data_6NN5
#
_model_server_result.job_id            rbLQQmbxiFoIBx06vGDwSg 
_model_server_result.datetime_utc      '2024-11-26 12:00:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nn5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":604}' 
#
_entry.id    6NN5 
#
_exptl.entry_id    6NN5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NN5 
_cell.length_a            120.01 
_cell.length_b            204.624 
_cell.length_c            112.376 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NN5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 Y N N 
? 3 Z N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6NN5 
_atom_sites.fract_transf_matrix[1][1]    0.008333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 601 6 GOL GOL . 
F 2 GOL A 1 602 7 GOL GOL . 
G 2 GOL A 1 603 11 GOL GOL . 
H 2 GOL A 1 604 12 GOL GOL . 
I 3 EDO A 1 605 2 EDO EDO . 
J 3 EDO A 1 606 5 EDO EDO . 
K 3 EDO A 1 607 10 EDO EDO . 
L 2 GOL B 1 601 5 GOL GOL . 
M 2 GOL B 1 602 8 GOL GOL . 
N 3 EDO B 1 603 1 EDO EDO . 
O 3 EDO B 1 604 7 EDO EDO . 
P 2 GOL C 1 601 2 GOL GOL . 
Q 2 GOL C 1 602 4 GOL GOL . 
R 2 GOL C 1 603 9 GOL GOL . 
S 3 EDO C 1 604 4 EDO EDO . 
T 3 EDO C 1 605 6 EDO EDO . 
U 3 EDO C 1 606 9 EDO EDO . 
V 2 GOL D 1 601 1 GOL GOL . 
W 2 GOL D 1 602 3 GOL GOL . 
X 2 GOL D 1 603 10 GOL GOL . 
Y 3 EDO D 1 604 3 EDO EDO . 
Z 3 EDO D 1 605 8 EDO EDO . 
AA 4 HOH A 1 701 88 HOH HOH . 
AA 4 HOH A 2 702 181 HOH HOH . 
AA 4 HOH A 3 703 30 HOH HOH . 
AA 4 HOH A 4 704 13 HOH HOH . 
AA 4 HOH A 5 705 118 HOH HOH . 
AA 4 HOH A 6 706 140 HOH HOH . 
AA 4 HOH A 7 707 104 HOH HOH . 
AA 4 HOH A 8 708 70 HOH HOH . 
AA 4 HOH A 9 709 43 HOH HOH . 
AA 4 HOH A 10 710 12 HOH HOH . 
AA 4 HOH A 11 711 18 HOH HOH . 
AA 4 HOH A 12 712 16 HOH HOH . 
AA 4 HOH A 13 713 11 HOH HOH . 
AA 4 HOH A 14 714 103 HOH HOH . 
AA 4 HOH A 15 715 6 HOH HOH . 
AA 4 HOH A 16 716 26 HOH HOH . 
AA 4 HOH A 17 717 99 HOH HOH . 
AA 4 HOH A 18 718 61 HOH HOH . 
AA 4 HOH A 19 719 115 HOH HOH . 
AA 4 HOH A 20 720 106 HOH HOH . 
AA 4 HOH A 21 721 81 HOH HOH . 
AA 4 HOH A 22 722 134 HOH HOH . 
AA 4 HOH A 23 723 194 HOH HOH . 
AA 4 HOH A 24 724 5 HOH HOH . 
AA 4 HOH A 25 725 90 HOH HOH . 
AA 4 HOH A 26 726 4 HOH HOH . 
AA 4 HOH A 27 727 139 HOH HOH . 
AA 4 HOH A 28 728 128 HOH HOH . 
AA 4 HOH A 29 729 117 HOH HOH . 
AA 4 HOH A 30 730 57 HOH HOH . 
AA 4 HOH A 31 731 78 HOH HOH . 
AA 4 HOH A 32 732 121 HOH HOH . 
AA 4 HOH A 33 733 75 HOH HOH . 
AA 4 HOH A 34 734 85 HOH HOH . 
AA 4 HOH A 35 735 102 HOH HOH . 
AA 4 HOH A 36 736 77 HOH HOH . 
AA 4 HOH A 37 737 129 HOH HOH . 
AA 4 HOH A 38 738 27 HOH HOH . 
AA 4 HOH A 39 739 3 HOH HOH . 
AA 4 HOH A 40 740 119 HOH HOH . 
AA 4 HOH A 41 741 105 HOH HOH . 
AA 4 HOH A 42 742 136 HOH HOH . 
AA 4 HOH A 43 743 157 HOH HOH . 
AA 4 HOH A 44 744 190 HOH HOH . 
AA 4 HOH A 45 745 62 HOH HOH . 
AA 4 HOH A 46 746 111 HOH HOH . 
AA 4 HOH A 47 747 159 HOH HOH . 
AA 4 HOH A 48 748 145 HOH HOH . 
AA 4 HOH A 49 749 163 HOH HOH . 
AA 4 HOH A 50 750 185 HOH HOH . 
AA 4 HOH A 51 751 144 HOH HOH . 
BA 4 HOH B 1 701 166 HOH HOH . 
BA 4 HOH B 2 702 45 HOH HOH . 
BA 4 HOH B 3 703 186 HOH HOH . 
BA 4 HOH B 4 704 192 HOH HOH . 
BA 4 HOH B 5 705 37 HOH HOH . 
BA 4 HOH B 6 706 94 HOH HOH . 
BA 4 HOH B 7 707 114 HOH HOH . 
BA 4 HOH B 8 708 93 HOH HOH . 
BA 4 HOH B 9 709 108 HOH HOH . 
BA 4 HOH B 10 710 54 HOH HOH . 
BA 4 HOH B 11 711 149 HOH HOH . 
BA 4 HOH B 12 712 60 HOH HOH . 
BA 4 HOH B 13 713 182 HOH HOH . 
BA 4 HOH B 14 714 122 HOH HOH . 
BA 4 HOH B 15 715 130 HOH HOH . 
BA 4 HOH B 16 716 39 HOH HOH . 
BA 4 HOH B 17 717 50 HOH HOH . 
BA 4 HOH B 18 718 183 HOH HOH . 
BA 4 HOH B 19 719 7 HOH HOH . 
BA 4 HOH B 20 720 23 HOH HOH . 
BA 4 HOH B 21 721 146 HOH HOH . 
BA 4 HOH B 22 722 17 HOH HOH . 
BA 4 HOH B 23 723 22 HOH HOH . 
BA 4 HOH B 24 724 172 HOH HOH . 
BA 4 HOH B 25 725 126 HOH HOH . 
BA 4 HOH B 26 726 64 HOH HOH . 
BA 4 HOH B 27 727 170 HOH HOH . 
BA 4 HOH B 28 728 29 HOH HOH . 
BA 4 HOH B 29 729 66 HOH HOH . 
BA 4 HOH B 30 730 133 HOH HOH . 
BA 4 HOH B 31 731 165 HOH HOH . 
BA 4 HOH B 32 732 91 HOH HOH . 
BA 4 HOH B 33 733 95 HOH HOH . 
BA 4 HOH B 34 734 38 HOH HOH . 
BA 4 HOH B 35 735 53 HOH HOH . 
BA 4 HOH B 36 736 96 HOH HOH . 
BA 4 HOH B 37 737 67 HOH HOH . 
BA 4 HOH B 38 738 152 HOH HOH . 
BA 4 HOH B 39 739 97 HOH HOH . 
BA 4 HOH B 40 740 195 HOH HOH . 
BA 4 HOH B 41 741 73 HOH HOH . 
BA 4 HOH B 42 742 87 HOH HOH . 
BA 4 HOH B 43 743 168 HOH HOH . 
BA 4 HOH B 44 744 46 HOH HOH . 
BA 4 HOH B 45 745 155 HOH HOH . 
BA 4 HOH B 46 746 173 HOH HOH . 
BA 4 HOH B 47 747 153 HOH HOH . 
BA 4 HOH B 48 748 52 HOH HOH . 
BA 4 HOH B 49 749 127 HOH HOH . 
BA 4 HOH B 50 750 158 HOH HOH . 
BA 4 HOH B 51 751 167 HOH HOH . 
BA 4 HOH B 52 752 169 HOH HOH . 
CA 4 HOH C 1 701 110 HOH HOH . 
CA 4 HOH C 2 702 154 HOH HOH . 
CA 4 HOH C 3 703 36 HOH HOH . 
CA 4 HOH C 4 704 71 HOH HOH . 
CA 4 HOH C 5 705 14 HOH HOH . 
CA 4 HOH C 6 706 44 HOH HOH . 
CA 4 HOH C 7 707 171 HOH HOH . 
CA 4 HOH C 8 708 82 HOH HOH . 
CA 4 HOH C 9 709 107 HOH HOH . 
CA 4 HOH C 10 710 25 HOH HOH . 
CA 4 HOH C 11 711 68 HOH HOH . 
CA 4 HOH C 12 712 79 HOH HOH . 
CA 4 HOH C 13 713 51 HOH HOH . 
CA 4 HOH C 14 714 20 HOH HOH . 
CA 4 HOH C 15 715 124 HOH HOH . 
CA 4 HOH C 16 716 131 HOH HOH . 
CA 4 HOH C 17 717 58 HOH HOH . 
CA 4 HOH C 18 718 65 HOH HOH . 
CA 4 HOH C 19 719 33 HOH HOH . 
CA 4 HOH C 20 720 21 HOH HOH . 
CA 4 HOH C 21 721 63 HOH HOH . 
CA 4 HOH C 22 722 89 HOH HOH . 
CA 4 HOH C 23 723 151 HOH HOH . 
CA 4 HOH C 24 724 74 HOH HOH . 
CA 4 HOH C 25 725 32 HOH HOH . 
CA 4 HOH C 26 726 113 HOH HOH . 
CA 4 HOH C 27 727 184 HOH HOH . 
CA 4 HOH C 28 728 174 HOH HOH . 
CA 4 HOH C 29 729 142 HOH HOH . 
CA 4 HOH C 30 730 56 HOH HOH . 
CA 4 HOH C 31 731 191 HOH HOH . 
CA 4 HOH C 32 732 135 HOH HOH . 
CA 4 HOH C 33 733 175 HOH HOH . 
CA 4 HOH C 34 734 143 HOH HOH . 
CA 4 HOH C 35 735 193 HOH HOH . 
CA 4 HOH C 36 736 160 HOH HOH . 
CA 4 HOH C 37 737 76 HOH HOH . 
DA 4 HOH D 1 701 180 HOH HOH . 
DA 4 HOH D 2 702 80 HOH HOH . 
DA 4 HOH D 3 703 120 HOH HOH . 
DA 4 HOH D 4 704 35 HOH HOH . 
DA 4 HOH D 5 705 2 HOH HOH . 
DA 4 HOH D 6 706 15 HOH HOH . 
DA 4 HOH D 7 707 109 HOH HOH . 
DA 4 HOH D 8 708 24 HOH HOH . 
DA 4 HOH D 9 709 83 HOH HOH . 
DA 4 HOH D 10 710 42 HOH HOH . 
DA 4 HOH D 11 711 48 HOH HOH . 
DA 4 HOH D 12 712 177 HOH HOH . 
DA 4 HOH D 13 713 55 HOH HOH . 
DA 4 HOH D 14 714 19 HOH HOH . 
DA 4 HOH D 15 715 9 HOH HOH . 
DA 4 HOH D 16 716 116 HOH HOH . 
DA 4 HOH D 17 717 10 HOH HOH . 
DA 4 HOH D 18 718 8 HOH HOH . 
DA 4 HOH D 19 719 47 HOH HOH . 
DA 4 HOH D 20 720 147 HOH HOH . 
DA 4 HOH D 21 721 34 HOH HOH . 
DA 4 HOH D 22 722 31 HOH HOH . 
DA 4 HOH D 23 723 112 HOH HOH . 
DA 4 HOH D 24 724 84 HOH HOH . 
DA 4 HOH D 25 725 1 HOH HOH . 
DA 4 HOH D 26 726 92 HOH HOH . 
DA 4 HOH D 27 727 148 HOH HOH . 
DA 4 HOH D 28 728 123 HOH HOH . 
DA 4 HOH D 29 729 69 HOH HOH . 
DA 4 HOH D 30 730 179 HOH HOH . 
DA 4 HOH D 31 731 28 HOH HOH . 
DA 4 HOH D 32 732 100 HOH HOH . 
DA 4 HOH D 33 733 72 HOH HOH . 
DA 4 HOH D 34 734 41 HOH HOH . 
DA 4 HOH D 35 735 49 HOH HOH . 
DA 4 HOH D 36 736 40 HOH HOH . 
DA 4 HOH D 37 737 189 HOH HOH . 
DA 4 HOH D 38 738 125 HOH HOH . 
DA 4 HOH D 39 739 141 HOH HOH . 
DA 4 HOH D 40 740 178 HOH HOH . 
DA 4 HOH D 41 741 150 HOH HOH . 
DA 4 HOH D 42 742 86 HOH HOH . 
DA 4 HOH D 43 743 156 HOH HOH . 
DA 4 HOH D 44 744 98 HOH HOH . 
DA 4 HOH D 45 745 164 HOH HOH . 
DA 4 HOH D 46 746 138 HOH HOH . 
DA 4 HOH D 47 747 176 HOH HOH . 
DA 4 HOH D 48 748 188 HOH HOH . 
DA 4 HOH D 49 749 137 HOH HOH . 
DA 4 HOH D 50 750 101 HOH HOH . 
DA 4 HOH D 51 751 132 HOH HOH . 
DA 4 HOH D 52 752 187 HOH HOH . 
DA 4 HOH D 53 753 162 HOH HOH . 
DA 4 HOH D 54 754 196 HOH HOH . 
DA 4 HOH D 55 755 161 HOH HOH . 
DA 4 HOH D 56 756 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . S 3 -19.589 46.663 -85.449 1 39.12 ? C1 EDO 604 C 1 
HETATM 2 O O1 EDO . . . S 3 -19.562 45.769 -86.558 1 41.12 ? O1 EDO 604 C 1 
HETATM 3 C C2 EDO . . . S 3 -18.333 46.475 -84.607 1 38.94 ? C2 EDO 604 C 1 
HETATM 4 O O2 EDO . . . S 3 -18.655 46.741 -83.254 1 35.23 ? O2 EDO 604 C 1 
HETATM 5 H H11 EDO . . . S 3 -19.645 47.694 -85.805 1 47.03 ? H11 EDO 604 C 1 
HETATM 6 H H12 EDO . . . S 3 -20.475 46.47 -84.84 1 47.03 ? H12 EDO 604 C 1 
HETATM 7 H HO1 EDO . . . S 3 -20.379 45.86 -87.067 1 49.44 ? HO1 EDO 604 C 1 
HETATM 8 H H21 EDO . . . S 3 -17.961 45.453 -84.711 1 46.83 ? H21 EDO 604 C 1 
HETATM 9 H H22 EDO . . . S 3 -17.548 47.154 -84.947 1 46.83 ? H22 EDO 604 C 1 
HETATM 10 H HO2 EDO . . . S 3 -17.867 46.626 -82.706 1 42.38 ? HO2 EDO 604 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#