data_6NNX # _model_server_result.job_id 3-9c5vi7SpzjA7zc0E8FTw _model_server_result.datetime_utc '2024-11-24 14:11:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6NNX # _exptl.entry_id 6NNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NNX _cell.length_a 58.842 _cell.length_b 58.842 _cell.length_c 99.535 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -33.178333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 111 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.264 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 256 n n C1 C6 RET sing 257 n n C1 C16 RET sing 258 n n C1 C17 RET sing 259 n n C2 C3 RET sing 260 n n C2 H21 RET sing 261 n n C2 H22 RET sing 262 n n C3 C4 RET sing 263 n n C3 H31 RET sing 264 n n C3 H32 RET sing 265 n n C4 C5 RET sing 266 n n C4 H41 RET sing 267 n n C4 H42 RET sing 268 n n C5 C6 RET doub 269 n n C5 C18 RET sing 270 n n C6 C7 RET sing 271 n n C7 C8 RET doub 272 e n C7 H7 RET sing 273 n n C8 C9 RET sing 274 n n C8 H8 RET sing 275 n n C9 C10 RET doub 276 e n C9 C19 RET sing 277 n n C10 C11 RET sing 278 n n C10 H10 RET sing 279 n n C11 C12 RET doub 280 e n C11 H11 RET sing 281 n n C12 C13 RET sing 282 n n C12 H12 RET sing 283 n n C13 C14 RET doub 284 e n C13 C20 RET sing 285 n n C14 C15 RET sing 286 n n C14 H14 RET sing 287 n n C15 O1 RET doub 288 n n C15 H15 RET sing 289 n n C16 H161 RET sing 290 n n C16 H162 RET sing 291 n n C16 H163 RET sing 292 n n C17 H171 RET sing 293 n n C17 H172 RET sing 294 n n C17 H173 RET sing 295 n n C18 H181 RET sing 296 n n C18 H182 RET sing 297 n n C18 H183 RET sing 298 n n C19 H191 RET sing 299 n n C19 H192 RET sing 300 n n C19 H193 RET sing 301 n n C20 H201 RET sing 302 n n C20 H202 RET sing 303 n n C20 H203 RET sing 304 n n # _atom_sites.entry_id 6NNX _atom_sites.fract_transf_matrix[1][1] 0.016995 _atom_sites.fract_transf_matrix[1][2] 0.009812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 201 1 RET RET . C 3 HOH A 1 301 34 HOH HOH . C 3 HOH A 2 302 8 HOH HOH . C 3 HOH A 3 303 11 HOH HOH . C 3 HOH A 4 304 21 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 45 HOH HOH . C 3 HOH A 7 307 31 HOH HOH . C 3 HOH A 8 308 3 HOH HOH . C 3 HOH A 9 309 14 HOH HOH . C 3 HOH A 10 310 9 HOH HOH . C 3 HOH A 11 311 17 HOH HOH . C 3 HOH A 12 312 22 HOH HOH . C 3 HOH A 13 313 44 HOH HOH . C 3 HOH A 14 314 24 HOH HOH . C 3 HOH A 15 315 4 HOH HOH . C 3 HOH A 16 316 23 HOH HOH . C 3 HOH A 17 317 6 HOH HOH . C 3 HOH A 18 318 49 HOH HOH . C 3 HOH A 19 319 48 HOH HOH . C 3 HOH A 20 320 19 HOH HOH . C 3 HOH A 21 321 12 HOH HOH . C 3 HOH A 22 322 35 HOH HOH . C 3 HOH A 23 323 56 HOH HOH . C 3 HOH A 24 324 53 HOH HOH . C 3 HOH A 25 325 50 HOH HOH . C 3 HOH A 26 326 13 HOH HOH . C 3 HOH A 27 327 28 HOH HOH . C 3 HOH A 28 328 54 HOH HOH . C 3 HOH A 29 329 47 HOH HOH . C 3 HOH A 30 330 15 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 25 HOH HOH . C 3 HOH A 33 333 46 HOH HOH . C 3 HOH A 34 334 52 HOH HOH . C 3 HOH A 35 335 18 HOH HOH . C 3 HOH A 36 336 55 HOH HOH . C 3 HOH A 37 337 29 HOH HOH . C 3 HOH A 38 338 43 HOH HOH . C 3 HOH A 39 339 37 HOH HOH . C 3 HOH A 40 340 33 HOH HOH . C 3 HOH A 41 341 36 HOH HOH . C 3 HOH A 42 342 41 HOH HOH . C 3 HOH A 43 343 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 26.66 -6.764 -10.243 1 44.51 ? C1 RET 201 A 1 HETATM 2 C C2 RET . . . B 2 27.209 -6.007 -11.468 1 52.66 ? C2 RET 201 A 1 HETATM 3 C C3 RET . . . B 2 26.532 -4.679 -11.756 1 47.32 ? C3 RET 201 A 1 HETATM 4 C C4 RET . . . B 2 25.04 -4.887 -11.903 1 39.95 ? C4 RET 201 A 1 HETATM 5 C C5 RET . . . B 2 24.436 -5.684 -10.784 1 37.1 ? C5 RET 201 A 1 HETATM 6 C C6 RET . . . B 2 25.142 -6.579 -10.068 1 47.71 ? C6 RET 201 A 1 HETATM 7 C C7 RET . . . B 2 24.497 -7.371 -9.03 1 39.3 ? C7 RET 201 A 1 HETATM 8 C C8 RET . . . B 2 25 -7.986 -7.903 1 39.54 ? C8 RET 201 A 1 HETATM 9 C C9 RET . . . B 2 24.265 -8.748 -6.906 1 44.75 ? C9 RET 201 A 1 HETATM 10 C C10 RET . . . B 2 24.946 -9.546 -6.042 1 40.25 ? C10 RET 201 A 1 HETATM 11 C C11 RET . . . B 2 24.406 -10.369 -4.993 1 38.92 ? C11 RET 201 A 1 HETATM 12 C C12 RET . . . B 2 25.149 -11.121 -4.162 1 38.21 ? C12 RET 201 A 1 HETATM 13 C C13 RET . . . B 2 24.67 -11.974 -3.083 1 41.22 ? C13 RET 201 A 1 HETATM 14 C C14 RET . . . B 2 25.553 -12.769 -2.417 1 38.18 ? C14 RET 201 A 1 HETATM 15 C C15 RET . . . B 2 25.286 -13.683 -1.332 1 34.69 ? C15 RET 201 A 1 HETATM 16 C C16 RET . . . B 2 27.42 -6.263 -9.007 1 45.57 ? C16 RET 201 A 1 HETATM 17 C C17 RET . . . B 2 26.997 -8.241 -10.475 1 41.87 ? C17 RET 201 A 1 HETATM 18 C C18 RET . . . B 2 22.939 -5.549 -10.723 1 40.94 ? C18 RET 201 A 1 HETATM 19 C C19 RET . . . B 2 22.769 -8.596 -6.874 1 45.77 ? C19 RET 201 A 1 HETATM 20 C C20 RET . . . B 2 23.203 -11.932 -2.756 1 42.72 ? C20 RET 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #