data_6NPE # _model_server_result.job_id O51UJvw3vroW6QdE3OPwJg _model_server_result.datetime_utc '2024-11-23 01:34:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6npe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":605}' # _entry.id 6NPE # _exptl.entry_id 6NPE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NPE _cell.length_a 74.713 _cell.length_b 95.018 _cell.length_c 115.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 6NPE _atom_sites.fract_transf_matrix[1][1] 0.013385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 4 SO4 SO4 . D 2 SO4 A 1 602 6 SO4 SO4 . E 3 STI A 1 603 3 STI STI . F 4 KWD A 1 604 543 KWD UNL . G 2 SO4 B 1 601 3 SO4 SO4 . H 2 SO4 B 1 602 5 SO4 SO4 . I 3 STI B 1 603 4 STI STI . J 4 KWD B 1 604 543 KWD UNL . K 5 2PE B 1 605 170 2PE 2PE . L 6 HOH A 1 701 27 HOH HOH . L 6 HOH A 2 702 52 HOH HOH . L 6 HOH A 3 703 179 HOH HOH . L 6 HOH A 4 704 174 HOH HOH . L 6 HOH A 5 705 14 HOH HOH . L 6 HOH A 6 706 57 HOH HOH . L 6 HOH A 7 707 166 HOH HOH . L 6 HOH A 8 708 133 HOH HOH . L 6 HOH A 9 709 28 HOH HOH . L 6 HOH A 10 710 152 HOH HOH . L 6 HOH A 11 711 163 HOH HOH . L 6 HOH A 12 712 118 HOH HOH . L 6 HOH A 13 713 5 HOH HOH . L 6 HOH A 14 714 119 HOH HOH . L 6 HOH A 15 715 24 HOH HOH . L 6 HOH A 16 716 23 HOH HOH . L 6 HOH A 17 717 180 HOH HOH . L 6 HOH A 18 718 149 HOH HOH . L 6 HOH A 19 719 35 HOH HOH . L 6 HOH A 20 720 32 HOH HOH . L 6 HOH A 21 721 77 HOH HOH . L 6 HOH A 22 722 26 HOH HOH . L 6 HOH A 23 723 58 HOH HOH . L 6 HOH A 24 724 173 HOH HOH . L 6 HOH A 25 725 80 HOH HOH . L 6 HOH A 26 726 17 HOH HOH . L 6 HOH A 27 727 146 HOH HOH . L 6 HOH A 28 728 120 HOH HOH . L 6 HOH A 29 729 21 HOH HOH . L 6 HOH A 30 730 59 HOH HOH . L 6 HOH A 31 731 71 HOH HOH . L 6 HOH A 32 732 88 HOH HOH . L 6 HOH A 33 733 37 HOH HOH . L 6 HOH A 34 734 79 HOH HOH . L 6 HOH A 35 735 150 HOH HOH . L 6 HOH A 36 736 72 HOH HOH . L 6 HOH A 37 737 39 HOH HOH . L 6 HOH A 38 738 7 HOH HOH . L 6 HOH A 39 739 130 HOH HOH . L 6 HOH A 40 740 61 HOH HOH . L 6 HOH A 41 741 107 HOH HOH . L 6 HOH A 42 742 97 HOH HOH . L 6 HOH A 43 743 90 HOH HOH . L 6 HOH A 44 744 3 HOH HOH . L 6 HOH A 45 745 134 HOH HOH . L 6 HOH A 46 746 93 HOH HOH . L 6 HOH A 47 747 154 HOH HOH . L 6 HOH A 48 748 29 HOH HOH . L 6 HOH A 49 749 6 HOH HOH . L 6 HOH A 50 750 20 HOH HOH . L 6 HOH A 51 751 46 HOH HOH . L 6 HOH A 52 752 22 HOH HOH . L 6 HOH A 53 753 15 HOH HOH . L 6 HOH A 54 754 126 HOH HOH . L 6 HOH A 55 755 73 HOH HOH . L 6 HOH A 56 756 42 HOH HOH . L 6 HOH A 57 757 60 HOH HOH . L 6 HOH A 58 758 50 HOH HOH . L 6 HOH A 59 759 34 HOH HOH . L 6 HOH A 60 760 84 HOH HOH . L 6 HOH A 61 761 66 HOH HOH . L 6 HOH A 62 762 161 HOH HOH . L 6 HOH A 63 763 55 HOH HOH . L 6 HOH A 64 764 48 HOH HOH . L 6 HOH A 65 765 51 HOH HOH . L 6 HOH A 66 766 67 HOH HOH . L 6 HOH A 67 767 89 HOH HOH . L 6 HOH A 68 768 111 HOH HOH . L 6 HOH A 69 769 45 HOH HOH . L 6 HOH A 70 770 99 HOH HOH . L 6 HOH A 71 771 169 HOH HOH . L 6 HOH A 72 772 68 HOH HOH . L 6 HOH A 73 773 74 HOH HOH . L 6 HOH A 74 774 112 HOH HOH . L 6 HOH A 75 775 162 HOH HOH . L 6 HOH A 76 776 159 HOH HOH . L 6 HOH A 77 777 83 HOH HOH . L 6 HOH A 78 778 82 HOH HOH . L 6 HOH A 79 779 92 HOH HOH . L 6 HOH A 80 780 135 HOH HOH . L 6 HOH A 81 781 36 HOH HOH . L 6 HOH A 82 782 86 HOH HOH . L 6 HOH A 83 783 102 HOH HOH . L 6 HOH A 84 784 65 HOH HOH . L 6 HOH A 85 785 129 HOH HOH . L 6 HOH A 86 786 131 HOH HOH . L 6 HOH A 87 787 94 HOH HOH . L 6 HOH A 88 788 151 HOH HOH . L 6 HOH A 89 789 110 HOH HOH . L 6 HOH A 90 790 155 HOH HOH . L 6 HOH A 91 791 144 HOH HOH . L 6 HOH A 92 792 170 HOH HOH . L 6 HOH A 93 793 127 HOH HOH . L 6 HOH A 94 794 141 HOH HOH . L 6 HOH A 95 795 140 HOH HOH . L 6 HOH A 96 796 182 HOH HOH . L 6 HOH A 97 797 139 HOH HOH . M 6 HOH B 1 701 105 HOH HOH . M 6 HOH B 2 702 176 HOH HOH . M 6 HOH B 3 703 142 HOH HOH . M 6 HOH B 4 704 153 HOH HOH . M 6 HOH B 5 705 137 HOH HOH . M 6 HOH B 6 706 181 HOH HOH . M 6 HOH B 7 707 115 HOH HOH . M 6 HOH B 8 708 64 HOH HOH . M 6 HOH B 9 709 38 HOH HOH . M 6 HOH B 10 710 31 HOH HOH . M 6 HOH B 11 711 123 HOH HOH . M 6 HOH B 12 712 108 HOH HOH . M 6 HOH B 13 713 164 HOH HOH . M 6 HOH B 14 714 177 HOH HOH . M 6 HOH B 15 715 43 HOH HOH . M 6 HOH B 16 716 47 HOH HOH . M 6 HOH B 17 717 16 HOH HOH . M 6 HOH B 18 718 8 HOH HOH . M 6 HOH B 19 719 4 HOH HOH . M 6 HOH B 20 720 121 HOH HOH . M 6 HOH B 21 721 40 HOH HOH . M 6 HOH B 22 722 75 HOH HOH . M 6 HOH B 23 723 9 HOH HOH . M 6 HOH B 24 724 113 HOH HOH . M 6 HOH B 25 725 171 HOH HOH . M 6 HOH B 26 726 145 HOH HOH . M 6 HOH B 27 727 33 HOH HOH . M 6 HOH B 28 728 19 HOH HOH . M 6 HOH B 29 729 2 HOH HOH . M 6 HOH B 30 730 109 HOH HOH . M 6 HOH B 31 731 44 HOH HOH . M 6 HOH B 32 732 62 HOH HOH . M 6 HOH B 33 733 10 HOH HOH . M 6 HOH B 34 734 136 HOH HOH . M 6 HOH B 35 735 132 HOH HOH . M 6 HOH B 36 736 172 HOH HOH . M 6 HOH B 37 737 157 HOH HOH . M 6 HOH B 38 738 13 HOH HOH . M 6 HOH B 39 739 41 HOH HOH . M 6 HOH B 40 740 175 HOH HOH . M 6 HOH B 41 741 138 HOH HOH . M 6 HOH B 42 742 53 HOH HOH . M 6 HOH B 43 743 125 HOH HOH . M 6 HOH B 44 744 12 HOH HOH . M 6 HOH B 45 745 69 HOH HOH . M 6 HOH B 46 746 25 HOH HOH . M 6 HOH B 47 747 70 HOH HOH . M 6 HOH B 48 748 49 HOH HOH . M 6 HOH B 49 749 117 HOH HOH . M 6 HOH B 50 750 30 HOH HOH . M 6 HOH B 51 751 18 HOH HOH . M 6 HOH B 52 752 124 HOH HOH . M 6 HOH B 53 753 147 HOH HOH . M 6 HOH B 54 754 104 HOH HOH . M 6 HOH B 55 755 1 HOH HOH . M 6 HOH B 56 756 54 HOH HOH . M 6 HOH B 57 757 101 HOH HOH . M 6 HOH B 58 758 160 HOH HOH . M 6 HOH B 59 759 76 HOH HOH . M 6 HOH B 60 760 122 HOH HOH . M 6 HOH B 61 761 178 HOH HOH . M 6 HOH B 62 762 128 HOH HOH . M 6 HOH B 63 763 165 HOH HOH . M 6 HOH B 64 764 116 HOH HOH . M 6 HOH B 65 765 106 HOH HOH . M 6 HOH B 66 766 158 HOH HOH . M 6 HOH B 67 767 56 HOH HOH . M 6 HOH B 68 768 148 HOH HOH . M 6 HOH B 69 769 96 HOH HOH . M 6 HOH B 70 770 81 HOH HOH . M 6 HOH B 71 771 103 HOH HOH . M 6 HOH B 72 772 98 HOH HOH . M 6 HOH B 73 773 11 HOH HOH . M 6 HOH B 74 774 100 HOH HOH . M 6 HOH B 75 775 85 HOH HOH . M 6 HOH B 76 776 78 HOH HOH . M 6 HOH B 77 777 87 HOH HOH . M 6 HOH B 78 778 156 HOH HOH . M 6 HOH B 79 779 63 HOH HOH . M 6 HOH B 80 780 114 HOH HOH . M 6 HOH B 81 781 95 HOH HOH . M 6 HOH B 82 782 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . K 5 -5.318 24.416 7.016 1 56.13 ? O1 2PE 605 B 1 HETATM 2 C C2 2PE . . . K 5 -5.892 25.144 5.964 1 46.65 ? C2 2PE 605 B 1 HETATM 3 C C3 2PE . . . K 5 -7.405 25.216 6.189 1 53.98 ? C3 2PE 605 B 1 HETATM 4 O O4 2PE . . . K 5 -7.845 26.546 6.077 1 57.95 ? O4 2PE 605 B 1 HETATM 5 C C5 2PE . . . K 5 -9.176 26.877 6.395 1 47.89 ? C5 2PE 605 B 1 HETATM 6 C C6 2PE . . . K 5 -9.321 27.388 7.834 1 55.01 ? C6 2PE 605 B 1 HETATM 7 O O7 2PE . . . K 5 -9.697 28.738 7.809 1 53.39 ? O7 2PE 605 B 1 HETATM 8 C C8 2PE . . . K 5 -9.629 29.545 8.96 1 53.9 ? C8 2PE 605 B 1 HETATM 9 C C9 2PE . . . K 5 -9.241 28.738 10.2 1 54.12 ? C9 2PE 605 B 1 HETATM 10 O O10 2PE . . . K 5 -7.852 28.83 10.344 1 60.92 ? O10 2PE 605 B 1 HETATM 11 C C11 2PE . . . K 5 -7.28 29.304 11.53 1 63.23 ? C11 2PE 605 B 1 HETATM 12 C C12 2PE . . . K 5 -7.509 28.275 12.641 1 70.17 ? C12 2PE 605 B 1 HETATM 13 O O13 2PE . . . K 5 -6.348 27.505 12.817 1 72.35 ? O13 2PE 605 B 1 HETATM 14 C C14 2PE . . . K 5 -5.844 26.737 11.755 1 69.38 ? C14 2PE 605 B 1 HETATM 15 C C15 2PE . . . K 5 -4.451 26.208 12.126 1 77.67 ? C15 2PE 605 B 1 HETATM 16 O O16 2PE . . . K 5 -3.677 25.806 11.011 1 74.3 ? O16 2PE 605 B 1 HETATM 17 C C17 2PE . . . K 5 -4.203 25.186 9.858 1 67.48 ? C17 2PE 605 B 1 HETATM 18 C C18 2PE . . . K 5 -4.571 23.703 10.049 1 69.22 ? C18 2PE 605 B 1 HETATM 19 O O19 2PE . . . K 5 -5.504 23.533 11.099 1 79.99 ? O19 2PE 605 B 1 HETATM 20 C C20 2PE . . . K 5 -6.897 23.406 10.893 1 64.1 ? C20 2PE 605 B 1 HETATM 21 C C21 2PE . . . K 5 -7.306 23.71 9.444 1 62.32 ? C21 2PE 605 B 1 HETATM 22 O O22 2PE . . . K 5 -8.541 24.39 9.426 1 62.24 ? O22 2PE 605 B 1 HETATM 23 C C23 2PE . . . K 5 -9.543 24.006 10.331 1 49.46 ? C23 2PE 605 B 1 HETATM 24 C C24 2PE . . . K 5 -10.151 25.282 10.9 1 49.72 ? C24 2PE 605 B 1 HETATM 25 O O25 2PE . . . K 5 -10.777 24.958 12.112 1 56.78 ? O25 2PE 605 B 1 HETATM 26 C C26 2PE . . . K 5 -10.982 25.989 13.039 1 57.52 ? C26 2PE 605 B 1 HETATM 27 C C27 2PE . . . K 5 -9.833 26.034 14.065 1 65.55 ? C27 2PE 605 B 1 HETATM 28 O O28 2PE . . . K 5 -9.597 24.758 14.599 1 72.32 ? O28 2PE 605 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #