data_6NMI # _model_server_result.job_id AypNuOelLRxls4lx6PRA-w _model_server_result.datetime_utc '2024-11-02 13:30:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 6NMI # _exptl.entry_id 6NMI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NMI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N ? 10 L N N ? 10 M N N ? 10 N N N ? 10 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 255 F CYS 255 1_555 F SG CYS 257 F CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 B SG CYS 116 B CYS 116 1_555 I FE1 SF4 . B SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 B SG CYS 134 B CYS 134 1_555 I FE3 SF4 . B SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 B SG CYS 155 B CYS 155 1_555 I FE2 SF4 . B SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 B SG CYS 190 B CYS 190 1_555 I FE4 SF4 . B SF4 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 E SG CYS 270 E CYS 291 1_555 L ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc6 E SG CYS 273 E CYS 294 1_555 L ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc7 E SG CYS 284 E CYS 305 1_555 L ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 E SG CYS 287 E CYS 308 1_555 L ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 E SG CYS 324 E CYS 345 1_555 J ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 E SG CYS 327 E CYS 348 1_555 J ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc11 E SG CYS 339 E CYS 360 1_555 K ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc12 E SG CYS 342 E CYS 363 1_555 K ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc13 E SG CYS 347 E CYS 368 1_555 J ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc14 E SG CYS 350 E CYS 371 1_555 J ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 E SG CYS 361 E CYS 382 1_555 K ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc16 E SG CYS 364 E CYS 385 1_555 K ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc17 F SG CYS 268 F CYS 268 1_555 M ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc18 F SG CYS 271 F CYS 271 1_555 M ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc19 F SG CYS 282 F CYS 282 1_555 M ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc20 F SG CYS 285 F CYS 285 1_555 M ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc21 H SG CYS 6 H CYS 6 1_555 N ZN ZN . H ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc22 H SG CYS 9 H CYS 9 1_555 N ZN ZN . H ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc23 H SG CYS 26 H CYS 26 1_555 O ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc24 H ND1 HIS 28 H HIS 28 1_555 O ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc25 H SG CYS 31 H CYS 31 1_555 N ZN ZN . H ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc26 H SG CYS 34 H CYS 34 1_555 N ZN ZN . H ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc27 H SG CYS 46 H CYS 46 1_555 O ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc28 H SG CYS 49 H CYS 49 1_555 O ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NMI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 SF4 B 1 1000 1000 SF4 SF4 . J 10 ZN E 1 401 401 ZN ZN . K 10 ZN E 1 402 402 ZN ZN . L 10 ZN E 1 403 403 ZN ZN . M 10 ZN F 1 401 401 ZN ZN . N 10 ZN H 1 400 400 ZN ZN . O 10 ZN H 1 401 401 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 10 _atom_site.Cartn_x 139.412 _atom_site.Cartn_y 110.285 _atom_site.Cartn_z 177.406 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #