data_6NPU # _model_server_result.job_id gaLtg9JiiqmKMZykqs6FEw _model_server_result.datetime_utc '2024-11-26 22:50:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6npu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":606}' # _entry.id 6NPU # _exptl.entry_id 6NPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NPU _cell.length_a 75.093 _cell.length_b 95.643 _cell.length_c 115.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 6NPU _atom_sites.fract_transf_matrix[1][1] 0.013317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STI A 1 601 3 STI STI . D 3 KWV A 1 602 542 KWV LIG . E 4 SO4 B 1 601 3 SO4 SO4 . F 2 STI B 1 602 4 STI STI . G 5 GOL B 1 603 359 GOL GOL . H 5 GOL B 1 604 359 GOL GOL . I 3 KWV B 1 605 530 KWV LIG . J 6 2PE B 1 606 170 2PE 2PE . K 7 HOH A 1 701 33 HOH HOH . K 7 HOH A 2 702 70 HOH HOH . K 7 HOH A 3 703 2 HOH HOH . K 7 HOH A 4 704 24 HOH HOH . K 7 HOH A 5 705 73 HOH HOH . K 7 HOH A 6 706 64 HOH HOH . K 7 HOH A 7 707 48 HOH HOH . K 7 HOH A 8 708 8 HOH HOH . K 7 HOH A 9 709 38 HOH HOH . K 7 HOH A 10 710 4 HOH HOH . K 7 HOH A 11 711 20 HOH HOH . K 7 HOH A 12 712 67 HOH HOH . K 7 HOH A 13 713 58 HOH HOH . K 7 HOH A 14 714 51 HOH HOH . K 7 HOH A 15 715 68 HOH HOH . K 7 HOH A 16 716 50 HOH HOH . K 7 HOH A 17 717 25 HOH HOH . K 7 HOH A 18 718 75 HOH HOH . K 7 HOH A 19 719 39 HOH HOH . K 7 HOH A 20 720 29 HOH HOH . K 7 HOH A 21 721 37 HOH HOH . K 7 HOH A 22 722 65 HOH HOH . K 7 HOH A 23 723 14 HOH HOH . K 7 HOH A 24 724 30 HOH HOH . K 7 HOH A 25 725 19 HOH HOH . K 7 HOH A 26 726 45 HOH HOH . K 7 HOH A 27 727 31 HOH HOH . K 7 HOH A 28 728 53 HOH HOH . K 7 HOH A 29 729 35 HOH HOH . K 7 HOH A 30 730 15 HOH HOH . K 7 HOH A 31 731 26 HOH HOH . K 7 HOH A 32 732 34 HOH HOH . K 7 HOH A 33 733 60 HOH HOH . K 7 HOH A 34 734 3 HOH HOH . K 7 HOH A 35 735 13 HOH HOH . K 7 HOH A 36 736 55 HOH HOH . K 7 HOH A 37 737 22 HOH HOH . K 7 HOH A 38 738 6 HOH HOH . K 7 HOH A 39 739 17 HOH HOH . K 7 HOH A 40 740 7 HOH HOH . K 7 HOH A 41 741 61 HOH HOH . K 7 HOH A 42 742 62 HOH HOH . L 7 HOH B 1 701 49 HOH HOH . L 7 HOH B 2 702 27 HOH HOH . L 7 HOH B 3 703 5 HOH HOH . L 7 HOH B 4 704 56 HOH HOH . L 7 HOH B 5 705 74 HOH HOH . L 7 HOH B 6 706 21 HOH HOH . L 7 HOH B 7 707 44 HOH HOH . L 7 HOH B 8 708 69 HOH HOH . L 7 HOH B 9 709 59 HOH HOH . L 7 HOH B 10 710 23 HOH HOH . L 7 HOH B 11 711 10 HOH HOH . L 7 HOH B 12 712 12 HOH HOH . L 7 HOH B 13 713 41 HOH HOH . L 7 HOH B 14 714 43 HOH HOH . L 7 HOH B 15 715 16 HOH HOH . L 7 HOH B 16 716 46 HOH HOH . L 7 HOH B 17 717 11 HOH HOH . L 7 HOH B 18 718 47 HOH HOH . L 7 HOH B 19 719 54 HOH HOH . L 7 HOH B 20 720 36 HOH HOH . L 7 HOH B 21 721 32 HOH HOH . L 7 HOH B 22 722 57 HOH HOH . L 7 HOH B 23 723 40 HOH HOH . L 7 HOH B 24 724 42 HOH HOH . L 7 HOH B 25 725 66 HOH HOH . L 7 HOH B 26 726 52 HOH HOH . L 7 HOH B 27 727 71 HOH HOH . L 7 HOH B 28 728 63 HOH HOH . L 7 HOH B 29 729 72 HOH HOH . L 7 HOH B 30 730 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . J 6 -5.742 24.491 6.993 1 45.99 ? O1 2PE 606 B 1 HETATM 2 C C2 2PE . . . J 6 -6.41 24.986 5.862 1 41.61 ? C2 2PE 606 B 1 HETATM 3 C C3 2PE . . . J 6 -7.885 25.132 6.216 1 47.05 ? C3 2PE 606 B 1 HETATM 4 O O4 2PE . . . J 6 -8.306 26.39 5.764 1 52.1 ? O4 2PE 606 B 1 HETATM 5 C C5 2PE . . . J 6 -9.604 26.789 6.13 1 39.44 ? C5 2PE 606 B 1 HETATM 6 C C6 2PE . . . J 6 -9.512 27.45 7.498 1 44.4 ? C6 2PE 606 B 1 HETATM 7 O O7 2PE . . . J 6 -10.27 28.625 7.541 1 47.23 ? O7 2PE 606 B 1 HETATM 8 C C8 2PE . . . J 6 -9.811 29.594 8.456 1 45.98 ? C8 2PE 606 B 1 HETATM 9 C C9 2PE . . . J 6 -9.881 29.106 9.907 1 44.2 ? C9 2PE 606 B 1 HETATM 10 O O10 2PE . . . J 6 -8.623 28.581 10.248 1 55.56 ? O10 2PE 606 B 1 HETATM 11 C C11 2PE . . . J 6 -7.998 29.163 11.356 1 52.14 ? C11 2PE 606 B 1 HETATM 12 C C12 2PE . . . J 6 -7.669 28.037 12.336 1 54.49 ? C12 2PE 606 B 1 HETATM 13 O O13 2PE . . . J 6 -6.285 27.807 12.31 1 66.93 ? O13 2PE 606 B 1 HETATM 14 C C14 2PE . . . J 6 -5.957 26.558 11.769 1 65.27 ? C14 2PE 606 B 1 HETATM 15 C C15 2PE . . . J 6 -4.456 26.287 11.912 1 63.94 ? C15 2PE 606 B 1 HETATM 16 O O16 2PE . . . J 6 -3.893 25.674 10.769 1 73.2 ? O16 2PE 606 B 1 HETATM 17 C C17 2PE . . . J 6 -4.717 25.086 9.791 1 60.15 ? C17 2PE 606 B 1 HETATM 18 C C18 2PE . . . J 6 -5.128 23.635 10.07 1 63.02 ? C18 2PE 606 B 1 HETATM 19 O O19 2PE . . . J 6 -6.028 23.608 11.152 1 72.08 ? O19 2PE 606 B 1 HETATM 20 C C20 2PE . . . J 6 -7.394 23.317 10.923 1 63.67 ? C20 2PE 606 B 1 HETATM 21 C C21 2PE . . . J 6 -7.868 23.686 9.514 1 52.28 ? C21 2PE 606 B 1 HETATM 22 O O22 2PE . . . J 6 -8.773 24.755 9.6 1 53.99 ? O22 2PE 606 B 1 HETATM 23 C C23 2PE . . . J 6 -10.065 24.405 10 1 44.75 ? C23 2PE 606 B 1 HETATM 24 C C24 2PE . . . J 6 -10.621 25.551 10.841 1 44.36 ? C24 2PE 606 B 1 HETATM 25 O O25 2PE . . . J 6 -11.352 24.991 11.902 1 47.52 ? O25 2PE 606 B 1 HETATM 26 C C26 2PE . . . J 6 -11.537 25.819 13.023 1 46.54 ? C26 2PE 606 B 1 HETATM 27 C C27 2PE . . . J 6 -10.195 26.107 13.704 1 53.61 ? C27 2PE 606 B 1 HETATM 28 O O28 2PE . . . J 6 -10.05 25.283 14.83 1 60.48 ? O28 2PE 606 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #