data_6NPL
#
_model_server_result.job_id            Kq6IlLTASA_kqmnCQHyB6w 
_model_server_result.datetime_utc      '2024-12-21 17:20:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6npl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1207}' 
#
_entry.id    6NPL 
#
_exptl.entry_id    6NPL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NPL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NPL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 291 A CYS 496 1_555 A SG CYS 302 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 291 B CYS 496 1_555 B SG CYS 302 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A O ASN 15 A ASN 220 1_555 C K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc2 A O ILE 16 A ILE 221 1_555 C K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc3 A OH TYR 100 A TYR 305 1_555 C K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc4 A O PRO 212 A PRO 417 1_555 C K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc5 A O THR 215 A THR 420 1_555 C K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? 
metalc ? metalc6 B O ASN 15 B ASN 220 1_555 I K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc7 B O ILE 16 B ILE 221 1_555 I K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc8 B OH TYR 100 B TYR 305 1_555 I K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc9 B O PRO 212 B PRO 417 1_555 I K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? 
metalc ? metalc10 B O THR 215 B THR 420 1_555 I K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 258 n n 
N C13 POV sing 259 n n 
N C14 POV sing 260 n n 
N C15 POV sing 261 n n 
P O11 POV sing 262 n n 
P O12 POV sing 263 n n 
P O13 POV sing 264 n n 
P O14 POV doub 265 n n 
C1 C2 POV sing 266 n n 
C1 O11 POV sing 267 n n 
C1 H1 POV sing 268 n n 
C1 H1A POV sing 269 n n 
C2 C3 POV sing 270 n n 
C2 O21 POV sing 271 n n 
C2 H2 POV sing 272 n n 
C3 O31 POV sing 273 n n 
C3 H3 POV sing 274 n n 
C3 H3A POV sing 275 n n 
C210 C211 POV sing 276 n n 
C210 C29 POV doub 277 z n 
C210 H210 POV sing 278 n n 
C310 C311 POV sing 279 n n 
C310 C39 POV sing 280 n n 
C310 H310 POV sing 281 n n 
C310 H31A POV sing 282 n n 
C11 C12 POV sing 283 n n 
C11 O12 POV sing 284 n n 
C11 H11 POV sing 285 n n 
C11 H11A POV sing 286 n n 
C211 C212 POV sing 287 n n 
C211 H211 POV sing 288 n n 
C211 H21A POV sing 289 n n 
C311 C312 POV sing 290 n n 
C311 H311 POV sing 291 n n 
C311 H31B POV sing 292 n n 
C12 H12 POV sing 293 n n 
C12 H12A POV sing 294 n n 
C212 C213 POV sing 295 n n 
C212 H212 POV sing 296 n n 
C212 H21B POV sing 297 n n 
C312 C313 POV sing 298 n n 
C312 H312 POV sing 299 n n 
C312 H31C POV sing 300 n n 
C13 H13 POV sing 301 n n 
C13 H13A POV sing 302 n n 
C13 H13B POV sing 303 n n 
C213 C214 POV sing 304 n n 
C213 H213 POV sing 305 n n 
C213 H21C POV sing 306 n n 
C313 C314 POV sing 307 n n 
C313 H313 POV sing 308 n n 
C313 H31D POV sing 309 n n 
C14 H14 POV sing 310 n n 
C14 H14A POV sing 311 n n 
C14 H14B POV sing 312 n n 
C214 C215 POV sing 313 n n 
C214 H214 POV sing 314 n n 
C214 H21D POV sing 315 n n 
C314 C315 POV sing 316 n n 
C314 H314 POV sing 317 n n 
C314 H31E POV sing 318 n n 
C15 H15 POV sing 319 n n 
C15 H15A POV sing 320 n n 
C15 H15B POV sing 321 n n 
C215 C216 POV sing 322 n n 
C215 H215 POV sing 323 n n 
C215 H21E POV sing 324 n n 
C315 C316 POV sing 325 n n 
C315 H315 POV sing 326 n n 
C315 H31F POV sing 327 n n 
C216 C217 POV sing 328 n n 
C216 H216 POV sing 329 n n 
C216 H21F POV sing 330 n n 
C316 H316 POV sing 331 n n 
C316 H31G POV sing 332 n n 
C316 H31H POV sing 333 n n 
C217 C218 POV sing 334 n n 
C217 H217 POV sing 335 n n 
C217 H21G POV sing 336 n n 
C218 H218 POV sing 337 n n 
C218 H21H POV sing 338 n n 
C218 H21J POV sing 339 n n 
C21 O21 POV sing 340 n n 
C21 C22 POV sing 341 n n 
C21 O22 POV doub 342 n n 
C22 C23 POV sing 343 n n 
C22 H22 POV sing 344 n n 
C22 H22A POV sing 345 n n 
C23 C24 POV sing 346 n n 
C23 H23 POV sing 347 n n 
C23 H23A POV sing 348 n n 
C24 C25 POV sing 349 n n 
C24 H24 POV sing 350 n n 
C24 H24A POV sing 351 n n 
C25 C26 POV sing 352 n n 
C25 H25 POV sing 353 n n 
C25 H25A POV sing 354 n n 
C26 C27 POV sing 355 n n 
C26 H26 POV sing 356 n n 
C26 H26A POV sing 357 n n 
C27 C28 POV sing 358 n n 
C27 H27 POV sing 359 n n 
C27 H27A POV sing 360 n n 
C28 C29 POV sing 361 n n 
C28 H28 POV sing 362 n n 
C28 H28A POV sing 363 n n 
C29 H29 POV sing 364 n n 
C31 O31 POV sing 365 n n 
C31 C32 POV sing 366 n n 
C31 O32 POV doub 367 n n 
C32 C33 POV sing 368 n n 
C32 H32 POV sing 369 n n 
C32 H32A POV sing 370 n n 
C33 C34 POV sing 371 n n 
C33 H33 POV sing 372 n n 
C33 H33A POV sing 373 n n 
C34 C35 POV sing 374 n n 
C34 H34 POV sing 375 n n 
C34 H34A POV sing 376 n n 
C35 C36 POV sing 377 n n 
C35 H35 POV sing 378 n n 
C35 H35A POV sing 379 n n 
C36 C37 POV sing 380 n n 
C36 H36 POV sing 381 n n 
C36 H36A POV sing 382 n n 
C37 C38 POV sing 383 n n 
C37 H37 POV sing 384 n n 
C37 H37A POV sing 385 n n 
C38 C39 POV sing 386 n n 
C38 H38 POV sing 387 n n 
C38 H38A POV sing 388 n n 
C39 H39 POV sing 389 n n 
C39 H39A POV sing 390 n n 
#
_atom_sites.entry_id                     6NPL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K A 1 1201 1 K K . 
D 3 CL A 1 1202 1 CL CL . 
E 3 CL A 1 1203 3 CL CL . 
F 4 POV A 1 1204 301 POV POV . 
G 4 POV A 1 1205 501 POV POV . 
H 4 POV A 1 1206 601 POV POV . 
I 2 K B 1 1201 2 K K . 
J 3 CL B 1 1202 2 CL CL . 
K 3 CL B 1 1203 4 CL CL . 
L 4 POV B 1 1204 401 POV POV . 
M 4 POV B 1 1205 701 POV POV . 
N 4 POV B 1 1206 801 POV POV . 
O 4 POV B 1 1207 901 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . O 4 135.492 122.059 120.306 1 31.16 ? N POV 1207 B 1 
HETATM 2 P P POV . . . O 4 132.402 126.168 119.792 1 31.16 ? P POV 1207 B 1 
HETATM 3 C C1 POV . . . O 4 130.079 127.556 119.425 1 31.16 ? C1 POV 1207 B 1 
HETATM 4 C C2 POV . . . O 4 130.882 128.736 118.8 1 31.16 ? C2 POV 1207 B 1 
HETATM 5 C C3 POV . . . O 4 131.021 129.852 119.846 1 31.16 ? C3 POV 1207 B 1 
HETATM 6 C C210 POV . . . O 4 128.684 124.093 107.724 1 31.16 ? C210 POV 1207 B 1 
HETATM 7 C C310 POV . . . O 4 125.348 126.229 112.057 1 31.16 ? C310 POV 1207 B 1 
HETATM 8 C C11 POV . . . O 4 134.055 124.104 120.049 1 31.16 ? C11 POV 1207 B 1 
HETATM 9 O O11 POV . . . O 4 130.773 126.32 119.339 1 31.16 ? O11 POV 1207 B 1 
HETATM 10 C C211 POV . . . O 4 128.076 124.878 106.536 1 31.16 ? C211 POV 1207 B 1 
HETATM 11 C C311 POV . . . O 4 124.444 124.99 111.649 1 31.16 ? C311 POV 1207 B 1 
HETATM 12 C C12 POV . . . O 4 134.214 122.706 120.703 1 31.16 ? C12 POV 1207 B 1 
HETATM 13 O O12 POV . . . O 4 132.709 124.585 120.215 1 31.16 ? O12 POV 1207 B 1 
HETATM 14 C C212 POV . . . O 4 128.232 124.044 105.219 1 31.16 ? C212 POV 1207 B 1 
HETATM 15 C C312 POV . . . O 4 124.711 124.661 110.144 1 31.16 ? C312 POV 1207 B 1 
HETATM 16 C C13 POV . . . O 4 135.59 121.922 118.838 1 31.16 ? C13 POV 1207 B 1 
HETATM 17 O O13 POV . . . O 4 132.708 127.052 120.974 1 31.16 ? O13 POV 1207 B 1 
HETATM 18 C C213 POV . . . O 4 129.095 124.865 104.207 1 31.16 ? C213 POV 1207 B 1 
HETATM 19 C C313 POV . . . O 4 123.723 123.538 109.662 1 31.16 ? C313 POV 1207 B 1 
HETATM 20 C C14 POV . . . O 4 136.626 122.861 120.8 1 31.16 ? C14 POV 1207 B 1 
HETATM 21 O O14 POV . . . O 4 133.311 126.52 118.629 1 31.16 ? O14 POV 1207 B 1 
HETATM 22 C C214 POV . . . O 4 129.967 123.903 103.343 1 31.16 ? C214 POV 1207 B 1 
HETATM 23 C C314 POV . . . O 4 123.932 123.293 108.125 1 31.16 ? C314 POV 1207 B 1 
HETATM 24 C C15 POV . . . O 4 135.552 120.727 120.905 1 31.16 ? C15 POV 1207 B 1 
HETATM 25 C C215 POV . . . O 4 129.047 122.913 102.562 1 31.16 ? C215 POV 1207 B 1 
HETATM 26 C C315 POV . . . O 4 122.592 122.844 107.473 1 31.16 ? C315 POV 1207 B 1 
HETATM 27 C C216 POV . . . O 4 129.531 122.831 101.102 1 31.16 ? C216 POV 1207 B 1 
HETATM 28 C C316 POV . . . O 4 122.747 122.87 105.93 1 31.16 ? C316 POV 1207 B 1 
HETATM 29 C C217 POV . . . O 4 128.702 121.785 100.331 1 31.16 ? C217 POV 1207 B 1 
HETATM 30 C C218 POV . . . O 4 127.218 122.214 100.297 1 31.16 ? C218 POV 1207 B 1 
HETATM 31 C C21 POV . . . O 4 131.082 129.755 116.645 1 31.16 ? C21 POV 1207 B 1 
HETATM 32 O O21 POV . . . O 4 130.236 129.211 117.659 1 31.16 ? O21 POV 1207 B 1 
HETATM 33 C C22 POV . . . O 4 130.471 130.207 115.291 1 31.16 ? C22 POV 1207 B 1 
HETATM 34 O O22 POV . . . O 4 132.253 129.865 116.816 1 31.16 ? O22 POV 1207 B 1 
HETATM 35 C C23 POV . . . O 4 130.96 129.232 114.158 1 31.16 ? C23 POV 1207 B 1 
HETATM 36 C C24 POV . . . O 4 129.74 128.712 113.314 1 31.16 ? C24 POV 1207 B 1 
HETATM 37 C C25 POV . . . O 4 130.257 128.414 111.866 1 31.16 ? C25 POV 1207 B 1 
HETATM 38 C C26 POV . . . O 4 129.402 127.291 111.19 1 31.16 ? C26 POV 1207 B 1 
HETATM 39 C C27 POV . . . O 4 130.191 126.786 109.932 1 31.16 ? C27 POV 1207 B 1 
HETATM 40 C C28 POV . . . O 4 129.185 126.298 108.834 1 31.16 ? C28 POV 1207 B 1 
HETATM 41 C C29 POV . . . O 4 129.198 124.757 108.787 1 31.16 ? C29 POV 1207 B 1 
HETATM 42 C C31 POV . . . O 4 129.168 131.043 120.744 1 31.16 ? C31 POV 1207 B 1 
HETATM 43 O O31 POV . . . O 4 129.925 129.83 120.735 1 31.16 ? O31 POV 1207 B 1 
HETATM 44 C C32 POV . . . O 4 127.728 131.062 120.147 1 31.16 ? C32 POV 1207 B 1 
HETATM 45 O O32 POV . . . O 4 129.632 132.029 121.206 1 31.16 ? O32 POV 1207 B 1 
HETATM 46 C C33 POV . . . O 4 127.803 131.303 118.598 1 31.16 ? C33 POV 1207 B 1 
HETATM 47 C C34 POV . . . O 4 126.569 130.608 117.897 1 31.16 ? C34 POV 1207 B 1 
HETATM 48 C C35 POV . . . O 4 126.924 129.123 117.527 1 31.16 ? C35 POV 1207 B 1 
HETATM 49 C C36 POV . . . O 4 127.047 129.004 115.962 1 31.16 ? C36 POV 1207 B 1 
HETATM 50 C C37 POV . . . O 4 126.508 127.633 115.492 1 31.16 ? C37 POV 1207 B 1 
HETATM 51 C C38 POV . . . O 4 126.13 127.712 113.976 1 31.16 ? C38 POV 1207 B 1 
HETATM 52 C C39 POV . . . O 4 125.224 126.492 113.593 1 31.16 ? C39 POV 1207 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           52 
#