data_6NQ0
#
_model_server_result.job_id            Aw6irooWCUhKdNyvZyi6Fw 
_model_server_result.datetime_utc      '2024-11-06 16:30:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nq0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    6NQ0 
#
_exptl.entry_id    6NQ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NQ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NQ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 126 A CYS 122 1_555 A SG CYS 184 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 627 A CYS 623 1_555 B SG CYS 627 B CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 B SG CYS 126 B CYS 122 1_555 B SG CYS 184 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                EUJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6NQ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EUJ A 1 1000 1000 EUJ EUJ . 
D 2 EUJ B 1 1000 1000 EUJ EUJ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EUJ . . . D 2 151.316 115.377 145.238 1 55.02 ? C1 EUJ 1000 B 1 
HETATM 2 C C2 EUJ . . . D 2 152.725 115.702 145.72 1 55.02 ? C2 EUJ 1000 B 1 
HETATM 3 C C3 EUJ . . . D 2 152.786 117.099 146.318 1 55.02 ? C3 EUJ 1000 B 1 
HETATM 4 C C4 EUJ . . . D 2 151.819 117.182 147.488 1 55.02 ? C4 EUJ 1000 B 1 
HETATM 5 C C5 EUJ . . . D 2 150.394 116.834 147.073 1 55.02 ? C5 EUJ 1000 B 1 
HETATM 6 C C6 EUJ . . . D 2 150.349 115.461 146.414 1 55.02 ? C6 EUJ 1000 B 1 
HETATM 7 O O1 EUJ . . . D 2 151.299 114.072 144.726 1 55.02 ? O1 EUJ 1000 B 1 
HETATM 8 O O2 EUJ . . . D 2 153.472 115.167 146.768 1 55.02 ? O2 EUJ 1000 B 1 
HETATM 9 O O3 EUJ . . . D 2 154.08 117.28 146.829 1 55.02 ? O3 EUJ 1000 B 1 
HETATM 10 O O4 EUJ . . . D 2 151.848 118.489 147.99 1 55.02 ? O4 EUJ 1000 B 1 
HETATM 11 O O5 EUJ . . . D 2 149.616 116.767 148.236 1 55.02 ? O5 EUJ 1000 B 1 
HETATM 12 O O6 EUJ . . . D 2 149.046 115.236 145.957 1 55.02 ? O6 EUJ 1000 B 1 
HETATM 13 P P1 EUJ . . . D 2 151.644 112.831 145.753 1 55.02 ? P1 EUJ 1000 B 1 
HETATM 14 O O11 EUJ . . . D 2 153.004 113.055 146.368 1 55.02 ? O11 EUJ 1000 B 1 
HETATM 15 O O12 EUJ . . . D 2 150.605 112.781 146.846 1 55.02 ? O12 EUJ 1000 B 1 
HETATM 16 O O13 EUJ . . . D 2 151.638 111.408 144.919 1 55.02 ? O13 EUJ 1000 B 1 
HETATM 17 P P3 EUJ . . . D 2 154.842 118.712 146.547 1 55.02 ? P3 EUJ 1000 B 1 
HETATM 18 O O31 EUJ . . . D 2 155.889 118.939 147.61 1 55.02 ? O31 EUJ 1000 B 1 
HETATM 19 O O32 EUJ . . . D 2 155.5 118.674 145.19 1 55.02 ? O32 EUJ 1000 B 1 
HETATM 20 O O33 EUJ . . . D 2 153.831 119.832 146.586 1 55.02 ? O33 EUJ 1000 B 1 
HETATM 21 P P5 EUJ . . . D 2 148.284 117.725 148.346 1 55.02 ? P5 EUJ 1000 B 1 
HETATM 22 O O51 EUJ . . . D 2 147.782 117.724 149.769 1 55.02 ? O51 EUJ 1000 B 1 
HETATM 23 O O52 EUJ . . . D 2 147.207 117.196 147.432 1 55.02 ? O52 EUJ 1000 B 1 
HETATM 24 O O53 EUJ . . . D 2 148.65 119.13 147.934 1 55.02 ? O53 EUJ 1000 B 1 
HETATM 25 C C1A EUJ . . . D 2 149.015 111.559 141.442 1 55.02 ? C1A EUJ 1000 B 1 
HETATM 26 C C1B EUJ . . . D 2 152.567 110.581 139.581 1 55.02 ? C1B EUJ 1000 B 1 
HETATM 27 C C1C EUJ . . . D 2 150.627 111.188 143.975 1 55.02 ? C1C EUJ 1000 B 1 
HETATM 28 C C2A EUJ . . . D 2 149.037 111.411 139.923 1 55.02 ? C2A EUJ 1000 B 1 
HETATM 29 C C2B EUJ . . . D 2 152.191 110.324 138.124 1 55.02 ? C2B EUJ 1000 B 1 
HETATM 30 C C2C EUJ . . . D 2 151.022 111.829 142.646 1 55.02 ? C2C EUJ 1000 B 1 
HETATM 31 C C3A EUJ . . . D 2 147.629 111.627 139.373 1 55.02 ? C3A EUJ 1000 B 1 
HETATM 32 C C3B EUJ . . . D 2 153.444 110.398 137.253 1 55.02 ? C3B EUJ 1000 B 1 
HETATM 33 C C3C EUJ . . . D 2 151.58 110.763 141.704 1 55.02 ? C3C EUJ 1000 B 1 
HETATM 34 C C4A EUJ . . . D 2 147.714 112.21 137.965 1 55.02 ? C4A EUJ 1000 B 1 
HETATM 35 C C4B EUJ . . . D 2 153.276 109.491 136.036 1 55.02 ? C4B EUJ 1000 B 1 
HETATM 36 C C5A EUJ . . . D 2 146.313 112.585 137.488 1 55.02 ? C5A EUJ 1000 B 1 
HETATM 37 C C5B EUJ . . . D 2 154.645 109.197 135.427 1 55.02 ? C5B EUJ 1000 B 1 
HETATM 38 C C6A EUJ . . . D 2 146.205 112.352 135.982 1 55.02 ? C6A EUJ 1000 B 1 
HETATM 39 C C6B EUJ . . . D 2 154.645 107.795 134.822 1 55.02 ? C6B EUJ 1000 B 1 
HETATM 40 C C7A EUJ . . . D 2 145.097 113.231 135.409 1 55.02 ? C7A EUJ 1000 B 1 
HETATM 41 C C7B EUJ . . . D 2 155.168 107.859 133.389 1 55.02 ? C7B EUJ 1000 B 1 
HETATM 42 C C8A EUJ . . . D 2 144.509 112.568 134.165 1 55.02 ? C8A EUJ 1000 B 1 
HETATM 43 C C8B EUJ . . . D 2 154.686 109.148 132.728 1 55.02 ? C8B EUJ 1000 B 1 
HETATM 44 O O1A EUJ . . . D 2 148.249 110.929 142.089 1 55.02 ? O1A EUJ 1000 B 1 
HETATM 45 O O1B EUJ . . . D 2 153.597 110.18 140.006 1 55.02 ? O1B EUJ 1000 B 1 
HETATM 46 O O2C EUJ . . . D 2 149.901 112.441 142.071 1 55.02 ? O2C EUJ 1000 B 1 
HETATM 47 O O3C EUJ . . . D 2 151.694 111.291 140.413 1 55.02 ? O3C EUJ 1000 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           47 
#