data_6NPU # _model_server_result.job_id bCRjt8Rkuil8wExDFdieEg _model_server_result.datetime_utc '2024-11-26 22:48:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6npu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6NPU # _exptl.entry_id 6NPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NPU _cell.length_a 75.093 _cell.length_b 95.643 _cell.length_c 115.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 401 n y C1 C2 STI sing 402 n y C1 H11 STI sing 403 n n C6 C5 STI sing 404 n y C6 H61 STI sing 405 n n C5 C4 STI doub 406 n y C5 C7 STI sing 407 n y C4 N3 STI sing 408 n y C4 H41 STI sing 409 n n N3 C2 STI doub 410 n y C2 H21 STI sing 411 n n C7 C12 STI doub 412 n y C7 N8 STI sing 413 n y C12 C11 STI sing 414 n y C12 H121 STI sing 415 n n C11 N10 STI doub 416 n y C11 H111 STI sing 417 n n N10 C9 STI sing 418 n y C9 N8 STI doub 419 n y C9 N13 STI sing 420 n n N13 C14 STI sing 421 n n N13 H131 STI sing 422 n n C14 C19 STI doub 423 n y C14 C15 STI sing 424 n y C19 C18 STI sing 425 n y C19 C20 STI sing 426 n n C18 C17 STI doub 427 n y C18 H181 STI sing 428 n n C17 C16 STI sing 429 n y C17 H171 STI sing 430 n n C16 C15 STI doub 431 n y C16 N21 STI sing 432 n n C15 H151 STI sing 433 n n N21 C22 STI sing 434 n n N21 H211 STI sing 435 n n C22 C23 STI sing 436 n n C22 O29 STI doub 437 n n C23 C25 STI doub 438 n y C23 C29 STI sing 439 n y C25 C26 STI sing 440 n y C25 H251 STI sing 441 n n C26 C27 STI doub 442 n y C26 H261 STI sing 443 n n C27 C28 STI sing 444 n y C27 C46 STI sing 445 n n C28 C29 STI doub 446 n y C28 H281 STI sing 447 n n C29 H291 STI sing 448 n n C46 N48 STI sing 449 n n C46 H461 STI sing 450 n n C46 H462 STI sing 451 n n N48 C53 STI sing 452 n n N48 C49 STI sing 453 n n C53 C52 STI sing 454 n n C53 H531 STI sing 455 n n C53 H532 STI sing 456 n n C52 N51 STI sing 457 n n C52 H521 STI sing 458 n n C52 H522 STI sing 459 n n N51 C54 STI sing 460 n n N51 C50 STI sing 461 n n C54 H541 STI sing 462 n n C54 H542 STI sing 463 n n C54 H543 STI sing 464 n n C50 C49 STI sing 465 n n C50 H501 STI sing 466 n n C50 H502 STI sing 467 n n C49 H491 STI sing 468 n n C49 H492 STI sing 469 n n C20 H201 STI sing 470 n n C20 H202 STI sing 471 n n C20 H203 STI sing 472 n n # _atom_sites.entry_id 6NPU _atom_sites.fract_transf_matrix[1][1] 0.013317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STI A 1 601 3 STI STI . D 3 KWV A 1 602 542 KWV LIG . E 4 SO4 B 1 601 3 SO4 SO4 . F 2 STI B 1 602 4 STI STI . G 5 GOL B 1 603 359 GOL GOL . H 5 GOL B 1 604 359 GOL GOL . I 3 KWV B 1 605 530 KWV LIG . J 6 2PE B 1 606 170 2PE 2PE . K 7 HOH A 1 701 33 HOH HOH . K 7 HOH A 2 702 70 HOH HOH . K 7 HOH A 3 703 2 HOH HOH . K 7 HOH A 4 704 24 HOH HOH . K 7 HOH A 5 705 73 HOH HOH . K 7 HOH A 6 706 64 HOH HOH . K 7 HOH A 7 707 48 HOH HOH . K 7 HOH A 8 708 8 HOH HOH . K 7 HOH A 9 709 38 HOH HOH . K 7 HOH A 10 710 4 HOH HOH . K 7 HOH A 11 711 20 HOH HOH . K 7 HOH A 12 712 67 HOH HOH . K 7 HOH A 13 713 58 HOH HOH . K 7 HOH A 14 714 51 HOH HOH . K 7 HOH A 15 715 68 HOH HOH . K 7 HOH A 16 716 50 HOH HOH . K 7 HOH A 17 717 25 HOH HOH . K 7 HOH A 18 718 75 HOH HOH . K 7 HOH A 19 719 39 HOH HOH . K 7 HOH A 20 720 29 HOH HOH . K 7 HOH A 21 721 37 HOH HOH . K 7 HOH A 22 722 65 HOH HOH . K 7 HOH A 23 723 14 HOH HOH . K 7 HOH A 24 724 30 HOH HOH . K 7 HOH A 25 725 19 HOH HOH . K 7 HOH A 26 726 45 HOH HOH . K 7 HOH A 27 727 31 HOH HOH . K 7 HOH A 28 728 53 HOH HOH . K 7 HOH A 29 729 35 HOH HOH . K 7 HOH A 30 730 15 HOH HOH . K 7 HOH A 31 731 26 HOH HOH . K 7 HOH A 32 732 34 HOH HOH . K 7 HOH A 33 733 60 HOH HOH . K 7 HOH A 34 734 3 HOH HOH . K 7 HOH A 35 735 13 HOH HOH . K 7 HOH A 36 736 55 HOH HOH . K 7 HOH A 37 737 22 HOH HOH . K 7 HOH A 38 738 6 HOH HOH . K 7 HOH A 39 739 17 HOH HOH . K 7 HOH A 40 740 7 HOH HOH . K 7 HOH A 41 741 61 HOH HOH . K 7 HOH A 42 742 62 HOH HOH . L 7 HOH B 1 701 49 HOH HOH . L 7 HOH B 2 702 27 HOH HOH . L 7 HOH B 3 703 5 HOH HOH . L 7 HOH B 4 704 56 HOH HOH . L 7 HOH B 5 705 74 HOH HOH . L 7 HOH B 6 706 21 HOH HOH . L 7 HOH B 7 707 44 HOH HOH . L 7 HOH B 8 708 69 HOH HOH . L 7 HOH B 9 709 59 HOH HOH . L 7 HOH B 10 710 23 HOH HOH . L 7 HOH B 11 711 10 HOH HOH . L 7 HOH B 12 712 12 HOH HOH . L 7 HOH B 13 713 41 HOH HOH . L 7 HOH B 14 714 43 HOH HOH . L 7 HOH B 15 715 16 HOH HOH . L 7 HOH B 16 716 46 HOH HOH . L 7 HOH B 17 717 11 HOH HOH . L 7 HOH B 18 718 47 HOH HOH . L 7 HOH B 19 719 54 HOH HOH . L 7 HOH B 20 720 36 HOH HOH . L 7 HOH B 21 721 32 HOH HOH . L 7 HOH B 22 722 57 HOH HOH . L 7 HOH B 23 723 40 HOH HOH . L 7 HOH B 24 724 42 HOH HOH . L 7 HOH B 25 725 66 HOH HOH . L 7 HOH B 26 726 52 HOH HOH . L 7 HOH B 27 727 71 HOH HOH . L 7 HOH B 28 728 63 HOH HOH . L 7 HOH B 29 729 72 HOH HOH . L 7 HOH B 30 730 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . F 2 22.856 42 -3.673 1 38.13 ? C1 STI 602 B 1 HETATM 2 C C6 STI . . . F 2 21.91 42.201 -2.681 1 32.78 ? C6 STI 602 B 1 HETATM 3 C C5 STI . . . F 2 22.14 41.632 -1.466 1 33.73 ? C5 STI 602 B 1 HETATM 4 C C4 STI . . . F 2 23.315 40.905 -1.259 1 36.49 ? C4 STI 602 B 1 HETATM 5 N N3 STI . . . F 2 24.194 40.732 -2.223 1 34.88 ? N3 STI 602 B 1 HETATM 6 C C2 STI . . . F 2 23.997 41.254 -3.399 1 36.42 ? C2 STI 602 B 1 HETATM 7 C C7 STI . . . F 2 21.184 41.828 -0.326 1 32.47 ? C7 STI 602 B 1 HETATM 8 C C12 STI . . . F 2 20.064 42.605 -0.423 1 38.62 ? C12 STI 602 B 1 HETATM 9 C C11 STI . . . F 2 19.258 42.742 0.72 1 38.51 ? C11 STI 602 B 1 HETATM 10 N N10 STI . . . F 2 19.62 42.119 1.857 1 34.86 ? N10 STI 602 B 1 HETATM 11 C C9 STI . . . F 2 20.682 41.392 1.894 1 30.25 ? C9 STI 602 B 1 HETATM 12 N N8 STI . . . F 2 21.461 41.251 0.836 1 34.03 ? N8 STI 602 B 1 HETATM 13 N N13 STI . . . F 2 21.085 40.71 3.135 1 35.28 ? N13 STI 602 B 1 HETATM 14 C C14 STI . . . F 2 20.268 40.883 4.344 1 37.32 ? C14 STI 602 B 1 HETATM 15 C C19 STI . . . F 2 20.419 42.031 5.124 1 41.79 ? C19 STI 602 B 1 HETATM 16 C C18 STI . . . F 2 19.633 42.203 6.282 1 41.31 ? C18 STI 602 B 1 HETATM 17 C C17 STI . . . F 2 18.716 41.22 6.662 1 41.9 ? C17 STI 602 B 1 HETATM 18 C C16 STI . . . F 2 18.554 40.078 5.863 1 42.68 ? C16 STI 602 B 1 HETATM 19 C C15 STI . . . F 2 19.35 39.903 4.709 1 36.32 ? C15 STI 602 B 1 HETATM 20 N N21 STI . . . F 2 17.613 39.024 6.292 1 40.5 ? N21 STI 602 B 1 HETATM 21 C C22 STI . . . F 2 17.112 37.925 5.486 1 40.5 ? C22 STI 602 B 1 HETATM 22 C C23 STI . . . F 2 16.194 36.914 6.224 1 39.66 ? C23 STI 602 B 1 HETATM 23 C C25 STI . . . F 2 16.054 35.567 5.731 1 35.7 ? C25 STI 602 B 1 HETATM 24 C C26 STI . . . F 2 15.226 34.657 6.433 1 35.65 ? C26 STI 602 B 1 HETATM 25 C C27 STI . . . F 2 14.568 35.056 7.592 1 35.44 ? C27 STI 602 B 1 HETATM 26 C C28 STI . . . F 2 14.73 36.399 8.088 1 39.16 ? C28 STI 602 B 1 HETATM 27 C C29 STI . . . F 2 15.551 37.311 7.393 1 37.11 ? C29 STI 602 B 1 HETATM 28 C C46 STI . . . F 2 13.664 34.031 8.35 1 39.08 ? C46 STI 602 B 1 HETATM 29 N N48 STI . . . F 2 12.5 34.499 8.577 1 38.86 ? N48 STI 602 B 1 HETATM 30 C C53 STI . . . F 2 11.842 34.835 7.418 1 34.73 ? C53 STI 602 B 1 HETATM 31 C C52 STI . . . F 2 10.438 35.375 7.698 1 32.71 ? C52 STI 602 B 1 HETATM 32 N N51 STI . . . F 2 9.686 34.503 8.47 1 38.09 ? N51 STI 602 B 1 HETATM 33 C C54 STI . . . F 2 8.584 35.051 8.763 1 35.95 ? C54 STI 602 B 1 HETATM 34 C C50 STI . . . F 2 10.302 33.986 9.599 1 31.95 ? C50 STI 602 B 1 HETATM 35 C C49 STI . . . F 2 11.798 33.679 9.458 1 33.69 ? C49 STI 602 B 1 HETATM 36 O O29 STI . . . F 2 17.369 37.783 4.35 1 40.88 ? O29 STI 602 B 1 HETATM 37 C C20 STI . . . F 2 21.439 43.112 4.705 1 37.41 ? C20 STI 602 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 37 #