data_6NPH
#
_model_server_result.job_id            1Q36eO8mn9aYGq8EG8M96A 
_model_server_result.datetime_utc      '2024-11-04 22:34:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nph 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    6NPH 
#
_exptl.entry_id    6NPH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NPH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NPH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 291 A CYS 496 1_555 A SG CYS 302 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 291 B CYS 496 1_555 B SG CYS 302 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A O ASN 15 A ASN 220 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? 
metalc ? metalc2 A O ILE 16 A ILE 221 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc3 A OH TYR 100 A TYR 305 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc4 A O PRO 212 A PRO 417 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc5 A O THR 215 A THR 420 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? 
metalc ? metalc6 B O ASN 15 B ASN 220 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? 
metalc ? metalc7 B O ILE 16 B ILE 221 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc8 B OH TYR 100 B TYR 305 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc9 B O PRO 212 B PRO 417 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc10 B O THR 215 B THR 420 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6NPH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 POV A 1 701 701 POV POV . 
D 2 POV A 1 702 901 POV POV . 
E 2 POV A 1 703 1001 POV POV . 
F 3 K A 1 704 1 K K . 
G 4 CL A 1 705 1 CL CL . 
H 4 CL A 1 706 3 CL CL . 
I 2 POV B 1 801 801 POV POV . 
J 2 POV B 1 802 701 POV POV . 
K 2 POV B 1 803 801 POV POV . 
L 2 POV B 1 804 901 POV POV . 
M 3 K B 1 805 2 K K . 
N 4 CL B 1 806 2 CL CL . 
O 4 CL B 1 807 4 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . C 2 110.972 103.676 125.392 1 61.35 ? N POV 701 A 1 
HETATM 2 P P POV . . . C 2 110.021 100.668 122.085 1 61.35 ? P POV 701 A 1 
HETATM 3 C C1 POV . . . C 2 112.03 101.473 120.517 1 61.35 ? C1 POV 701 A 1 
HETATM 4 C C2 POV . . . C 2 112.175 101.77 119.008 1 61.35 ? C2 POV 701 A 1 
HETATM 5 C C3 POV . . . C 2 112.404 100.444 118.296 1 61.35 ? C3 POV 701 A 1 
HETATM 6 C C210 POV . . . C 2 111.888 111.142 110.332 1 61.35 ? C210 POV 701 A 1 
HETATM 7 C C310 POV . . . C 2 118.618 102.292 110.72 1 61.35 ? C310 POV 701 A 1 
HETATM 8 C C11 POV . . . C 2 110.385 101.359 124.603 1 61.35 ? C11 POV 701 A 1 
HETATM 9 O O11 POV . . . C 2 110.947 100.576 120.669 1 61.35 ? O11 POV 701 A 1 
HETATM 10 C C211 POV . . . C 2 110.955 111.64 109.21 1 61.35 ? C211 POV 701 A 1 
HETATM 11 C C311 POV . . . C 2 118.661 101.132 109.633 1 61.35 ? C311 POV 701 A 1 
HETATM 12 C C12 POV . . . C 2 111.339 102.236 125.456 1 61.35 ? C12 POV 701 A 1 
HETATM 13 O O12 POV . . . C 2 111.022 100.897 123.401 1 61.35 ? O12 POV 701 A 1 
HETATM 14 C C212 POV . . . C 2 110.958 113.199 109.266 1 61.35 ? C212 POV 701 A 1 
HETATM 15 C C312 POV . . . C 2 119.981 100.306 109.793 1 61.35 ? C312 POV 701 A 1 
HETATM 16 C C13 POV . . . C 2 111.317 104.195 124.059 1 61.35 ? C13 POV 701 A 1 
HETATM 17 O O13 POV . . . C 2 109.053 101.822 122.003 1 61.35 ? O13 POV 701 A 1 
HETATM 18 C C213 POV . . . C 2 109.705 113.7 110.036 1 61.35 ? C213 POV 701 A 1 
HETATM 19 C C313 POV . . . C 2 121.23 101.264 109.804 1 61.35 ? C313 POV 701 A 1 
HETATM 20 C C14 POV . . . C 2 109.538 103.898 125.65 1 61.35 ? C14 POV 701 A 1 
HETATM 21 O O14 POV . . . C 2 109.243 99.378 122.255 1 61.35 ? O14 POV 701 A 1 
HETATM 22 C C214 POV . . . C 2 108.952 114.72 109.139 1 61.35 ? C214 POV 701 A 1 
HETATM 23 C C314 POV . . . C 2 122.53 100.443 110.132 1 61.35 ? C314 POV 701 A 1 
HETATM 24 C C15 POV . . . C 2 111.734 104.413 126.398 1 61.35 ? C15 POV 701 A 1 
HETATM 25 C C215 POV . . . C 2 109.314 116.165 109.583 1 61.35 ? C215 POV 701 A 1 
HETATM 26 C C315 POV . . . C 2 123.359 100.25 108.826 1 61.35 ? C315 POV 701 A 1 
HETATM 27 C C216 POV . . . C 2 108.972 117.142 108.443 1 61.35 ? C216 POV 701 A 1 
HETATM 28 C C316 POV . . . C 2 123.966 101.609 108.38 1 61.35 ? C316 POV 701 A 1 
HETATM 29 C C217 POV . . . C 2 109.253 118.581 108.914 1 61.35 ? C217 POV 701 A 1 
HETATM 30 C C218 POV . . . C 2 109.005 119.583 107.768 1 61.35 ? C218 POV 701 A 1 
HETATM 31 C C21 POV . . . C 2 112.965 103.821 118.149 1 61.35 ? C21 POV 701 A 1 
HETATM 32 O O21 POV . . . C 2 113.265 102.594 118.796 1 61.35 ? O21 POV 701 A 1 
HETATM 33 C C22 POV . . . C 2 112.213 103.875 116.807 1 61.35 ? C22 POV 701 A 1 
HETATM 34 O O22 POV . . . C 2 113.312 104.837 118.634 1 61.35 ? O22 POV 701 A 1 
HETATM 35 C C23 POV . . . C 2 113.164 104.608 115.802 1 61.35 ? C23 POV 701 A 1 
HETATM 36 C C24 POV . . . C 2 112.663 106.071 115.571 1 61.35 ? C24 POV 701 A 1 
HETATM 37 C C25 POV . . . C 2 112.503 106.271 114.035 1 61.35 ? C25 POV 701 A 1 
HETATM 38 C C26 POV . . . C 2 112.794 107.762 113.678 1 61.35 ? C26 POV 701 A 1 
HETATM 39 C C27 POV . . . C 2 112.514 107.94 112.15 1 61.35 ? C27 POV 701 A 1 
HETATM 40 C C28 POV . . . C 2 112.961 109.369 111.702 1 61.35 ? C28 POV 701 A 1 
HETATM 41 C C29 POV . . . C 2 112.032 109.822 110.568 1 61.35 ? C29 POV 701 A 1 
HETATM 42 C C31 POV . . . C 2 114.076 98.73 118.13 1 61.35 ? C31 POV 701 A 1 
HETATM 43 O O31 POV . . . C 2 113.408 99.703 118.948 1 61.35 ? O31 POV 701 A 1 
HETATM 44 C C32 POV . . . C 2 114.603 99.102 116.709 1 61.35 ? C32 POV 701 A 1 
HETATM 45 O O32 POV . . . C 2 114.234 97.632 118.543 1 61.35 ? O32 POV 701 A 1 
HETATM 46 C C33 POV . . . C 2 116.121 99.498 116.792 1 61.35 ? C33 POV 701 A 1 
HETATM 47 C C34 POV . . . C 2 116.585 100.277 115.495 1 61.35 ? C34 POV 701 A 1 
HETATM 48 C C35 POV . . . C 2 115.506 101.345 115.09 1 61.35 ? C35 POV 701 A 1 
HETATM 49 C C36 POV . . . C 2 116.169 102.599 114.413 1 61.35 ? C36 POV 701 A 1 
HETATM 50 C C37 POV . . . C 2 117.134 102.163 113.287 1 61.35 ? C37 POV 701 A 1 
HETATM 51 C C38 POV . . . C 2 116.373 102.087 111.923 1 61.35 ? C38 POV 701 A 1 
HETATM 52 C C39 POV . . . C 2 117.172 102.874 110.831 1 61.35 ? C39 POV 701 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#