data_6NPE # _model_server_result.job_id rd-51_gjOtJCwoe08kDpYw _model_server_result.datetime_utc '2024-10-10 23:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6npe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 6NPE # _exptl.entry_id 6NPE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NPE _cell.length_a 74.713 _cell.length_b 95.018 _cell.length_c 115.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 386 n y C1 C2 STI sing 387 n y C1 H11 STI sing 388 n n C6 C5 STI sing 389 n y C6 H61 STI sing 390 n n C5 C4 STI doub 391 n y C5 C7 STI sing 392 n y C4 N3 STI sing 393 n y C4 H41 STI sing 394 n n N3 C2 STI doub 395 n y C2 H21 STI sing 396 n n C7 C12 STI doub 397 n y C7 N8 STI sing 398 n y C12 C11 STI sing 399 n y C12 H121 STI sing 400 n n C11 N10 STI doub 401 n y C11 H111 STI sing 402 n n N10 C9 STI sing 403 n y C9 N8 STI doub 404 n y C9 N13 STI sing 405 n n N13 C14 STI sing 406 n n N13 H131 STI sing 407 n n C14 C19 STI doub 408 n y C14 C15 STI sing 409 n y C19 C18 STI sing 410 n y C19 C20 STI sing 411 n n C18 C17 STI doub 412 n y C18 H181 STI sing 413 n n C17 C16 STI sing 414 n y C17 H171 STI sing 415 n n C16 C15 STI doub 416 n y C16 N21 STI sing 417 n n C15 H151 STI sing 418 n n N21 C22 STI sing 419 n n N21 H211 STI sing 420 n n C22 C23 STI sing 421 n n C22 O29 STI doub 422 n n C23 C25 STI doub 423 n y C23 C29 STI sing 424 n y C25 C26 STI sing 425 n y C25 H251 STI sing 426 n n C26 C27 STI doub 427 n y C26 H261 STI sing 428 n n C27 C28 STI sing 429 n y C27 C46 STI sing 430 n n C28 C29 STI doub 431 n y C28 H281 STI sing 432 n n C29 H291 STI sing 433 n n C46 N48 STI sing 434 n n C46 H461 STI sing 435 n n C46 H462 STI sing 436 n n N48 C53 STI sing 437 n n N48 C49 STI sing 438 n n C53 C52 STI sing 439 n n C53 H531 STI sing 440 n n C53 H532 STI sing 441 n n C52 N51 STI sing 442 n n C52 H521 STI sing 443 n n C52 H522 STI sing 444 n n N51 C54 STI sing 445 n n N51 C50 STI sing 446 n n C54 H541 STI sing 447 n n C54 H542 STI sing 448 n n C54 H543 STI sing 449 n n C50 C49 STI sing 450 n n C50 H501 STI sing 451 n n C50 H502 STI sing 452 n n C49 H491 STI sing 453 n n C49 H492 STI sing 454 n n C20 H201 STI sing 455 n n C20 H202 STI sing 456 n n C20 H203 STI sing 457 n n # _atom_sites.entry_id 6NPE _atom_sites.fract_transf_matrix[1][1] 0.013385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 4 SO4 SO4 . D 2 SO4 A 1 602 6 SO4 SO4 . E 3 STI A 1 603 3 STI STI . F 4 KWD A 1 604 543 KWD UNL . G 2 SO4 B 1 601 3 SO4 SO4 . H 2 SO4 B 1 602 5 SO4 SO4 . I 3 STI B 1 603 4 STI STI . J 4 KWD B 1 604 543 KWD UNL . K 5 2PE B 1 605 170 2PE 2PE . L 6 HOH A 1 701 27 HOH HOH . L 6 HOH A 2 702 52 HOH HOH . L 6 HOH A 3 703 179 HOH HOH . L 6 HOH A 4 704 174 HOH HOH . L 6 HOH A 5 705 14 HOH HOH . L 6 HOH A 6 706 57 HOH HOH . L 6 HOH A 7 707 166 HOH HOH . L 6 HOH A 8 708 133 HOH HOH . L 6 HOH A 9 709 28 HOH HOH . L 6 HOH A 10 710 152 HOH HOH . L 6 HOH A 11 711 163 HOH HOH . L 6 HOH A 12 712 118 HOH HOH . L 6 HOH A 13 713 5 HOH HOH . L 6 HOH A 14 714 119 HOH HOH . L 6 HOH A 15 715 24 HOH HOH . L 6 HOH A 16 716 23 HOH HOH . L 6 HOH A 17 717 180 HOH HOH . L 6 HOH A 18 718 149 HOH HOH . L 6 HOH A 19 719 35 HOH HOH . L 6 HOH A 20 720 32 HOH HOH . L 6 HOH A 21 721 77 HOH HOH . L 6 HOH A 22 722 26 HOH HOH . L 6 HOH A 23 723 58 HOH HOH . L 6 HOH A 24 724 173 HOH HOH . L 6 HOH A 25 725 80 HOH HOH . L 6 HOH A 26 726 17 HOH HOH . L 6 HOH A 27 727 146 HOH HOH . L 6 HOH A 28 728 120 HOH HOH . L 6 HOH A 29 729 21 HOH HOH . L 6 HOH A 30 730 59 HOH HOH . L 6 HOH A 31 731 71 HOH HOH . L 6 HOH A 32 732 88 HOH HOH . L 6 HOH A 33 733 37 HOH HOH . L 6 HOH A 34 734 79 HOH HOH . L 6 HOH A 35 735 150 HOH HOH . L 6 HOH A 36 736 72 HOH HOH . L 6 HOH A 37 737 39 HOH HOH . L 6 HOH A 38 738 7 HOH HOH . L 6 HOH A 39 739 130 HOH HOH . L 6 HOH A 40 740 61 HOH HOH . L 6 HOH A 41 741 107 HOH HOH . L 6 HOH A 42 742 97 HOH HOH . L 6 HOH A 43 743 90 HOH HOH . L 6 HOH A 44 744 3 HOH HOH . L 6 HOH A 45 745 134 HOH HOH . L 6 HOH A 46 746 93 HOH HOH . L 6 HOH A 47 747 154 HOH HOH . L 6 HOH A 48 748 29 HOH HOH . L 6 HOH A 49 749 6 HOH HOH . L 6 HOH A 50 750 20 HOH HOH . L 6 HOH A 51 751 46 HOH HOH . L 6 HOH A 52 752 22 HOH HOH . L 6 HOH A 53 753 15 HOH HOH . L 6 HOH A 54 754 126 HOH HOH . L 6 HOH A 55 755 73 HOH HOH . L 6 HOH A 56 756 42 HOH HOH . L 6 HOH A 57 757 60 HOH HOH . L 6 HOH A 58 758 50 HOH HOH . L 6 HOH A 59 759 34 HOH HOH . L 6 HOH A 60 760 84 HOH HOH . L 6 HOH A 61 761 66 HOH HOH . L 6 HOH A 62 762 161 HOH HOH . L 6 HOH A 63 763 55 HOH HOH . L 6 HOH A 64 764 48 HOH HOH . L 6 HOH A 65 765 51 HOH HOH . L 6 HOH A 66 766 67 HOH HOH . L 6 HOH A 67 767 89 HOH HOH . L 6 HOH A 68 768 111 HOH HOH . L 6 HOH A 69 769 45 HOH HOH . L 6 HOH A 70 770 99 HOH HOH . L 6 HOH A 71 771 169 HOH HOH . L 6 HOH A 72 772 68 HOH HOH . L 6 HOH A 73 773 74 HOH HOH . L 6 HOH A 74 774 112 HOH HOH . L 6 HOH A 75 775 162 HOH HOH . L 6 HOH A 76 776 159 HOH HOH . L 6 HOH A 77 777 83 HOH HOH . L 6 HOH A 78 778 82 HOH HOH . L 6 HOH A 79 779 92 HOH HOH . L 6 HOH A 80 780 135 HOH HOH . L 6 HOH A 81 781 36 HOH HOH . L 6 HOH A 82 782 86 HOH HOH . L 6 HOH A 83 783 102 HOH HOH . L 6 HOH A 84 784 65 HOH HOH . L 6 HOH A 85 785 129 HOH HOH . L 6 HOH A 86 786 131 HOH HOH . L 6 HOH A 87 787 94 HOH HOH . L 6 HOH A 88 788 151 HOH HOH . L 6 HOH A 89 789 110 HOH HOH . L 6 HOH A 90 790 155 HOH HOH . L 6 HOH A 91 791 144 HOH HOH . L 6 HOH A 92 792 170 HOH HOH . L 6 HOH A 93 793 127 HOH HOH . L 6 HOH A 94 794 141 HOH HOH . L 6 HOH A 95 795 140 HOH HOH . L 6 HOH A 96 796 182 HOH HOH . L 6 HOH A 97 797 139 HOH HOH . M 6 HOH B 1 701 105 HOH HOH . M 6 HOH B 2 702 176 HOH HOH . M 6 HOH B 3 703 142 HOH HOH . M 6 HOH B 4 704 153 HOH HOH . M 6 HOH B 5 705 137 HOH HOH . M 6 HOH B 6 706 181 HOH HOH . M 6 HOH B 7 707 115 HOH HOH . M 6 HOH B 8 708 64 HOH HOH . M 6 HOH B 9 709 38 HOH HOH . M 6 HOH B 10 710 31 HOH HOH . M 6 HOH B 11 711 123 HOH HOH . M 6 HOH B 12 712 108 HOH HOH . M 6 HOH B 13 713 164 HOH HOH . M 6 HOH B 14 714 177 HOH HOH . M 6 HOH B 15 715 43 HOH HOH . M 6 HOH B 16 716 47 HOH HOH . M 6 HOH B 17 717 16 HOH HOH . M 6 HOH B 18 718 8 HOH HOH . M 6 HOH B 19 719 4 HOH HOH . M 6 HOH B 20 720 121 HOH HOH . M 6 HOH B 21 721 40 HOH HOH . M 6 HOH B 22 722 75 HOH HOH . M 6 HOH B 23 723 9 HOH HOH . M 6 HOH B 24 724 113 HOH HOH . M 6 HOH B 25 725 171 HOH HOH . M 6 HOH B 26 726 145 HOH HOH . M 6 HOH B 27 727 33 HOH HOH . M 6 HOH B 28 728 19 HOH HOH . M 6 HOH B 29 729 2 HOH HOH . M 6 HOH B 30 730 109 HOH HOH . M 6 HOH B 31 731 44 HOH HOH . M 6 HOH B 32 732 62 HOH HOH . M 6 HOH B 33 733 10 HOH HOH . M 6 HOH B 34 734 136 HOH HOH . M 6 HOH B 35 735 132 HOH HOH . M 6 HOH B 36 736 172 HOH HOH . M 6 HOH B 37 737 157 HOH HOH . M 6 HOH B 38 738 13 HOH HOH . M 6 HOH B 39 739 41 HOH HOH . M 6 HOH B 40 740 175 HOH HOH . M 6 HOH B 41 741 138 HOH HOH . M 6 HOH B 42 742 53 HOH HOH . M 6 HOH B 43 743 125 HOH HOH . M 6 HOH B 44 744 12 HOH HOH . M 6 HOH B 45 745 69 HOH HOH . M 6 HOH B 46 746 25 HOH HOH . M 6 HOH B 47 747 70 HOH HOH . M 6 HOH B 48 748 49 HOH HOH . M 6 HOH B 49 749 117 HOH HOH . M 6 HOH B 50 750 30 HOH HOH . M 6 HOH B 51 751 18 HOH HOH . M 6 HOH B 52 752 124 HOH HOH . M 6 HOH B 53 753 147 HOH HOH . M 6 HOH B 54 754 104 HOH HOH . M 6 HOH B 55 755 1 HOH HOH . M 6 HOH B 56 756 54 HOH HOH . M 6 HOH B 57 757 101 HOH HOH . M 6 HOH B 58 758 160 HOH HOH . M 6 HOH B 59 759 76 HOH HOH . M 6 HOH B 60 760 122 HOH HOH . M 6 HOH B 61 761 178 HOH HOH . M 6 HOH B 62 762 128 HOH HOH . M 6 HOH B 63 763 165 HOH HOH . M 6 HOH B 64 764 116 HOH HOH . M 6 HOH B 65 765 106 HOH HOH . M 6 HOH B 66 766 158 HOH HOH . M 6 HOH B 67 767 56 HOH HOH . M 6 HOH B 68 768 148 HOH HOH . M 6 HOH B 69 769 96 HOH HOH . M 6 HOH B 70 770 81 HOH HOH . M 6 HOH B 71 771 103 HOH HOH . M 6 HOH B 72 772 98 HOH HOH . M 6 HOH B 73 773 11 HOH HOH . M 6 HOH B 74 774 100 HOH HOH . M 6 HOH B 75 775 85 HOH HOH . M 6 HOH B 76 776 78 HOH HOH . M 6 HOH B 77 777 87 HOH HOH . M 6 HOH B 78 778 156 HOH HOH . M 6 HOH B 79 779 63 HOH HOH . M 6 HOH B 80 780 114 HOH HOH . M 6 HOH B 81 781 95 HOH HOH . M 6 HOH B 82 782 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . I 3 23.45 41.891 -3.077 1 45.1 ? C1 STI 603 B 1 HETATM 2 C C6 STI . . . I 3 22.509 42.055 -2.092 1 42.83 ? C6 STI 603 B 1 HETATM 3 C C5 STI . . . I 3 22.782 41.561 -0.84 1 44.84 ? C5 STI 603 B 1 HETATM 4 C C4 STI . . . I 3 23.982 40.917 -0.637 1 44.59 ? C4 STI 603 B 1 HETATM 5 N N3 STI . . . I 3 24.919 40.731 -1.57 1 43.96 ? N3 STI 603 B 1 HETATM 6 C C2 STI . . . I 3 24.615 41.233 -2.768 1 44 ? C2 STI 603 B 1 HETATM 7 C C7 STI . . . I 3 21.84 41.718 0.23 1 44.69 ? C7 STI 603 B 1 HETATM 8 C C12 STI . . . I 3 20.752 42.543 0.1 1 46.77 ? C12 STI 603 B 1 HETATM 9 C C11 STI . . . I 3 19.934 42.609 1.198 1 46.53 ? C11 STI 603 B 1 HETATM 10 N N10 STI . . . I 3 20.155 41.93 2.321 1 43.76 ? N10 STI 603 B 1 HETATM 11 C C9 STI . . . I 3 21.241 41.152 2.344 1 42.31 ? C9 STI 603 B 1 HETATM 12 N N8 STI . . . I 3 22.105 41.02 1.334 1 41.8 ? N8 STI 603 B 1 HETATM 13 N N13 STI . . . I 3 21.522 40.415 3.5 1 41.13 ? N13 STI 603 B 1 HETATM 14 C C14 STI . . . I 3 20.76 40.529 4.673 1 46.23 ? C14 STI 603 B 1 HETATM 15 C C19 STI . . . I 3 21.032 41.549 5.559 1 50.7 ? C19 STI 603 B 1 HETATM 16 C C18 STI . . . I 3 20.306 41.681 6.723 1 48.8 ? C18 STI 603 B 1 HETATM 17 C C17 STI . . . I 3 19.301 40.791 7.012 1 48.23 ? C17 STI 603 B 1 HETATM 18 C C16 STI . . . I 3 19.027 39.771 6.126 1 49.01 ? C16 STI 603 B 1 HETATM 19 C C15 STI . . . I 3 19.75 39.638 4.962 1 42.47 ? C15 STI 603 B 1 HETATM 20 N N21 STI . . . I 3 17.999 38.874 6.452 1 46.31 ? N21 STI 603 B 1 HETATM 21 C C22 STI . . . I 3 17.719 37.753 5.708 1 45.07 ? C22 STI 603 B 1 HETATM 22 C C23 STI . . . I 3 16.87 36.807 6.436 1 44.43 ? C23 STI 603 B 1 HETATM 23 C C25 STI . . . I 3 16.717 35.548 5.909 1 42.8 ? C25 STI 603 B 1 HETATM 24 C C26 STI . . . I 3 15.917 34.644 6.567 1 42.55 ? C26 STI 603 B 1 HETATM 25 C C27 STI . . . I 3 15.274 34.989 7.735 1 42.35 ? C27 STI 603 B 1 HETATM 26 C C28 STI . . . I 3 15.439 36.258 8.252 1 44.74 ? C28 STI 603 B 1 HETATM 27 C C29 STI . . . I 3 16.24 37.181 7.604 1 42.28 ? C29 STI 603 B 1 HETATM 28 C C46 STI . . . I 3 14.417 33.964 8.397 1 42.03 ? C46 STI 603 B 1 HETATM 29 N N48 STI . . . I 3 12.998 34.384 8.575 1 41.32 ? N48 STI 603 B 1 HETATM 30 C C53 STI . . . I 3 12.309 34.796 7.324 1 37.43 ? C53 STI 603 B 1 HETATM 31 C C52 STI . . . I 3 11.052 35.519 7.762 1 36.2 ? C52 STI 603 B 1 HETATM 32 N N51 STI . . . I 3 10.237 34.541 8.533 1 36.51 ? N51 STI 603 B 1 HETATM 33 C C54 STI . . . I 3 8.862 35.025 8.804 1 36.32 ? C54 STI 603 B 1 HETATM 34 C C50 STI . . . I 3 10.903 34.058 9.77 1 35.64 ? C50 STI 603 B 1 HETATM 35 C C49 STI . . . I 3 12.209 33.406 9.374 1 36.65 ? C49 STI 603 B 1 HETATM 36 O O29 STI . . . I 3 18.047 37.512 4.55 1 43.11 ? O29 STI 603 B 1 HETATM 37 C C20 STI . . . I 3 22.121 42.517 5.254 1 45.85 ? C20 STI 603 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #