data_6NO7 # _model_server_result.job_id z3klCnltTAFU-Ug-fh3GjA _model_server_result.datetime_utc '2025-04-10 22:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6no7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 6NO7 # _exptl.entry_id 6NO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NO7 _cell.length_a 139.778 _cell.length_b 184.811 _cell.length_c 183.406 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 E,F,G,H,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 C C PHE 138 C PHE 138 1_555 C N SEP 139 C SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 C C SEP 139 C SEP 139 1_555 C N GLU 140 C GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C TRP 196 C TRP 196 1_555 C N TPO 197 C TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 C C TPO 197 C TPO 197 1_555 C N LEU 198 C LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 C C VAL 337 C VAL 337 1_555 C N SEP 338 C SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C SEP 338 C SEP 338 1_555 C N ILE 339 C ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 E C PHE 138 E PHE 138 1_555 E N SEP 139 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 E C SEP 139 E SEP 139 1_555 E N GLU 140 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 E C TRP 196 E TRP 196 1_555 E N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 E C TPO 197 E TPO 197 1_555 E N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 E C VAL 337 E VAL 337 1_555 E N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 E C SEP 338 E SEP 338 1_555 E N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 G C PHE 138 G PHE 138 1_555 G N SEP 139 G SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 G C SEP 139 G SEP 139 1_555 G N GLU 140 G GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 G C TRP 196 G TRP 196 1_555 G N TPO 197 G TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 G C TPO 197 G TPO 197 1_555 G N LEU 198 G LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 G C VAL 337 G VAL 337 1_555 G N SEP 338 G SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 G C SEP 338 G SEP 338 1_555 G N ILE 339 G ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 E OD2 ASP 166 E ASP 166 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc2 E OD1 ASP 184 E ASP 184 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc3 E OD2 ASP 184 E ASP 184 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc4 I MG MG . E MG 401 1_555 K O2G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc5 I MG MG . E MG 401 1_555 K O3G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 I MG MG . E MG 401 1_555 K O2A ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc7 J MG MG . E MG 402 1_555 K O2G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc8 J MG MG . E MG 402 1_555 K O2B ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc9 G OD2 ASP 166 G ASP 166 1_555 M MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc10 G O GLU 170 G GLU 170 1_555 L MG MG . G MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc11 G OD2 ASP 184 G ASP 184 1_555 M MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 L MG MG . G MG 401 1_555 N O3G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 L MG MG . G MG 401 1_555 N O2G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc14 L MG MG . G MG 401 1_555 N O3B ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc15 L MG MG . G MG 401 1_555 N O2A ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc16 M MG MG . G MG 402 1_555 N O2G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc17 M MG MG . G MG 402 1_555 N O2B ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NO7 _atom_sites.fract_transf_matrix[1][1] 0.007154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG E 1 401 401 MG MG . J 3 MG E 1 402 402 MG MG . K 4 ATP E 1 403 400 ATP ATP . L 3 MG G 1 401 401 MG MG . M 3 MG G 1 402 402 MG MG . N 4 ATP G 1 403 400 ATP ATP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x -25.285 _atom_site.Cartn_y -7.611 _atom_site.Cartn_z -9.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 203.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #