data_6NQ2 # _model_server_result.job_id tzuVkAsf1Lc5HoB0_lpRnQ _model_server_result.datetime_utc '2024-11-21 13:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 6NQ2 # _exptl.entry_id 6NQ2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 746.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NQ2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 627 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 623 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 627 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 623 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H49 O19 P3' _chem_comp.formula_weight 746.566 _chem_comp.id EUJ _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8A C7A EUJ sing 83 n n C7A C6A EUJ sing 84 n n C8B C7B EUJ sing 85 n n C6A C5A EUJ sing 86 n n C7B C6B EUJ sing 87 n n C5A C4A EUJ sing 88 n n C6B C5B EUJ sing 89 n n C4A C3A EUJ sing 90 n n C5B C4B EUJ sing 91 n n C3A C2A EUJ sing 92 n n C4B C3B EUJ sing 93 n n C2A C1A EUJ sing 94 n n C3B C2B EUJ sing 95 n n O1A C1A EUJ doub 96 n n C1A O2C EUJ sing 97 n n C2B C1B EUJ sing 98 n n O2C C2C EUJ sing 99 n n C1B O3C EUJ sing 100 n n C1B O1B EUJ doub 101 n n O3C C3C EUJ sing 102 n n C1C C2C EUJ sing 103 n n C1C O13 EUJ sing 104 n n C2C C3C EUJ sing 105 n n O11 P1 EUJ doub 106 n n O12 P1 EUJ sing 107 n n O13 P1 EUJ sing 108 n n P1 O1 EUJ sing 109 n n O32 P3 EUJ doub 110 n n O31 P3 EUJ sing 111 n n O1 C1 EUJ sing 112 n n P3 O33 EUJ sing 113 n n P3 O3 EUJ sing 114 n n C2 C1 EUJ sing 115 n n C2 O2 EUJ sing 116 n n C2 C3 EUJ sing 117 n n C1 C6 EUJ sing 118 n n O3 C3 EUJ sing 119 n n C3 C4 EUJ sing 120 n n C6 O6 EUJ sing 121 n n C6 C5 EUJ sing 122 n n C4 C5 EUJ sing 123 n n C4 O4 EUJ sing 124 n n C5 O5 EUJ sing 125 n n O5 P5 EUJ sing 126 n n O53 P5 EUJ doub 127 n n O51 P5 EUJ sing 128 n n P5 O52 EUJ sing 129 n n C1 H1 EUJ sing 130 n n C2 H2 EUJ sing 131 n n C3 H3 EUJ sing 132 n n C4 H4 EUJ sing 133 n n C5 H5 EUJ sing 134 n n C6 H6 EUJ sing 135 n n O2 H7 EUJ sing 136 n n O4 H8 EUJ sing 137 n n O6 H9 EUJ sing 138 n n O12 H10 EUJ sing 139 n n O31 H11 EUJ sing 140 n n O33 H12 EUJ sing 141 n n O51 H13 EUJ sing 142 n n O52 H14 EUJ sing 143 n n C1C H15 EUJ sing 144 n n C1C H16 EUJ sing 145 n n C2A H17 EUJ sing 146 n n C2A H18 EUJ sing 147 n n C2B H19 EUJ sing 148 n n C2B H20 EUJ sing 149 n n C2C H21 EUJ sing 150 n n C3A H22 EUJ sing 151 n n C3A H23 EUJ sing 152 n n C3B H24 EUJ sing 153 n n C3B H25 EUJ sing 154 n n C3C H26 EUJ sing 155 n n C3C H27 EUJ sing 156 n n C4A H28 EUJ sing 157 n n C4A H29 EUJ sing 158 n n C4B H30 EUJ sing 159 n n C4B H31 EUJ sing 160 n n C5A H32 EUJ sing 161 n n C5A H33 EUJ sing 162 n n C5B H34 EUJ sing 163 n n C5B H35 EUJ sing 164 n n C6A H36 EUJ sing 165 n n C6A H37 EUJ sing 166 n n C6B H38 EUJ sing 167 n n C6B H39 EUJ sing 168 n n C7A H40 EUJ sing 169 n n C7A H41 EUJ sing 170 n n C7B H42 EUJ sing 171 n n C7B H43 EUJ sing 172 n n C8A H44 EUJ sing 173 n n C8A H45 EUJ sing 174 n n C8A H46 EUJ sing 175 n n C8B H47 EUJ sing 176 n n C8B H48 EUJ sing 177 n n C8B H49 EUJ sing 178 n n # _atom_sites.entry_id 6NQ2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EUJ A 1 1000 1000 EUJ EUJ . D 2 EUJ B 1 1000 1000 EUJ EUJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EUJ . . . D 2 150.558 117.1 145.15 1 55.02 ? C1 EUJ 1000 B 1 HETATM 2 C C2 EUJ . . . D 2 151.875 117.448 145.834 1 55.02 ? C2 EUJ 1000 B 1 HETATM 3 C C3 EUJ . . . D 2 151.757 118.75 146.612 1 55.02 ? C3 EUJ 1000 B 1 HETATM 4 C C4 EUJ . . . D 2 150.665 118.605 147.661 1 55.02 ? C4 EUJ 1000 B 1 HETATM 5 C C5 EUJ . . . D 2 149.327 118.224 147.038 1 55.02 ? C5 EUJ 1000 B 1 HETATM 6 C C6 EUJ . . . D 2 149.466 116.956 146.205 1 55.02 ? C6 EUJ 1000 B 1 HETATM 7 O O1 EUJ . . . D 2 150.701 115.87 144.485 1 55.02 ? O1 EUJ 1000 B 1 HETATM 8 O O2 EUJ . . . D 2 152.113 116.437 146.769 1 55.02 ? O2 EUJ 1000 B 1 HETATM 9 O O3 EUJ . . . D 2 152.973 119.015 147.254 1 55.02 ? O3 EUJ 1000 B 1 HETATM 10 O O4 EUJ . . . D 2 150.533 119.828 148.328 1 55.02 ? O4 EUJ 1000 B 1 HETATM 11 O O5 EUJ . . . D 2 148.435 117.946 148.082 1 55.02 ? O5 EUJ 1000 B 1 HETATM 12 O O6 EUJ . . . D 2 148.175 116.859 145.661 1 55.02 ? O6 EUJ 1000 B 1 HETATM 13 P P1 EUJ . . . D 2 149.892 114.551 145.06 1 55.02 ? P1 EUJ 1000 B 1 HETATM 14 O O11 EUJ . . . D 2 150.197 114.373 146.527 1 55.02 ? O11 EUJ 1000 B 1 HETATM 15 O O12 EUJ . . . D 2 148.408 114.754 144.879 1 55.02 ? O12 EUJ 1000 B 1 HETATM 16 O O13 EUJ . . . D 2 150.362 113.205 144.232 1 55.02 ? O13 EUJ 1000 B 1 HETATM 17 P P3 EUJ . . . D 2 153.792 120.389 146.869 1 55.02 ? P3 EUJ 1000 B 1 HETATM 18 O O31 EUJ . . . D 2 155.274 120.151 147.026 1 55.02 ? O31 EUJ 1000 B 1 HETATM 19 O O32 EUJ . . . D 2 153.498 120.776 145.44 1 55.02 ? O32 EUJ 1000 B 1 HETATM 20 O O33 EUJ . . . D 2 153.358 121.501 147.792 1 55.02 ? O33 EUJ 1000 B 1 HETATM 21 P P5 EUJ . . . D 2 147.099 118.871 148.287 1 55.02 ? P5 EUJ 1000 B 1 HETATM 22 O O51 EUJ . . . D 2 147.353 120.257 147.744 1 55.02 ? O51 EUJ 1000 B 1 HETATM 23 O O52 EUJ . . . D 2 146.782 118.956 149.76 1 55.02 ? O52 EUJ 1000 B 1 HETATM 24 O O53 EUJ . . . D 2 145.939 118.24 147.555 1 55.02 ? O53 EUJ 1000 B 1 HETATM 25 C C1A EUJ . . . D 2 149.845 111.337 140.717 1 55.02 ? C1A EUJ 1000 B 1 HETATM 26 C C1B EUJ . . . D 2 147.079 113.417 140.366 1 55.02 ? C1B EUJ 1000 B 1 HETATM 27 C C1C EUJ . . . D 2 149.437 112.169 144.071 1 55.02 ? C1C EUJ 1000 B 1 HETATM 28 C C2A EUJ . . . D 2 150.32 111.696 139.312 1 55.02 ? C2A EUJ 1000 B 1 HETATM 29 C C2B EUJ . . . D 2 146.528 112.44 139.329 1 55.02 ? C2B EUJ 1000 B 1 HETATM 30 C C2C EUJ . . . D 2 148.847 112.229 142.665 1 55.02 ? C2C EUJ 1000 B 1 HETATM 31 C C3A EUJ . . . D 2 151.701 111.094 139.068 1 55.02 ? C3A EUJ 1000 B 1 HETATM 32 C C3B EUJ . . . D 2 146.422 113.135 137.975 1 55.02 ? C3B EUJ 1000 B 1 HETATM 33 C C3C EUJ . . . D 2 147.962 113.467 142.543 1 55.02 ? C3C EUJ 1000 B 1 HETATM 34 C C4A EUJ . . . D 2 152.035 111.177 137.58 1 55.02 ? C4A EUJ 1000 B 1 HETATM 35 C C4B EUJ . . . D 2 145.634 112.25 137.013 1 55.02 ? C4B EUJ 1000 B 1 HETATM 36 C C5A EUJ . . . D 2 151.492 112.486 137.012 1 55.02 ? C5A EUJ 1000 B 1 HETATM 37 C C5B EUJ . . . D 2 144.206 112.777 136.89 1 55.02 ? C5B EUJ 1000 B 1 HETATM 38 C C6A EUJ . . . D 2 150.718 112.206 135.725 1 55.02 ? C6A EUJ 1000 B 1 HETATM 39 C C6B EUJ . . . D 2 143.652 112.42 135.514 1 55.02 ? C6B EUJ 1000 B 1 HETATM 40 C C7A EUJ . . . D 2 149.765 113.364 135.444 1 55.02 ? C7A EUJ 1000 B 1 HETATM 41 C C7B EUJ . . . D 2 143.123 113.683 134.84 1 55.02 ? C7B EUJ 1000 B 1 HETATM 42 C C8A EUJ . . . D 2 149.78 113.69 133.952 1 55.02 ? C8A EUJ 1000 B 1 HETATM 43 C C8B EUJ . . . D 2 142.926 113.419 133.349 1 55.02 ? C8B EUJ 1000 B 1 HETATM 44 O O1A EUJ . . . D 2 149.444 110.243 140.94 1 55.02 ? O1A EUJ 1000 B 1 HETATM 45 O O1B EUJ . . . D 2 147.691 114.369 140.013 1 55.02 ? O1B EUJ 1000 B 1 HETATM 46 O O2C EUJ . . . D 2 149.889 112.3 141.733 1 55.02 ? O2C EUJ 1000 B 1 HETATM 47 O O3C EUJ . . . D 2 146.86 113.184 141.728 1 55.02 ? O3C EUJ 1000 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #