data_6NPH
#
_model_server_result.job_id            CvRW6ghllZoQ65ORzbzdPg 
_model_server_result.datetime_utc      '2024-11-04 22:38:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nph 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":703}' 
#
_entry.id    6NPH 
#
_exptl.entry_id    6NPH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NPH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NPH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 291 A CYS 496 1_555 A SG CYS 302 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 291 B CYS 496 1_555 B SG CYS 302 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A O ASN 15 A ASN 220 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? 
metalc ? metalc2 A O ILE 16 A ILE 221 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc3 A OH TYR 100 A TYR 305 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc4 A O PRO 212 A PRO 417 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc5 A O THR 215 A THR 420 1_555 F K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? 
metalc ? metalc6 B O ASN 15 B ASN 220 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? 
metalc ? metalc7 B O ILE 16 B ILE 221 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc8 B OH TYR 100 B TYR 305 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc9 B O PRO 212 B PRO 417 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc10 B O THR 215 B THR 420 1_555 M K K . B K 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6NPH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 POV A 1 701 701 POV POV . 
D 2 POV A 1 702 901 POV POV . 
E 2 POV A 1 703 1001 POV POV . 
F 3 K A 1 704 1 K K . 
G 4 CL A 1 705 1 CL CL . 
H 4 CL A 1 706 3 CL CL . 
I 2 POV B 1 801 801 POV POV . 
J 2 POV B 1 802 701 POV POV . 
K 2 POV B 1 803 801 POV POV . 
L 2 POV B 1 804 901 POV POV . 
M 3 K B 1 805 2 K K . 
N 4 CL B 1 806 2 CL CL . 
O 4 CL B 1 807 4 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . E 2 100.399 102.252 122.682 1 70.58 ? N POV 703 A 1 
HETATM 2 P P POV . . . E 2 104.527 99.569 121.599 1 70.58 ? P POV 703 A 1 
HETATM 3 C C1 POV . . . E 2 103.95 97.849 119.643 1 70.58 ? C1 POV 703 A 1 
HETATM 4 C C2 POV . . . E 2 105.232 96.975 119.494 1 70.58 ? C2 POV 703 A 1 
HETATM 5 C C3 POV . . . E 2 106.405 97.855 119.043 1 70.58 ? C3 POV 703 A 1 
HETATM 6 C C210 POV . . . E 2 106.987 102.419 109.267 1 70.58 ? C210 POV 703 A 1 
HETATM 7 C C310 POV . . . E 2 111.824 103.584 110.714 1 70.58 ? C310 POV 703 A 1 
HETATM 8 C C11 POV . . . E 2 102.403 101.146 121.751 1 70.58 ? C11 POV 703 A 1 
HETATM 9 O O11 POV . . . E 2 104.311 99.179 119.968 1 70.58 ? O11 POV 703 A 1 
HETATM 10 C C211 POV . . . E 2 108.172 103.249 108.734 1 70.58 ? C211 POV 703 A 1 
HETATM 11 C C311 POV . . . E 2 113.23 104.169 110.277 1 70.58 ? C311 POV 703 A 1 
HETATM 12 C C12 POV . . . E 2 101.816 101.922 122.955 1 70.58 ? C12 POV 703 A 1 
HETATM 13 O O12 POV . . . E 2 103.827 101.045 121.902 1 70.58 ? O12 POV 703 A 1 
HETATM 14 C C212 POV . . . E 2 108.425 102.809 107.253 1 70.58 ? C212 POV 703 A 1 
HETATM 15 C C312 POV . . . E 2 113.043 105.001 108.972 1 70.58 ? C312 POV 703 A 1 
HETATM 16 C C13 POV . . . E 2 99.398 102.95 123.508 1 70.58 ? C13 POV 703 A 1 
HETATM 17 O O13 POV . . . E 2 106 99.636 121.899 1 70.58 ? O13 POV 703 A 1 
HETATM 18 C C213 POV . . . E 2 107.798 103.85 106.274 1 70.58 ? C213 POV 703 A 1 
HETATM 19 C C313 POV . . . E 2 112.497 104.058 107.843 1 70.58 ? C313 POV 703 A 1 
HETATM 20 C C14 POV . . . E 2 100.969 103.611 122.696 1 70.58 ? C14 POV 703 A 1 
HETATM 21 O O14 POV . . . E 2 103.872 98.501 122.449 1 70.58 ? O14 POV 703 A 1 
HETATM 22 C C214 POV . . . E 2 106.609 103.21 105.492 1 70.58 ? C214 POV 703 A 1 
HETATM 23 C C314 POV . . . E 2 113.39 104.216 106.564 1 70.58 ? C314 POV 703 A 1 
HETATM 24 C C15 POV . . . E 2 100.203 101.25 123.732 1 70.58 ? C15 POV 703 A 1 
HETATM 25 C C215 POV . . . E 2 106.026 104.249 104.481 1 70.58 ? C215 POV 703 A 1 
HETATM 26 C C315 POV . . . E 2 114.869 103.884 106.923 1 70.58 ? C315 POV 703 A 1 
HETATM 27 C C216 POV . . . E 2 107.156 104.826 103.607 1 70.58 ? C216 POV 703 A 1 
HETATM 28 C C316 POV . . . E 2 115.469 102.952 105.835 1 70.58 ? C316 POV 703 A 1 
HETATM 29 C C217 POV . . . E 2 106.558 105.603 102.419 1 70.58 ? C217 POV 703 A 1 
HETATM 30 C C218 POV . . . E 2 107.707 106.148 101.539 1 70.58 ? C218 POV 703 A 1 
HETATM 31 C C21 POV . . . E 2 104.548 95.915 117.345 1 70.58 ? C21 POV 703 A 1 
HETATM 32 O O21 POV . . . E 2 105.063 95.835 118.68 1 70.58 ? O21 POV 703 A 1 
HETATM 33 C C22 POV . . . E 2 105.504 95.933 116.118 1 70.58 ? C22 POV 703 A 1 
HETATM 34 O O22 POV . . . E 2 103.376 95.931 117.137 1 70.58 ? O22 POV 703 A 1 
HETATM 35 C C23 POV . . . E 2 105.408 97.36 115.471 1 70.58 ? C23 POV 703 A 1 
HETATM 36 C C24 POV . . . E 2 106.197 97.4 114.118 1 70.58 ? C24 POV 703 A 1 
HETATM 37 C C25 POV . . . E 2 105.82 98.72 113.37 1 70.58 ? C25 POV 703 A 1 
HETATM 38 C C26 POV . . . E 2 106.99 99.134 112.42 1 70.58 ? C26 POV 703 A 1 
HETATM 39 C C27 POV . . . E 2 106.392 99.369 110.995 1 70.58 ? C27 POV 703 A 1 
HETATM 40 C C28 POV . . . E 2 105.939 100.862 110.888 1 70.58 ? C28 POV 703 A 1 
HETATM 41 C C29 POV . . . E 2 107.136 101.683 110.387 1 70.58 ? C29 POV 703 A 1 
HETATM 42 C C31 POV . . . E 2 108.488 96.979 118.351 1 70.58 ? C31 POV 703 A 1 
HETATM 43 O O31 POV . . . E 2 107.62 97.272 119.446 1 70.58 ? O31 POV 703 A 1 
HETATM 44 C C32 POV . . . E 2 108.659 98.015 117.197 1 70.58 ? C32 POV 703 A 1 
HETATM 45 O O32 POV . . . E 2 109.07 95.95 118.327 1 70.58 ? O32 POV 703 A 1 
HETATM 46 C C33 POV . . . E 2 109.558 97.419 116.061 1 70.58 ? C33 POV 703 A 1 
HETATM 47 C C34 POV . . . E 2 109.672 98.463 114.881 1 70.58 ? C34 POV 703 A 1 
HETATM 48 C C35 POV . . . E 2 110.854 99.44 115.199 1 70.58 ? C35 POV 703 A 1 
HETATM 49 C C36 POV . . . E 2 111.431 100.101 113.895 1 70.58 ? C36 POV 703 A 1 
HETATM 50 C C37 POV . . . E 2 110.594 101.356 113.585 1 70.58 ? C37 POV 703 A 1 
HETATM 51 C C38 POV . . . E 2 110.78 101.725 112.083 1 70.58 ? C38 POV 703 A 1 
HETATM 52 C C39 POV . . . E 2 112.025 102.658 111.953 1 70.58 ? C39 POV 703 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           52 
#