data_6NQ2
#
_model_server_result.job_id            5MzEWepqSXw0id-fnN3u8w 
_model_server_result.datetime_utc      '2024-11-14 16:44:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nq2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    6NQ2 
#
_exptl.entry_id    6NQ2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NQ2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NQ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             627 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              623 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             627 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              623 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.037 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                EUJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6NQ2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EUJ A 1 1000 1000 EUJ EUJ . 
D 2 EUJ B 1 1000 1000 EUJ EUJ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EUJ . . . D 2 150.558 117.1 145.15 1 55.02 ? C1 EUJ 1000 B 1 
HETATM 2 C C2 EUJ . . . D 2 151.875 117.448 145.834 1 55.02 ? C2 EUJ 1000 B 1 
HETATM 3 C C3 EUJ . . . D 2 151.757 118.75 146.612 1 55.02 ? C3 EUJ 1000 B 1 
HETATM 4 C C4 EUJ . . . D 2 150.665 118.605 147.661 1 55.02 ? C4 EUJ 1000 B 1 
HETATM 5 C C5 EUJ . . . D 2 149.327 118.224 147.038 1 55.02 ? C5 EUJ 1000 B 1 
HETATM 6 C C6 EUJ . . . D 2 149.466 116.956 146.205 1 55.02 ? C6 EUJ 1000 B 1 
HETATM 7 O O1 EUJ . . . D 2 150.701 115.87 144.485 1 55.02 ? O1 EUJ 1000 B 1 
HETATM 8 O O2 EUJ . . . D 2 152.113 116.437 146.769 1 55.02 ? O2 EUJ 1000 B 1 
HETATM 9 O O3 EUJ . . . D 2 152.973 119.015 147.254 1 55.02 ? O3 EUJ 1000 B 1 
HETATM 10 O O4 EUJ . . . D 2 150.533 119.828 148.328 1 55.02 ? O4 EUJ 1000 B 1 
HETATM 11 O O5 EUJ . . . D 2 148.435 117.946 148.082 1 55.02 ? O5 EUJ 1000 B 1 
HETATM 12 O O6 EUJ . . . D 2 148.175 116.859 145.661 1 55.02 ? O6 EUJ 1000 B 1 
HETATM 13 P P1 EUJ . . . D 2 149.892 114.551 145.06 1 55.02 ? P1 EUJ 1000 B 1 
HETATM 14 O O11 EUJ . . . D 2 150.197 114.373 146.527 1 55.02 ? O11 EUJ 1000 B 1 
HETATM 15 O O12 EUJ . . . D 2 148.408 114.754 144.879 1 55.02 ? O12 EUJ 1000 B 1 
HETATM 16 O O13 EUJ . . . D 2 150.362 113.205 144.232 1 55.02 ? O13 EUJ 1000 B 1 
HETATM 17 P P3 EUJ . . . D 2 153.792 120.389 146.869 1 55.02 ? P3 EUJ 1000 B 1 
HETATM 18 O O31 EUJ . . . D 2 155.274 120.151 147.026 1 55.02 ? O31 EUJ 1000 B 1 
HETATM 19 O O32 EUJ . . . D 2 153.498 120.776 145.44 1 55.02 ? O32 EUJ 1000 B 1 
HETATM 20 O O33 EUJ . . . D 2 153.358 121.501 147.792 1 55.02 ? O33 EUJ 1000 B 1 
HETATM 21 P P5 EUJ . . . D 2 147.099 118.871 148.287 1 55.02 ? P5 EUJ 1000 B 1 
HETATM 22 O O51 EUJ . . . D 2 147.353 120.257 147.744 1 55.02 ? O51 EUJ 1000 B 1 
HETATM 23 O O52 EUJ . . . D 2 146.782 118.956 149.76 1 55.02 ? O52 EUJ 1000 B 1 
HETATM 24 O O53 EUJ . . . D 2 145.939 118.24 147.555 1 55.02 ? O53 EUJ 1000 B 1 
HETATM 25 C C1A EUJ . . . D 2 149.845 111.337 140.717 1 55.02 ? C1A EUJ 1000 B 1 
HETATM 26 C C1B EUJ . . . D 2 147.079 113.417 140.366 1 55.02 ? C1B EUJ 1000 B 1 
HETATM 27 C C1C EUJ . . . D 2 149.437 112.169 144.071 1 55.02 ? C1C EUJ 1000 B 1 
HETATM 28 C C2A EUJ . . . D 2 150.32 111.696 139.312 1 55.02 ? C2A EUJ 1000 B 1 
HETATM 29 C C2B EUJ . . . D 2 146.528 112.44 139.329 1 55.02 ? C2B EUJ 1000 B 1 
HETATM 30 C C2C EUJ . . . D 2 148.847 112.229 142.665 1 55.02 ? C2C EUJ 1000 B 1 
HETATM 31 C C3A EUJ . . . D 2 151.701 111.094 139.068 1 55.02 ? C3A EUJ 1000 B 1 
HETATM 32 C C3B EUJ . . . D 2 146.422 113.135 137.975 1 55.02 ? C3B EUJ 1000 B 1 
HETATM 33 C C3C EUJ . . . D 2 147.962 113.467 142.543 1 55.02 ? C3C EUJ 1000 B 1 
HETATM 34 C C4A EUJ . . . D 2 152.035 111.177 137.58 1 55.02 ? C4A EUJ 1000 B 1 
HETATM 35 C C4B EUJ . . . D 2 145.634 112.25 137.013 1 55.02 ? C4B EUJ 1000 B 1 
HETATM 36 C C5A EUJ . . . D 2 151.492 112.486 137.012 1 55.02 ? C5A EUJ 1000 B 1 
HETATM 37 C C5B EUJ . . . D 2 144.206 112.777 136.89 1 55.02 ? C5B EUJ 1000 B 1 
HETATM 38 C C6A EUJ . . . D 2 150.718 112.206 135.725 1 55.02 ? C6A EUJ 1000 B 1 
HETATM 39 C C6B EUJ . . . D 2 143.652 112.42 135.514 1 55.02 ? C6B EUJ 1000 B 1 
HETATM 40 C C7A EUJ . . . D 2 149.765 113.364 135.444 1 55.02 ? C7A EUJ 1000 B 1 
HETATM 41 C C7B EUJ . . . D 2 143.123 113.683 134.84 1 55.02 ? C7B EUJ 1000 B 1 
HETATM 42 C C8A EUJ . . . D 2 149.78 113.69 133.952 1 55.02 ? C8A EUJ 1000 B 1 
HETATM 43 C C8B EUJ . . . D 2 142.926 113.419 133.349 1 55.02 ? C8B EUJ 1000 B 1 
HETATM 44 O O1A EUJ . . . D 2 149.444 110.243 140.94 1 55.02 ? O1A EUJ 1000 B 1 
HETATM 45 O O1B EUJ . . . D 2 147.691 114.369 140.013 1 55.02 ? O1B EUJ 1000 B 1 
HETATM 46 O O2C EUJ . . . D 2 149.889 112.3 141.733 1 55.02 ? O2C EUJ 1000 B 1 
HETATM 47 O O3C EUJ . . . D 2 146.86 113.184 141.728 1 55.02 ? O3C EUJ 1000 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#