data_6NQ0 # _model_server_result.job_id iQDZRi5RjuD0oFc8Iu50Yw _model_server_result.datetime_utc '2024-11-06 16:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 6NQ0 # _exptl.entry_id 6NQ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 746.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NQ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 126 A CYS 122 1_555 A SG CYS 184 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 627 A CYS 623 1_555 B SG CYS 627 B CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 126 B CYS 122 1_555 B SG CYS 184 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C25 H49 O19 P3' _chem_comp.formula_weight 746.566 _chem_comp.id EUJ _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NQ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EUJ A 1 1000 1000 EUJ EUJ . D 2 EUJ B 1 1000 1000 EUJ EUJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EUJ . . . C 2 105.491 141.429 145.254 1 55.02 ? C1 EUJ 1000 A 1 HETATM 2 C C2 EUJ . . . C 2 104.082 141.104 145.736 1 55.02 ? C2 EUJ 1000 A 1 HETATM 3 C C3 EUJ . . . C 2 104.022 139.707 146.335 1 55.02 ? C3 EUJ 1000 A 1 HETATM 4 C C4 EUJ . . . C 2 104.989 139.625 147.505 1 55.02 ? C4 EUJ 1000 A 1 HETATM 5 C C5 EUJ . . . C 2 106.414 139.973 147.089 1 55.02 ? C5 EUJ 1000 A 1 HETATM 6 C C6 EUJ . . . C 2 106.459 141.345 146.43 1 55.02 ? C6 EUJ 1000 A 1 HETATM 7 O O1 EUJ . . . C 2 105.508 142.734 144.742 1 55.02 ? O1 EUJ 1000 A 1 HETATM 8 O O2 EUJ . . . C 2 103.336 141.639 146.784 1 55.02 ? O2 EUJ 1000 A 1 HETATM 9 O O3 EUJ . . . C 2 102.728 139.526 146.846 1 55.02 ? O3 EUJ 1000 A 1 HETATM 10 O O4 EUJ . . . C 2 104.96 138.318 148.007 1 55.02 ? O4 EUJ 1000 A 1 HETATM 11 O O5 EUJ . . . C 2 107.192 140.04 148.252 1 55.02 ? O5 EUJ 1000 A 1 HETATM 12 O O6 EUJ . . . C 2 107.762 141.57 145.972 1 55.02 ? O6 EUJ 1000 A 1 HETATM 13 P P1 EUJ . . . C 2 105.163 143.975 145.768 1 55.02 ? P1 EUJ 1000 A 1 HETATM 14 O O11 EUJ . . . C 2 103.803 143.751 146.384 1 55.02 ? O11 EUJ 1000 A 1 HETATM 15 O O12 EUJ . . . C 2 106.203 144.025 146.861 1 55.02 ? O12 EUJ 1000 A 1 HETATM 16 O O13 EUJ . . . C 2 105.169 145.398 144.934 1 55.02 ? O13 EUJ 1000 A 1 HETATM 17 P P3 EUJ . . . C 2 101.966 138.094 146.565 1 55.02 ? P3 EUJ 1000 A 1 HETATM 18 O O31 EUJ . . . C 2 100.919 137.866 147.628 1 55.02 ? O31 EUJ 1000 A 1 HETATM 19 O O32 EUJ . . . C 2 101.308 138.132 145.208 1 55.02 ? O32 EUJ 1000 A 1 HETATM 20 O O33 EUJ . . . C 2 102.977 136.974 146.604 1 55.02 ? O33 EUJ 1000 A 1 HETATM 21 P P5 EUJ . . . C 2 108.524 139.082 148.361 1 55.02 ? P5 EUJ 1000 A 1 HETATM 22 O O51 EUJ . . . C 2 109.027 139.083 149.784 1 55.02 ? O51 EUJ 1000 A 1 HETATM 23 O O52 EUJ . . . C 2 109.601 139.611 147.446 1 55.02 ? O52 EUJ 1000 A 1 HETATM 24 O O53 EUJ . . . C 2 108.158 137.677 147.949 1 55.02 ? O53 EUJ 1000 A 1 HETATM 25 C C1A EUJ . . . C 2 107.79 145.246 141.456 1 55.02 ? C1A EUJ 1000 A 1 HETATM 26 C C1B EUJ . . . C 2 104.238 146.223 139.596 1 55.02 ? C1B EUJ 1000 A 1 HETATM 27 C C1C EUJ . . . C 2 106.179 145.618 143.99 1 55.02 ? C1C EUJ 1000 A 1 HETATM 28 C C2A EUJ . . . C 2 107.768 145.394 139.937 1 55.02 ? C2A EUJ 1000 A 1 HETATM 29 C C2B EUJ . . . C 2 104.613 146.48 138.139 1 55.02 ? C2B EUJ 1000 A 1 HETATM 30 C C2C EUJ . . . C 2 105.783 144.976 142.661 1 55.02 ? C2C EUJ 1000 A 1 HETATM 31 C C3A EUJ . . . C 2 109.176 145.179 139.387 1 55.02 ? C3A EUJ 1000 A 1 HETATM 32 C C3B EUJ . . . C 2 103.36 146.406 137.269 1 55.02 ? C3B EUJ 1000 A 1 HETATM 33 C C3C EUJ . . . C 2 105.225 146.042 141.719 1 55.02 ? C3C EUJ 1000 A 1 HETATM 34 C C4A EUJ . . . C 2 109.09 144.595 137.979 1 55.02 ? C4A EUJ 1000 A 1 HETATM 35 C C4B EUJ . . . C 2 103.527 147.313 136.052 1 55.02 ? C4B EUJ 1000 A 1 HETATM 36 C C5A EUJ . . . C 2 110.491 144.22 137.502 1 55.02 ? C5A EUJ 1000 A 1 HETATM 37 C C5B EUJ . . . C 2 102.157 147.607 135.443 1 55.02 ? C5B EUJ 1000 A 1 HETATM 38 C C6A EUJ . . . C 2 110.599 144.453 135.996 1 55.02 ? C6A EUJ 1000 A 1 HETATM 39 C C6B EUJ . . . C 2 102.157 149.009 134.838 1 55.02 ? C6B EUJ 1000 A 1 HETATM 40 C C7A EUJ . . . C 2 111.707 143.574 135.422 1 55.02 ? C7A EUJ 1000 A 1 HETATM 41 C C7B EUJ . . . C 2 101.634 148.945 133.405 1 55.02 ? C7B EUJ 1000 A 1 HETATM 42 C C8A EUJ . . . C 2 112.293 144.237 134.177 1 55.02 ? C8A EUJ 1000 A 1 HETATM 43 C C8B EUJ . . . C 2 102.116 147.655 132.744 1 55.02 ? C8B EUJ 1000 A 1 HETATM 44 O O1A EUJ . . . C 2 108.556 145.876 142.103 1 55.02 ? O1A EUJ 1000 A 1 HETATM 45 O O1B EUJ . . . C 2 103.208 146.624 140.022 1 55.02 ? O1B EUJ 1000 A 1 HETATM 46 O O2C EUJ . . . C 2 106.904 144.364 142.086 1 55.02 ? O2C EUJ 1000 A 1 HETATM 47 O O3C EUJ . . . C 2 105.111 145.514 140.428 1 55.02 ? O3C EUJ 1000 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 47 #