data_6NO7 # _model_server_result.job_id ToQ5Ei1_ociTyoVZkJccKg _model_server_result.datetime_utc '2025-08-30 23:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6no7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 6NO7 # _exptl.entry_id 6NO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NO7 _cell.length_a 139.778 _cell.length_b 184.811 _cell.length_c 183.406 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 E,F,G,H,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 C C PHE 138 C PHE 138 1_555 C N SEP 139 C SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 C C SEP 139 C SEP 139 1_555 C N GLU 140 C GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C TRP 196 C TRP 196 1_555 C N TPO 197 C TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 C C TPO 197 C TPO 197 1_555 C N LEU 198 C LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 C C VAL 337 C VAL 337 1_555 C N SEP 338 C SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C SEP 338 C SEP 338 1_555 C N ILE 339 C ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 E C PHE 138 E PHE 138 1_555 E N SEP 139 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 E C SEP 139 E SEP 139 1_555 E N GLU 140 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 E C TRP 196 E TRP 196 1_555 E N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 E C TPO 197 E TPO 197 1_555 E N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 E C VAL 337 E VAL 337 1_555 E N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 E C SEP 338 E SEP 338 1_555 E N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 G C PHE 138 G PHE 138 1_555 G N SEP 139 G SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 G C SEP 139 G SEP 139 1_555 G N GLU 140 G GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 G C TRP 196 G TRP 196 1_555 G N TPO 197 G TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 G C TPO 197 G TPO 197 1_555 G N LEU 198 G LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 G C VAL 337 G VAL 337 1_555 G N SEP 338 G SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 G C SEP 338 G SEP 338 1_555 G N ILE 339 G ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 E OD2 ASP 166 E ASP 166 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc2 E OD1 ASP 184 E ASP 184 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc3 E OD2 ASP 184 E ASP 184 1_555 J MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc4 I MG MG . E MG 401 1_555 K O2G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc5 I MG MG . E MG 401 1_555 K O3G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 I MG MG . E MG 401 1_555 K O2A ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc7 J MG MG . E MG 402 1_555 K O2G ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc8 J MG MG . E MG 402 1_555 K O2B ATP . E ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc9 G OD2 ASP 166 G ASP 166 1_555 M MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc10 G O GLU 170 G GLU 170 1_555 L MG MG . G MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc11 G OD2 ASP 184 G ASP 184 1_555 M MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 L MG MG . G MG 401 1_555 N O3G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 L MG MG . G MG 401 1_555 N O2G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc14 L MG MG . G MG 401 1_555 N O3B ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc15 L MG MG . G MG 401 1_555 N O2A ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc16 M MG MG . G MG 402 1_555 N O2G ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc17 M MG MG . G MG 402 1_555 N O2B ATP . G ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6NO7 _atom_sites.fract_transf_matrix[1][1] 0.007154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG E 1 401 401 MG MG . J 3 MG E 1 402 402 MG MG . K 4 ATP E 1 403 400 ATP ATP . L 3 MG G 1 401 401 MG MG . M 3 MG G 1 402 402 MG MG . N 4 ATP G 1 403 400 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 4 51.954 -20.538 32.453 1 231.17 ? PG ATP 403 E 1 HETATM 2 O O1G ATP . . . K 4 51.624 -19.327 31.617 1 253.89 ? O1G ATP 403 E 1 HETATM 3 O O2G ATP . . . K 4 50.848 -20.977 33.38 1 175 ? O2G ATP 403 E 1 HETATM 4 O O3G ATP . . . K 4 52.599 -21.672 31.695 1 163.29 ? O3G ATP 403 E 1 HETATM 5 P PB ATP . . . K 4 52.904 -18.777 34.43 1 292.09 ? PB ATP 403 E 1 HETATM 6 O O1B ATP . . . K 4 53.06 -17.509 33.627 1 257.63 ? O1B ATP 403 E 1 HETATM 7 O O2B ATP . . . K 4 51.652 -18.973 35.247 1 316.51 ? O2B ATP 403 E 1 HETATM 8 O O3B ATP . . . K 4 53.117 -20.025 33.436 1 427.07 ? O3B ATP 403 E 1 HETATM 9 P PA ATP . . . K 4 54.636 -20.343 36.008 1 237.82 ? PA ATP 403 E 1 HETATM 10 O O1A ATP . . . K 4 55.023 -20.124 37.449 1 98.54 ? O1A ATP 403 E 1 HETATM 11 O O2A ATP . . . K 4 53.612 -21.407 35.695 1 232.29 ? O2A ATP 403 E 1 HETATM 12 O O3A ATP . . . K 4 54.169 -18.919 35.414 1 233.79 ? O3A ATP 403 E 1 HETATM 13 O O5' ATP . . . K 4 55.995 -20.66 35.208 1 252.53 ? O5' ATP 403 E 1 HETATM 14 C C5' ATP . . . K 4 56.005 -21.403 33.992 1 253.1 ? C5' ATP 403 E 1 HETATM 15 C C4' ATP . . . K 4 57.39 -22.017 33.854 1 272.31 ? C4' ATP 403 E 1 HETATM 16 O O4' ATP . . . K 4 58.146 -21.745 35.036 1 319.34 ? O4' ATP 403 E 1 HETATM 17 C C3' ATP . . . K 4 57.316 -23.523 33.698 1 226.24 ? C3' ATP 403 E 1 HETATM 18 O O3' ATP . . . K 4 57.768 -23.895 32.391 1 98.88 ? O3' ATP 403 E 1 HETATM 19 C C2' ATP . . . K 4 58.238 -24.098 34.757 1 285.6 ? C2' ATP 403 E 1 HETATM 20 O O2' ATP . . . K 4 59.314 -24.8 34.127 1 296.32 ? O2' ATP 403 E 1 HETATM 21 C C1' ATP . . . K 4 58.802 -22.918 35.521 1 288.24 ? C1' ATP 403 E 1 HETATM 22 N N9 ATP . . . K 4 58.524 -23.061 36.969 1 230.04 ? N9 ATP 403 E 1 HETATM 23 C C8 ATP . . . K 4 57.425 -22.587 37.579 1 231.58 ? C8 ATP 403 E 1 HETATM 24 N N7 ATP . . . K 4 57.45 -22.859 38.905 1 203.68 ? N7 ATP 403 E 1 HETATM 25 C C5 ATP . . . K 4 58.584 -23.526 39.164 1 141.1 ? C5 ATP 403 E 1 HETATM 26 C C6 ATP . . . K 4 59.222 -24.102 40.369 1 172.06 ? C6 ATP 403 E 1 HETATM 27 N N6 ATP . . . K 4 58.621 -24.023 41.581 1 170.15 ? N6 ATP 403 E 1 HETATM 28 N N1 ATP . . . K 4 60.415 -24.718 40.211 1 269.3 ? N1 ATP 403 E 1 HETATM 29 C C2 ATP . . . K 4 61.012 -24.806 39.008 1 301.55 ? C2 ATP 403 E 1 HETATM 30 N N3 ATP . . . K 4 60.492 -24.301 37.875 1 256.48 ? N3 ATP 403 E 1 HETATM 31 C C4 ATP . . . K 4 59.298 -23.658 37.885 1 153.19 ? C4 ATP 403 E 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #