data_6NO0 # _model_server_result.job_id C7EP968Fo78E1BCQ-Im5iQ _model_server_result.datetime_utc '2025-07-31 03:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6no0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6NO0 # _exptl.entry_id 6NO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NO0 _cell.length_a 92.203 _cell.length_b 116.981 _cell.length_c 127.161 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 151 A CYS 151 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 151 B CYS 151 1_555 B SG CYS 154 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O ASN 210 A ASN 210 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A OE1 GLU 216 A GLU 216 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 A OD1 ASP 220 A ASP 220 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 A OD2 ASP 228 A ASP 228 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 C O3B ADP . A ADP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 C O2A ADP . A ADP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 E MG MG . A MG 303 1_555 B OD1 ASP 220 B ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 E MG MG . A MG 303 1_555 B OD2 ASP 220 B ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc9 B O ASN 210 B ASN 210 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 B OD2 ASP 228 B ASP 228 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc11 F O1B ADP . B ADP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 F O2A ADP . B ADP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6NO0 _atom_sites.fract_transf_matrix[1][1] 0.010846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 MG A 1 302 2 MG MG . E 3 MG A 1 303 3 MG MG . F 2 ADP B 1 301 301 ADP ADP . G 3 MG B 1 302 1 MG MG . H 4 CL B 1 303 4 CL CL . I 5 HOH A 1 401 40 HOH HOH . I 5 HOH A 2 402 37 HOH HOH . I 5 HOH A 3 403 15 HOH HOH . I 5 HOH A 4 404 11 HOH HOH . I 5 HOH A 5 405 20 HOH HOH . I 5 HOH A 6 406 51 HOH HOH . I 5 HOH A 7 407 74 HOH HOH . I 5 HOH A 8 408 13 HOH HOH . I 5 HOH A 9 409 27 HOH HOH . I 5 HOH A 10 410 52 HOH HOH . I 5 HOH A 11 411 14 HOH HOH . I 5 HOH A 12 412 18 HOH HOH . I 5 HOH A 13 413 72 HOH HOH . I 5 HOH A 14 414 71 HOH HOH . I 5 HOH A 15 415 6 HOH HOH . I 5 HOH A 16 416 57 HOH HOH . I 5 HOH A 17 417 84 HOH HOH . I 5 HOH A 18 418 53 HOH HOH . I 5 HOH A 19 419 4 HOH HOH . I 5 HOH A 20 420 77 HOH HOH . I 5 HOH A 21 421 65 HOH HOH . I 5 HOH A 22 422 21 HOH HOH . I 5 HOH A 23 423 85 HOH HOH . I 5 HOH A 24 424 58 HOH HOH . I 5 HOH A 25 425 87 HOH HOH . I 5 HOH A 26 426 23 HOH HOH . I 5 HOH A 27 427 45 HOH HOH . I 5 HOH A 28 428 34 HOH HOH . I 5 HOH A 29 429 31 HOH HOH . I 5 HOH A 30 430 83 HOH HOH . I 5 HOH A 31 431 70 HOH HOH . I 5 HOH A 32 432 19 HOH HOH . I 5 HOH A 33 433 47 HOH HOH . I 5 HOH A 34 434 76 HOH HOH . I 5 HOH A 35 435 79 HOH HOH . I 5 HOH A 36 436 61 HOH HOH . I 5 HOH A 37 437 28 HOH HOH . I 5 HOH A 38 438 56 HOH HOH . I 5 HOH A 39 439 78 HOH HOH . J 5 HOH B 1 401 60 HOH HOH . J 5 HOH B 2 402 16 HOH HOH . J 5 HOH B 3 403 50 HOH HOH . J 5 HOH B 4 404 39 HOH HOH . J 5 HOH B 5 405 12 HOH HOH . J 5 HOH B 6 406 3 HOH HOH . J 5 HOH B 7 407 63 HOH HOH . J 5 HOH B 8 408 9 HOH HOH . J 5 HOH B 9 409 46 HOH HOH . J 5 HOH B 10 410 22 HOH HOH . J 5 HOH B 11 411 41 HOH HOH . J 5 HOH B 12 412 24 HOH HOH . J 5 HOH B 13 413 38 HOH HOH . J 5 HOH B 14 414 5 HOH HOH . J 5 HOH B 15 415 80 HOH HOH . J 5 HOH B 16 416 36 HOH HOH . J 5 HOH B 17 417 35 HOH HOH . J 5 HOH B 18 418 2 HOH HOH . J 5 HOH B 19 419 49 HOH HOH . J 5 HOH B 20 420 29 HOH HOH . J 5 HOH B 21 421 25 HOH HOH . J 5 HOH B 22 422 44 HOH HOH . J 5 HOH B 23 423 17 HOH HOH . J 5 HOH B 24 424 59 HOH HOH . J 5 HOH B 25 425 73 HOH HOH . J 5 HOH B 26 426 64 HOH HOH . J 5 HOH B 27 427 7 HOH HOH . J 5 HOH B 28 428 68 HOH HOH . J 5 HOH B 29 429 75 HOH HOH . J 5 HOH B 30 430 55 HOH HOH . J 5 HOH B 31 431 10 HOH HOH . J 5 HOH B 32 432 48 HOH HOH . J 5 HOH B 33 433 42 HOH HOH . J 5 HOH B 34 434 66 HOH HOH . J 5 HOH B 35 435 1 HOH HOH . J 5 HOH B 36 436 32 HOH HOH . J 5 HOH B 37 437 8 HOH HOH . J 5 HOH B 38 438 30 HOH HOH . J 5 HOH B 39 439 67 HOH HOH . J 5 HOH B 40 440 86 HOH HOH . J 5 HOH B 41 441 69 HOH HOH . J 5 HOH B 42 442 82 HOH HOH . J 5 HOH B 43 443 54 HOH HOH . J 5 HOH B 44 444 62 HOH HOH . J 5 HOH B 45 445 33 HOH HOH . J 5 HOH B 46 446 43 HOH HOH . J 5 HOH B 47 447 81 HOH HOH . J 5 HOH B 48 448 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 2 -2.965 28.46 0.491 0.86 104.23 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . F 2 -1.557 28.566 0.976 0.86 107.17 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . F 2 -3.059 28.287 -1.029 0.86 98.96 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . F 2 -3.822 29.669 0.883 0.86 112.56 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . F 2 -3.504 26.42 2.513 0.86 87.29 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . F 2 -3.391 24.961 2.305 0.86 77.79 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . F 2 -2.308 27.063 3.222 0.86 92.1 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . F 2 -3.687 27.19 1.132 0.86 96.17 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . F 2 -4.806 26.779 3.385 0.86 92.92 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . F 2 -5.163 28.086 3.879 0.86 98.92 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . F 2 -5.216 28.045 5.386 0.86 100.2 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . F 2 -6.285 27.181 5.817 0.86 96.86 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . F 2 -3.982 27.479 6.072 0.86 100.66 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . F 2 -2.975 28.476 6.2 0.86 101.16 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . F 2 -4.535 27.053 7.436 0.86 99.4 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . F 2 -4.507 28.125 8.372 0.86 101.39 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . F 2 -5.988 26.671 7.106 0.86 94.79 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . F 2 -6.246 25.234 7.103 0.86 84.71 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . F 2 -5.672 24.289 6.294 0.86 76.96 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . F 2 -6.1 23.068 6.509 0.86 71.02 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . F 2 -7.023 23.22 7.534 0.86 72.98 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . F 2 -7.837 22.3 8.223 0.86 67.58 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . F 2 -7.865 20.99 7.96 0.86 57.94 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . F 2 -8.643 22.781 9.195 0.86 71.01 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . F 2 -8.631 24.092 9.451 0.86 74.84 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . F 2 -7.91 25.052 8.866 0.86 80.19 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . F 2 -7.122 24.548 7.911 0.86 78.41 ? C4 ADP 301 B 1 HETATM 28 H HOB2 ADP . . . F 2 -2.323 28.643 -1.593 0.86 118.75 ? HOB2 ADP 301 B 1 HETATM 29 H HOB3 ADP . . . F 2 -3.761 30.61 0.57 0.86 135.07 ? HOB3 ADP 301 B 1 HETATM 30 H HOA2 ADP . . . F 2 -1.403 26.669 3.331 0.86 110.52 ? HOA2 ADP 301 B 1 HETATM 31 H "H5'1" ADP . . . F 2 -4.416 28.814 3.567 0.86 118.7 ? "H5'1" ADP 301 B 1 HETATM 32 H "H5'2" ADP . . . F 2 -6.14 28.372 3.494 0.86 118.7 ? "H5'2" ADP 301 B 1 HETATM 33 H H4' ADP . . . F 2 -5.485 29.027 5.772 0.86 120.24 ? H4' ADP 301 B 1 HETATM 34 H H3' ADP . . . F 2 -3.551 26.641 5.527 0.86 120.79 ? H3' ADP 301 B 1 HETATM 35 H HO3' ADP . . . F 2 -2.125 27.994 6.377 0.86 121.4 ? HO3' ADP 301 B 1 HETATM 36 H H2' ADP . . . F 2 -3.986 26.191 7.815 0.86 119.29 ? H2' ADP 301 B 1 HETATM 37 H HO2' ADP . . . F 2 -4.342 27.687 9.247 0.86 121.67 ? HO2' ADP 301 B 1 HETATM 38 H H1' ADP . . . F 2 -6.691 27.132 7.798 0.86 113.75 ? H1' ADP 301 B 1 HETATM 39 H H8 ADP . . . F 2 -4.926 24.527 5.537 0.86 92.36 ? H8 ADP 301 B 1 HETATM 40 H HN61 ADP . . . F 2 -7.278 20.602 7.229 0.86 69.53 ? HN61 ADP 301 B 1 HETATM 41 H HN62 ADP . . . F 2 -8.473 20.375 8.491 0.86 69.53 ? HN62 ADP 301 B 1 HETATM 42 H H2 ADP . . . F 2 -9.305 24.407 10.246 0.86 89.81 ? H2 ADP 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 42 #