501 23.64 1 53.74 ? C4' SAM 402 B 1 
HETATM 12 O O4' SAM . . . I 3 -7.658 4.086 24.67 1 53.34 ? O4' SAM 402 B 1 
HETATM 13 C C3' SAM . . . I 3 -7.153 2.008 23.64 1 55 ? C3' SAM 402 B 1 
HETATM 14 O O3' SAM . . . I 3 -5.966 1.199 23.467 1 59.37 ? O3' SAM 402 B 1 
HETATM 15 C C2' SAM . . . I 3 -7.739 1.769 25.013 1 54.04 ? C2' SAM 402 B 1 
HETATM 16 O O2' SAM . . . I 3 -6.617 1.387 25.826 1 55.27 ? O2' SAM 402 B 1 
HETATM 17 C C1' SAM . . . I 3 -8.331 3.106 25.465 1 52.32 ? C1' SAM 402 B 1 
HETATM 18 N N9 SAM . . . I 3 -9.801 3.261 25.23 1 50.54 ? N9 SAM 402 B 1 
HETATM 19 C C8 SAM . . . I 3 -10.379 3.97 24.228 1 47.95 ? C8 SAM 402 B 1 
HETATM 20 N N7 SAM . . . I 3 -11.72 3.899 24.301 1 47.53 ? N7 SAM 402 B 1 
HETATM 21 C C5 SAM . . . I 3 -12.036 3.145 25.372 1 48.71 ? C5 SAM 402 B 1 
HETATM 22 C C6 SAM . . . I 3 -13.285 2.672 26.047 1 49.23 ? C6 SAM 402 B 1 
HETATM 23 N N6 SAM . . . I 3 -14.53 2.969 25.601 1 47.56 ? N6 SAM 402 B 1 
HETATM 24 N N1 SAM . . . I 3 -13.147 1.884 27.131 1 49.79 ? N1 SAM 402 B 1 
HETATM 25 C C2 SAM . . . I 3 -11.938 1.54 27.597 1 49.42 ? C2 SAM 402 B 1 
HETATM 26 N N3 SAM . . . I 3 -10.794 1.956 27.059 1 48.93 ? N3 SAM 402 B 1 
HETATM 27 C C4 SAM . . . I 3 -10.768 2.738 25.972 1 49.09 ? C4 SAM 402 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#