data_6NM8 # _model_server_result.job_id oP7INY5ZY2CNpwESKMFZcg _model_server_result.datetime_utc '2024-12-27 12:13:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6NM8 # _exptl.entry_id 6NM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.512 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NM8 _cell.length_a 33.455 _cell.length_b 54.604 _cell.length_c 141.272 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 40 1_555 A SG CYS 98 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 24 B CYS 40 1_555 B SG CYS 98 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? # _chem_comp.formula 'C26 H29 N O5' _chem_comp.formula_weight 435.512 _chem_comp.id KSD _chem_comp.mon_nstd_flag . _chem_comp.name "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 O2 KSD sing 171 n n O2 C19 KSD sing 172 n n C19 C20 KSD doub 173 n y C19 C18 KSD sing 174 n y N1 C23 KSD sing 175 n n N1 C24 KSD sing 176 n n C20 C15 KSD sing 177 n y C13 C1 KSD sing 178 n n C26 C24 KSD sing 179 n n C23 C18 KSD sing 180 n n C18 C17 KSD doub 181 n y C24 C25 KSD sing 182 n n C14 O1 KSD sing 183 n n C14 C6 KSD sing 184 n n C10 C9 KSD doub 185 n y C10 C11 KSD sing 186 n y C9 C8 KSD sing 187 n y C11 C12 KSD doub 188 n y C15 O1 KSD sing 189 n n C15 C16 KSD doub 190 n y C1 C6 KSD doub 191 n y C1 C2 KSD sing 192 n y C8 C7 KSD doub 193 n y C12 C7 KSD sing 194 n y C7 C2 KSD sing 195 n n C6 C5 KSD sing 196 n y C17 C16 KSD sing 197 n y C17 O3 KSD sing 198 n n C25 O4 KSD doub 199 n n C25 O5 KSD sing 200 n n C2 C3 KSD doub 201 n y O3 C22 KSD sing 202 n n C5 C4 KSD doub 203 n y C3 C4 KSD sing 204 n y C4 H1 KSD sing 205 n n C14 H2 KSD sing 206 n n C14 H3 KSD sing 207 n n C5 H4 KSD sing 208 n n C11 H5 KSD sing 209 n n C8 H6 KSD sing 210 n n C9 H7 KSD sing 211 n n C10 H8 KSD sing 212 n n C12 H9 KSD sing 213 n n C13 H10 KSD sing 214 n n C13 H11 KSD sing 215 n n C13 H12 KSD sing 216 n n N1 H13 KSD sing 217 n n C3 H15 KSD sing 218 n n C16 H16 KSD sing 219 n n C20 H17 KSD sing 220 n n C21 H18 KSD sing 221 n n C21 H19 KSD sing 222 n n C21 H20 KSD sing 223 n n C22 H21 KSD sing 224 n n C22 H22 KSD sing 225 n n C22 H23 KSD sing 226 n n C23 H24 KSD sing 227 n n C23 H25 KSD sing 228 n n C24 H26 KSD sing 229 n n C26 H27 KSD sing 230 n n C26 H28 KSD sing 231 n n C26 H29 KSD sing 232 n n O5 H30 KSD sing 233 n n # _atom_sites.entry_id 6NM8 _atom_sites.fract_transf_matrix[1][1] 0.029891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KSD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id KSD _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 KSD . . . C 2 8.305 35.585 25.499 1 18.67 ? C4 KSD 201 A 1 HETATM 2 C C14 KSD . . . C 2 5.995 36.427 22.601 1 17.62 ? C14 KSD 201 A 1 HETATM 3 C C5 KSD . . . C 2 7.171 35.658 24.696 1 15.34 ? C5 KSD 201 A 1 HETATM 4 C C6 KSD . . . C 2 7.247 36.343 23.489 1 18.87 ? C6 KSD 201 A 1 HETATM 5 C C11 KSD . . . C 2 12.24 39.431 22.954 1 19.01 ? C11 KSD 201 A 1 HETATM 6 C C7 KSD . . . C 2 10.892 37.52 23.469 1 18.32 ? C7 KSD 201 A 1 HETATM 7 C C8 KSD . . . C 2 11.96 36.695 23.141 1 16.07 ? C8 KSD 201 A 1 HETATM 8 C C9 KSD . . . C 2 13.165 37.239 22.724 1 13.26 ? C9 KSD 201 A 1 HETATM 9 C C10 KSD . . . C 2 13.313 38.608 22.638 1 13.31 ? C10 KSD 201 A 1 HETATM 10 C C12 KSD . . . C 2 11.028 38.899 23.382 1 18.16 ? C12 KSD 201 A 1 HETATM 11 C C13 KSD . . . C 2 8.437 37.669 21.732 1 19.76 ? C13 KSD 201 A 1 HETATM 12 N N1 KSD . . . C 2 -0.511 39.24 21.632 1 42.99 ? N1 KSD 201 A 1 HETATM 13 C C3 KSD . . . C 2 9.496 36.184 25.094 1 20.26 ? C3 KSD 201 A 1 HETATM 14 C C1 KSD . . . C 2 8.431 36.947 23.078 1 25.84 ? C1 KSD 201 A 1 HETATM 15 C C15 KSD . . . C 2 3.618 36.544 23.047 1 25.15 ? C15 KSD 201 A 1 HETATM 16 C C16 KSD . . . C 2 2.648 36.743 24.022 1 24.23 ? C16 KSD 201 A 1 HETATM 17 C C17 KSD . . . C 2 1.37 37.156 23.661 1 34.84 ? C17 KSD 201 A 1 HETATM 18 C C18 KSD . . . C 2 1.057 37.359 22.324 1 29.09 ? C18 KSD 201 A 1 HETATM 19 C C19 KSD . . . C 2 2.017 37.139 21.347 1 31.39 ? C19 KSD 201 A 1 HETATM 20 C C2 KSD . . . C 2 9.568 36.874 23.895 1 15.59 ? C2 KSD 201 A 1 HETATM 21 C C20 KSD . . . C 2 3.302 36.736 21.705 1 23.25 ? C20 KSD 201 A 1 HETATM 22 C C21 KSD . . . C 2 2.099 36.455 19.044 1 29.42 ? C21 KSD 201 A 1 HETATM 23 C C22 KSD . . . C 2 0.861 37.672 25.925 1 32.66 ? C22 KSD 201 A 1 HETATM 24 C C23 KSD . . . C 2 -0.372 37.803 21.906 1 39.71 ? C23 KSD 201 A 1 HETATM 25 C C24 KSD . . . C 2 -1.624 39.739 22.441 1 49.06 ? C24 KSD 201 A 1 HETATM 26 C C25 KSD . . . C 2 -1.145 39.939 23.885 1 74.25 ? C25 KSD 201 A 1 HETATM 27 C C26 KSD . . . C 2 -2.205 41.04 21.897 1 36.5 ? C26 KSD 201 A 1 HETATM 28 O O1 KSD . . . C 2 4.916 36.123 23.46 1 23.71 ? O1 KSD 201 A 1 HETATM 29 O O2 KSD . . . C 2 1.656 37.368 20.002 1 42.13 ? O2 KSD 201 A 1 HETATM 30 O O3 KSD . . . C 2 0.386 37.379 24.644 1 39.89 ? O3 KSD 201 A 1 HETATM 31 O O4 KSD . . . C 2 0.099 40.092 24.169 1 53.34 ? O4 KSD 201 A 1 HETATM 32 O O5 KSD . . . C 2 -2.027 39.936 24.795 1 77.38 ? O5 KSD 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 207 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #