data_6NM5
#
_model_server_result.job_id            r0WjsBYyL7lemw8X0elUDg 
_model_server_result.datetime_utc      '2025-03-05 18:59:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nm5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BD","auth_seq_id":101}' 
#
_entry.id    6NM5 
#
_exptl.entry_id    6NM5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              200.127 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl ethyl hydrogen (S)-phosphate' 
_entity.pdbx_number_of_molecules    70 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NM5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    76-meric 
_pdbx_struct_assembly.oligomeric_count      76 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 YB N N 
? 3 ZB N N 
? 3 AC N N 
? 3 BC N N 
? 3 CC N N 
? 3 DC N N 
? 3 EC N N 
? 3 FC N N 
? 3 GC N N 
? 3 HC N N 
? 3 IC N N 
? 3 JC N N 
? 3 KC N N 
? 3 LC N N 
? 3 MC N N 
? 3 NC N N 
? 3 OC N N 
? 3 PC N N 
? 3 QC N N 
? 3 RC N N 
? 3 SC N N 
? 3 TC N N 
? 3 UC N N 
? 3 VC N N 
? 3 WC N N 
? 3 XC N N 
? 3 YC N N 
? 3 ZC N N 
? 3 AD N N 
? 3 BD N N 
? 3 CD N N 
? 3 DD N N 
? 3 ED N N 
? 3 FD N N 
? 3 GD N N 
? 3 HD N N 
? 3 ID N N 
? 3 JD N N 
? 3 KD N N 
? 3 LD N N 
? 3 MD N N 
? 3 ND N N 
? 3 OD N N 
? 3 PD N N 
? 3 QD N N 
? 3 RD N N 
? 3 SD N N 
? 3 TD N N 
? 3 UD N N 
? 3 VD N N 
? 3 WD N N 
? 3 XD N N 
? 3 YD N N 
? 3 ZD N N 
? 3 AE N N 
? 3 BE N N 
? 3 CE N N 
? 3 DE N N 
? 3 EE N N 
? 3 FE N N 
? 3 GE N N 
? 3 HE N N 
? 3 IE N N 
? 3 JE N N 
? 3 KE N N 
? 3 LE N N 
? 3 ME N N 
? 3 NE N N 
? 3 OE N N 
? 3 PE N N 
#
_chem_comp.formula           'C5 H13 O6 P' 
_chem_comp.formula_weight    200.127 
_chem_comp.id                KSV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl ethyl hydrogen (S)-phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C4 KSV sing 171 n n 
C4 C3 KSV sing 172 n n 
C4 C5 KSV sing 173 n n 
O3 P1 KSV doub 174 n n 
O6 C5 KSV sing 175 n n 
C3 O4 KSV sing 176 n n 
O2 P1 KSV sing 177 n n 
P1 O4 KSV sing 178 n n 
P1 O1 KSV sing 179 n n 
O1 C2 KSV sing 180 n n 
C2 C1 KSV sing 181 n n 
C2 H1 KSV sing 182 n n 
C2 H2 KSV sing 183 n n 
C3 H3 KSV sing 184 n n 
C3 H4 KSV sing 185 n n 
C4 H5 KSV sing 186 n n 
C5 H6 KSV sing 187 n n 
C5 H7 KSV sing 188 n n 
C1 H8 KSV sing 189 n n 
C1 H9 KSV sing 190 n n 
C1 H10 KSV sing 191 n n 
O2 H11 KSV sing 192 n n 
O5 H12 KSV sing 193 n n 
O6 H13 KSV sing 194 n n 
#
_atom_sites.entry_id                     6NM5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
YB 3 KSV 1A 1 101 101 KSV 6V6 . 
ZB 3 KSV 1B 1 101 101 KSV 6V6 . 
AC 3 KSV 1B 1 102 101 KSV 6V6 . 
BC 3 KSV 1C 1 101 101 KSV 6V6 . 
CC 3 KSV 1D 1 101 101 KSV 6V6 . 
DC 3 KSV 1F 1 101 101 KSV 6V6 . 
EC 3 KSV 1F 1 102 101 KSV 6V6 . 
FC 3 KSV 1G 1 101 101 KSV 6V6 . 
GC 3 KSV 1H 1 101 101 KSV 6V6 . 
HC 3 KSV 1I 1 101 101 KSV 6V6 . 
IC 3 KSV 1J 1 101 101 KSV 6V6 . 
JC 3 KSV 1J 1 102 101 KSV 6V6 . 
KC 3 KSV 1K 1 101 101 KSV 6V6 . 
LC 3 KSV 1K 1 102 101 KSV 6V6 . 
MC 3 KSV 1L 1 101 101 KSV 6V6 . 
NC 3 KSV 1M 1 101 101 KSV 6V6 . 
OC 3 KSV 1N 1 101 101 KSV 6V6 . 
PC 3 KSV 2B 1 101 101 KSV 6V6 . 
QC 3 KSV 2C 1 101 101 KSV 6V6 . 
RC 3 KSV 2D 1 101 101 KSV 6V6 . 
SC 3 KSV 2E 1 101 101 KSV 6V6 . 
TC 3 KSV 2E 1 102 101 KSV 6V6 . 
UC 3 KSV 2F 1 101 101 KSV 6V6 . 
VC 3 KSV 2G 1 101 101 KSV 6V6 . 
WC 3 KSV 2H 1 101 101 KSV 6V6 . 
XC 3 KSV 2I 1 101 101 KSV 6V6 . 
YC 3 KSV 2J 1 101 101 KSV 6V6 . 
ZC 3 KSV 2L 1 101 101 KSV 6V6 . 
AD 3 KSV 2M 1 101 101 KSV 6V6 . 
BD 3 KSV 2N 1 101 101 KSV 6V6 . 
CD 3 KSV 3A 1 101 101 KSV 6V6 . 
DD 3 KSV 3A 1 102 101 KSV 6V6 . 
ED 3 KSV 3B 1 101 101 KSV 6V6 . 
FD 3 KSV 3C 1 101 101 KSV 6V6 . 
GD 3 KSV 3D 1 101 101 KSV 6V6 . 
HD 3 KSV 3E 1 101 101 KSV 6V6 . 
ID 3 KSV 3G 1 101 101 KSV 6V6 . 
JD 3 KSV 3H 1 101 101 KSV 6V6 . 
KD 3 KSV 3I 1 101 101 KSV 6V6 . 
LD 3 KSV 3J 1 101 101 KSV 6V6 . 
MD 3 KSV 3K 1 101 101 KSV 6V6 . 
ND 3 KSV 3K 1 102 101 KSV 6V6 . 
OD 3 KSV 3L 1 101 101 KSV 6V6 . 
PD 3 KSV 3M 1 101 101 KSV 6V6 . 
QD 3 KSV 3N 1 101 101 KSV 6V6 . 
RD 3 KSV 4A 1 101 101 KSV 6V6 . 
SD 3 KSV 4B 1 101 101 KSV 6V6 . 
TD 3 KSV 4C 1 101 101 KSV 6V6 . 
UD 3 KSV 4D 1 101 101 KSV 6V6 . 
VD 3 KSV 4E 1 101 101 KSV 6V6 . 
WD 3 KSV 4F 1 101 101 KSV 6V6 . 
XD 3 KSV 4F 1 102 101 KSV 6V6 . 
YD 3 KSV 4G 1 101 101 KSV 6V6 . 
ZD 3 KSV 4H 1 101 101 KSV 6V6 . 
AE 3 KSV 4L 1 101 101 KSV 6V6 . 
BE 3 KSV 4M 1 101 101 KSV 6V6 . 
CE 3 KSV 4N 1 101 101 KSV 6V6 . 
DE 3 KSV 5A 1 101 101 KSV 6V6 . 
EE 3 KSV 5C 1 101 101 KSV 6V6 . 
FE 3 KSV 5D 1 101 101 KSV 6V6 . 
GE 3 KSV 5E 1 101 101 KSV 6V6 . 
HE 3 KSV 5G 1 101 101 KSV 6V6 . 
IE 3 KSV 5H 1 101 101 KSV 6V6 . 
JE 3 KSV 5I 1 101 101 KSV 6V6 . 
KE 3 KSV 5I 1 102 101 KSV 6V6 . 
LE 3 KSV 5J 1 101 101 KSV 6V6 . 
ME 3 KSV 5K 1 101 101 KSV 6V6 . 
NE 3 KSV 5L 1 101 101 KSV 6V6 . 
OE 3 KSV 5M 1 101 101 KSV 6V6 . 
PE 3 KSV 5N 1 101 101 KSV 6V6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 KSV . . . BD 3 392.163 189.546 355.341 1 203.71 ? C2 KSV 101 2N 1 
HETATM 2 C C3 KSV . . . BD 3 392.347 193.778 357.419 1 203.71 ? C3 KSV 101 2N 1 
HETATM 3 O O3 KSV . . . BD 3 392.31 192.262 354.634 1 203.71 ? O3 KSV 101 2N 1 
HETATM 4 C C4 KSV . . . BD 3 392.512 193.981 358.943 1 203.71 ? C4 KSV 101 2N 1 
HETATM 5 C C5 KSV . . . BD 3 391.444 193.136 359.684 1 203.71 ? C5 KSV 101 2N 1 
HETATM 6 P P1 KSV . . . BD 3 393.221 191.933 355.751 1 203.71 ? P1 KSV 101 2N 1 
HETATM 7 C C1 KSV . . . BD 3 390.912 189.696 356.218 1 203.71 ? C1 KSV 101 2N 1 
HETATM 8 O O1 KSV . . . BD 3 393.193 190.264 355.914 1 203.71 ? O1 KSV 101 2N 1 
HETATM 9 O O2 KSV . . . BD 3 394.651 192.367 355.859 1 203.71 ? O2 KSV 101 2N 1 
HETATM 10 O O4 KSV . . . BD 3 392.422 192.425 357.163 1 203.71 ? O4 KSV 101 2N 1 
HETATM 11 O O5 KSV . . . BD 3 393.786 193.642 359.378 1 203.71 ? O5 KSV 101 2N 1 
HETATM 12 O O6 KSV . . . BD 3 391.967 192.846 360.949 1 203.71 ? O6 KSV 101 2N 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#