data_6NMZ # _model_server_result.job_id vZT2t0oEomZkW0vuf8U2pQ _model_server_result.datetime_utc '2024-11-25 09:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":304}' # _entry.id 6NMZ # _exptl.entry_id 6NMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.274 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R,2S)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NMZ _cell.length_a 56.07 _cell.length_b 106.17 _cell.length_c 152.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,U,V 1 1 C,D,M,N,O,P,Q,R,S,T,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 P N N ? 3 T N N # _chem_comp.formula 'C14 H16 O4' _chem_comp.formula_weight 248.274 _chem_comp.id KSP _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R,2S)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C07 KSP doub 208 n n O10 C06 KSP sing 209 n n O18 C09 KSP doub 210 n n C07 C11 KSP sing 211 n n C07 C05 KSP sing 212 n n C09 C08 KSP sing 213 n n C09 O16 KSP sing 214 n n C08 C12 KSP sing 215 n n C11 C12 KSP sing 216 n n C11 C13 KSP sing 217 n n C06 C05 KSP doub 218 n y C06 C01 KSP sing 219 n y C12 C15 KSP sing 220 n n C05 C04 KSP sing 221 n y C13 C14 KSP sing 222 n n C01 C02 KSP doub 223 n y C15 C14 KSP sing 224 n n C04 C03 KSP doub 225 n y C02 C03 KSP sing 226 n y C01 H1 KSP sing 227 n n C02 H2 KSP sing 228 n n C03 H3 KSP sing 229 n n C04 H4 KSP sing 230 n n C11 H5 KSP sing 231 n n C12 H6 KSP sing 232 n n C13 H7 KSP sing 233 n n C13 H8 KSP sing 234 n n C14 H9 KSP sing 235 n n C14 H10 KSP sing 236 n n C15 H11 KSP sing 237 n n C15 H12 KSP sing 238 n n C08 H13 KSP sing 239 n n C08 H14 KSP sing 240 n n O10 H15 KSP sing 241 n n O16 H16 KSP sing 242 n n # _atom_sites.entry_id 6NMZ _atom_sites.fract_transf_matrix[1][1] 0.017835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KSJ A 1 301 301 KSJ BRS . F 3 KSP A 1 302 401 KSP BSR . G 4 SO4 A 1 303 2 SO4 SO4 . H 4 SO4 A 1 304 6 SO4 SO4 . I 2 KSJ B 1 301 301 KSJ BRS . J 3 KSP B 1 302 401 KSP BSR . K 4 SO4 B 1 303 1 SO4 SO4 . L 4 SO4 B 1 304 7 SO4 SO4 . M 4 SO4 C 1 301 3 SO4 SO4 . N 4 SO4 C 1 302 5 SO4 SO4 . O 2 KSJ C 1 303 301 KSJ BRS . P 3 KSP C 1 304 401 KSP BSR . Q 4 SO4 D 1 301 4 SO4 SO4 . R 4 SO4 D 1 302 8 SO4 SO4 . S 2 KSJ D 1 303 301 KSJ BRS . T 3 KSP D 1 304 401 KSP BSR . U 5 HOH A 1 401 226 HOH HOH . U 5 HOH A 2 402 52 HOH HOH . U 5 HOH A 3 403 213 HOH HOH . U 5 HOH A 4 404 93 HOH HOH . U 5 HOH A 5 405 191 HOH HOH . U 5 HOH A 6 406 151 HOH HOH . U 5 HOH A 7 407 64 HOH HOH . U 5 HOH A 8 408 175 HOH HOH . U 5 HOH A 9 409 39 HOH HOH . U 5 HOH A 10 410 98 HOH HOH . U 5 HOH A 11 411 6 HOH HOH . U 5 HOH A 12 412 164 HOH HOH . U 5 HOH A 13 413 131 HOH HOH . U 5 HOH A 14 414 9 HOH HOH . U 5 HOH A 15 415 128 HOH HOH . U 5 HOH A 16 416 25 HOH HOH . U 5 HOH A 17 417 8 HOH HOH . U 5 HOH A 18 418 150 HOH HOH . U 5 HOH A 19 419 32 HOH HOH . U 5 HOH A 20 420 136 HOH HOH . U 5 HOH A 21 421 51 HOH HOH . U 5 HOH A 22 422 118 HOH HOH . U 5 HOH A 23 423 58 HOH HOH . U 5 HOH A 24 424 103 HOH HOH . U 5 HOH A 25 425 140 HOH HOH . U 5 HOH A 26 426 212 HOH HOH . U 5 HOH A 27 427 119 HOH HOH . U 5 HOH A 28 428 12 HOH HOH . U 5 HOH A 29 429 59 HOH HOH . U 5 HOH A 30 430 117 HOH HOH . U 5 HOH A 31 431 46 HOH HOH . U 5 HOH A 32 432 86 HOH HOH . U 5 HOH A 33 433 80 HOH HOH . U 5 HOH A 34 434 188 HOH HOH . U 5 HOH A 35 435 83 HOH HOH . U 5 HOH A 36 436 42 HOH HOH . U 5 HOH A 37 437 179 HOH HOH . U 5 HOH A 38 438 74 HOH HOH . U 5 HOH A 39 439 35 HOH HOH . U 5 HOH A 40 440 24 HOH HOH . U 5 HOH A 41 441 111 HOH HOH . U 5 HOH A 42 442 91 HOH HOH . U 5 HOH A 43 443 72 HOH HOH . U 5 HOH A 44 444 70 HOH HOH . U 5 HOH A 45 445 207 HOH HOH . U 5 HOH A 46 446 113 HOH HOH . U 5 HOH A 47 447 219 HOH HOH . U 5 HOH A 48 448 20 HOH HOH . U 5 HOH A 49 449 126 HOH HOH . U 5 HOH A 50 450 204 HOH HOH . U 5 HOH A 51 451 31 HOH HOH . U 5 HOH A 52 452 209 HOH HOH . U 5 HOH A 53 453 116 HOH HOH . U 5 HOH A 54 454 202 HOH HOH . U 5 HOH A 55 455 57 HOH HOH . U 5 HOH A 56 456 162 HOH HOH . U 5 HOH A 57 457 95 HOH HOH . U 5 HOH A 58 458 221 HOH HOH . U 5 HOH A 59 459 174 HOH HOH . U 5 HOH A 60 460 123 HOH HOH . U 5 HOH A 61 461 215 HOH HOH . U 5 HOH A 62 462 227 HOH HOH . U 5 HOH A 63 463 11 HOH HOH . U 5 HOH A 64 464 186 HOH HOH . U 5 HOH A 65 465 138 HOH HOH . U 5 HOH A 66 466 84 HOH HOH . U 5 HOH A 67 467 77 HOH HOH . U 5 HOH A 68 468 63 HOH HOH . U 5 HOH A 69 469 132 HOH HOH . U 5 HOH A 70 470 107 HOH HOH . U 5 HOH A 71 471 185 HOH HOH . V 5 HOH B 1 401 187 HOH HOH . V 5 HOH B 2 402 104 HOH HOH . V 5 HOH B 3 403 71 HOH HOH . V 5 HOH B 4 404 7 HOH HOH . V 5 HOH B 5 405 22 HOH HOH . V 5 HOH B 6 406 87 HOH HOH . V 5 HOH B 7 407 125 HOH HOH . V 5 HOH B 8 408 114 HOH HOH . V 5 HOH B 9 409 73 HOH HOH . V 5 HOH B 10 410 166 HOH HOH . V 5 HOH B 11 411 231 HOH HOH . V 5 HOH B 12 412 65 HOH HOH . V 5 HOH B 13 413 4 HOH HOH . V 5 HOH B 14 414 110 HOH HOH . V 5 HOH B 15 415 5 HOH HOH . V 5 HOH B 16 416 44 HOH HOH . V 5 HOH B 17 417 220 HOH HOH . V 5 HOH B 18 418 2 HOH HOH . V 5 HOH B 19 419 232 HOH HOH . V 5 HOH B 20 420 135 HOH HOH . V 5 HOH B 21 421 94 HOH HOH . V 5 HOH B 22 422 19 HOH HOH . V 5 HOH B 23 423 139 HOH HOH . V 5 HOH B 24 424 62 HOH HOH . V 5 HOH B 25 425 1 HOH HOH . V 5 HOH B 26 426 89 HOH HOH . V 5 HOH B 27 427 130 HOH HOH . V 5 HOH B 28 428 29 HOH HOH . V 5 HOH B 29 429 27 HOH HOH . V 5 HOH B 30 430 177 HOH HOH . V 5 HOH B 31 431 14 HOH HOH . V 5 HOH B 32 432 17 HOH HOH . V 5 HOH B 33 433 134 HOH HOH . V 5 HOH B 34 434 146 HOH HOH . V 5 HOH B 35 435 26 HOH HOH . V 5 HOH B 36 436 97 HOH HOH . V 5 HOH B 37 437 230 HOH HOH . V 5 HOH B 38 438 40 HOH HOH . V 5 HOH B 39 439 99 HOH HOH . V 5 HOH B 40 440 156 HOH HOH . V 5 HOH B 41 441 193 HOH HOH . V 5 HOH B 42 442 16 HOH HOH . V 5 HOH B 43 443 82 HOH HOH . V 5 HOH B 44 444 13 HOH HOH . V 5 HOH B 45 445 47 HOH HOH . V 5 HOH B 46 446 96 HOH HOH . V 5 HOH B 47 447 90 HOH HOH . V 5 HOH B 48 448 28 HOH HOH . V 5 HOH B 49 449 210 HOH HOH . V 5 HOH B 50 450 61 HOH HOH . V 5 HOH B 51 451 133 HOH HOH . V 5 HOH B 52 452 228 HOH HOH . V 5 HOH B 53 453 192 HOH HOH . V 5 HOH B 54 454 189 HOH HOH . V 5 HOH B 55 455 224 HOH HOH . V 5 HOH B 56 456 184 HOH HOH . V 5 HOH B 57 457 155 HOH HOH . V 5 HOH B 58 458 79 HOH HOH . V 5 HOH B 59 459 229 HOH HOH . V 5 HOH B 60 460 160 HOH HOH . V 5 HOH B 61 461 92 HOH HOH . V 5 HOH B 62 462 68 HOH HOH . V 5 HOH B 63 463 199 HOH HOH . V 5 HOH B 64 464 143 HOH HOH . W 5 HOH C 1 401 149 HOH HOH . W 5 HOH C 2 402 169 HOH HOH . W 5 HOH C 3 403 171 HOH HOH . W 5 HOH C 4 404 38 HOH HOH . W 5 HOH C 5 405 18 HOH HOH . W 5 HOH C 6 406 178 HOH HOH . W 5 HOH C 7 407 194 HOH HOH . W 5 HOH C 8 408 154 HOH HOH . W 5 HOH C 9 409 33 HOH HOH . W 5 HOH C 10 410 36 HOH HOH . W 5 HOH C 11 411 30 HOH HOH . W 5 HOH C 12 412 208 HOH HOH . W 5 HOH C 13 413 205 HOH HOH . W 5 HOH C 14 414 106 HOH HOH . W 5 HOH C 15 415 142 HOH HOH . W 5 HOH C 16 416 75 HOH HOH . W 5 HOH C 17 417 100 HOH HOH . W 5 HOH C 18 418 15 HOH HOH . W 5 HOH C 19 419 81 HOH HOH . W 5 HOH C 20 420 37 HOH HOH . W 5 HOH C 21 421 145 HOH HOH . W 5 HOH C 22 422 183 HOH HOH . W 5 HOH C 23 423 180 HOH HOH . W 5 HOH C 24 424 235 HOH HOH . W 5 HOH C 25 425 159 HOH HOH . W 5 HOH C 26 426 60 HOH HOH . W 5 HOH C 27 427 53 HOH HOH . W 5 HOH C 28 428 173 HOH HOH . W 5 HOH C 29 429 206 HOH HOH . W 5 HOH C 30 430 168 HOH HOH . W 5 HOH C 31 431 236 HOH HOH . W 5 HOH C 32 432 144 HOH HOH . W 5 HOH C 33 433 88 HOH HOH . W 5 HOH C 34 434 197 HOH HOH . W 5 HOH C 35 435 211 HOH HOH . W 5 HOH C 36 436 108 HOH HOH . W 5 HOH C 37 437 105 HOH HOH . W 5 HOH C 38 438 223 HOH HOH . W 5 HOH C 39 439 201 HOH HOH . W 5 HOH C 40 440 198 HOH HOH . W 5 HOH C 41 441 165 HOH HOH . W 5 HOH C 42 442 137 HOH HOH . W 5 HOH C 43 443 216 HOH HOH . W 5 HOH C 44 444 152 HOH HOH . W 5 HOH C 45 445 127 HOH HOH . W 5 HOH C 46 446 203 HOH HOH . X 5 HOH D 1 401 196 HOH HOH . X 5 HOH D 2 402 157 HOH HOH . X 5 HOH D 3 403 222 HOH HOH . X 5 HOH D 4 404 158 HOH HOH . X 5 HOH D 5 405 218 HOH HOH . X 5 HOH D 6 406 172 HOH HOH . X 5 HOH D 7 407 167 HOH HOH . X 5 HOH D 8 408 237 HOH HOH . X 5 HOH D 9 409 176 HOH HOH . X 5 HOH D 10 410 109 HOH HOH . X 5 HOH D 11 411 170 HOH HOH . X 5 HOH D 12 412 34 HOH HOH . X 5 HOH D 13 413 21 HOH HOH . X 5 HOH D 14 414 76 HOH HOH . X 5 HOH D 15 415 10 HOH HOH . X 5 HOH D 16 416 55 HOH HOH . X 5 HOH D 17 417 124 HOH HOH . X 5 HOH D 18 418 3 HOH HOH . X 5 HOH D 19 419 182 HOH HOH . X 5 HOH D 20 420 49 HOH HOH . X 5 HOH D 21 421 41 HOH HOH . X 5 HOH D 22 422 43 HOH HOH . X 5 HOH D 23 423 141 HOH HOH . X 5 HOH D 24 424 50 HOH HOH . X 5 HOH D 25 425 78 HOH HOH . X 5 HOH D 26 426 217 HOH HOH . X 5 HOH D 27 427 54 HOH HOH . X 5 HOH D 28 428 181 HOH HOH . X 5 HOH D 29 429 102 HOH HOH . X 5 HOH D 30 430 56 HOH HOH . X 5 HOH D 31 431 48 HOH HOH . X 5 HOH D 32 432 200 HOH HOH . X 5 HOH D 33 433 45 HOH HOH . X 5 HOH D 34 434 23 HOH HOH . X 5 HOH D 35 435 195 HOH HOH . X 5 HOH D 36 436 234 HOH HOH . X 5 HOH D 37 437 69 HOH HOH . X 5 HOH D 38 438 67 HOH HOH . X 5 HOH D 39 439 153 HOH HOH . X 5 HOH D 40 440 112 HOH HOH . X 5 HOH D 41 441 85 HOH HOH . X 5 HOH D 42 442 120 HOH HOH . X 5 HOH D 43 443 148 HOH HOH . X 5 HOH D 44 444 147 HOH HOH . X 5 HOH D 45 445 161 HOH HOH . X 5 HOH D 46 446 190 HOH HOH . X 5 HOH D 47 447 240 HOH HOH . X 5 HOH D 48 448 239 HOH HOH . X 5 HOH D 49 449 115 HOH HOH . X 5 HOH D 50 450 241 HOH HOH . X 5 HOH D 51 451 238 HOH HOH . X 5 HOH D 52 452 214 HOH HOH . X 5 HOH D 53 453 66 HOH HOH . X 5 HOH D 54 454 225 HOH HOH . X 5 HOH D 55 455 101 HOH HOH . X 5 HOH D 56 456 163 HOH HOH . X 5 HOH D 57 457 233 HOH HOH . X 5 HOH D 58 458 121 HOH HOH . X 5 HOH D 59 459 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 KSP . B . P 3 -16.944 7.709 18.174 0.2 58.27 ? C01 KSP 304 C 1 HETATM 2 C C02 KSP . B . P 3 -17.148 8.45 17.028 0.2 55.6 ? C02 KSP 304 C 1 HETATM 3 C C03 KSP . B . P 3 -17.642 9.736 17.118 0.2 60.62 ? C03 KSP 304 C 1 HETATM 4 C C04 KSP . B . P 3 -17.935 10.298 18.35 0.2 63.28 ? C04 KSP 304 C 1 HETATM 5 C C05 KSP . B . P 3 -17.729 9.556 19.5 0.2 64.31 ? C05 KSP 304 C 1 HETATM 6 C C06 KSP . B . P 3 -17.24 8.272 19.403 0.2 60.48 ? C06 KSP 304 C 1 HETATM 7 C C11 KSP . B . P 3 -18.213 11.559 21.279 0.2 64.46 ? C11 KSP 304 C 1 HETATM 8 C C12 KSP . B . P 3 -19.325 12.208 20.515 0.2 64.21 ? C12 KSP 304 C 1 HETATM 9 C C13 KSP . B . P 3 -16.959 12.389 21.028 0.2 65.1 ? C13 KSP 304 C 1 HETATM 10 C C14 KSP . B . P 3 -17.523 13.851 20.875 0.2 66.6 ? C14 KSP 304 C 1 HETATM 11 C C15 KSP . B . P 3 -19.078 13.706 20.641 0.2 66.14 ? C15 KSP 304 C 1 HETATM 12 C C07 KSP . B . P 3 -18.023 10.069 20.909 0.2 63.03 ? C07 KSP 304 C 1 HETATM 13 C C08 KSP . B . P 3 -20.704 11.83 21.084 0.2 65.22 ? C08 KSP 304 C 1 HETATM 14 C C09 KSP . B . P 3 -21.117 10.461 20.553 0.2 64.26 ? C09 KSP 304 C 1 HETATM 15 O O10 KSP . B . P 3 -17.051 7.56 20.589 0.2 63.71 ? O10 KSP 304 C 1 HETATM 16 O O16 KSP . B . P 3 -21.143 9.474 21.335 0.2 62.69 ? O16 KSP 304 C 1 HETATM 17 O O17 KSP . B . P 3 -18.125 9.273 21.779 0.2 65.79 ? O17 KSP 304 C 1 HETATM 18 O O18 KSP . B . P 3 -21.41 10.307 19.337 0.2 64.69 ? O18 KSP 304 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #