data_6NQU
#
_model_server_result.job_id            e-pMFZXiYlP5eIelwBRTwA 
_model_server_result.datetime_utc      '2024-12-23 06:48:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nqu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    6NQU 
#
_exptl.entry_id    6NQU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              925.772 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[(9~{S},11~{R})-15,16-dimethyl-11-oxidanyl-5,7-bis(oxidanylidene)-9-phenyl-2,4,6,12-tetrazabicyclo[11.4.0]heptadeca-1(17),13,15-trien-2-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NQU 
_cell.length_a            187.478 
_cell.length_b            187.478 
_cell.length_c            107.285 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H49 N9 O16 P2' 
_chem_comp.formula_weight    925.772 
_chem_comp.id                KWM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[(9~{S},11~{R})-15,16-dimethyl-11-oxidanyl-5,7-bis(oxidanylidene)-9-phenyl-2,4,6,12-tetrazabicyclo[11.4.0]heptadeca-1(17),13,15-trien-2-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GSK2879552 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 KWM doub 171 n n 
O2 C2 KWM doub 172 n n 
C1 N1 KWM sing 173 n n 
C1 C4 KWM sing 174 n n 
N1 C2 KWM sing 175 n n 
C2 N2 KWM sing 176 n n 
N2 C3 KWM sing 177 n n 
C3 N4 KWM sing 178 n n 
C4 C5 KWM sing 179 n n 
C5 C6 KWM sing 180 n n 
C5 C12 KWM sing 181 n n 
C6 C7 KWM doub 182 n y 
C6 C11 KWM sing 183 n y 
C7 C8 KWM sing 184 n y 
C8 C9 KWM doub 185 n y 
C9 C10 KWM sing 186 n y 
C10 C11 KWM doub 187 n y 
C12 C13 KWM sing 188 n n 
C13 O3 KWM sing 189 n n 
C13 N3 KWM sing 190 n n 
N3 C14 KWM sing 191 n n 
C14 C15 KWM doub 192 n y 
C14 C21 KWM sing 193 n y 
C15 C16 KWM sing 194 n y 
C16 C17 KWM sing 195 n n 
C16 C18 KWM doub 196 n y 
C18 C19 KWM sing 197 n n 
C18 C20 KWM sing 198 n y 
C20 C21 KWM doub 199 n y 
C21 N4 KWM sing 200 n n 
N4 C22 KWM sing 201 n n 
C22 C23 KWM sing 202 n n 
C23 O4 KWM sing 203 n n 
C23 C24 KWM sing 204 n n 
C24 O5 KWM sing 205 n n 
C24 C25 KWM sing 206 n n 
C25 O6 KWM sing 207 n n 
C25 C26 KWM sing 208 n n 
C26 O7 KWM sing 209 n n 
O7 P1 KWM sing 210 n n 
P1 O8 KWM doub 211 n n 
P1 O9 KWM sing 212 n n 
P1 O10 KWM sing 213 n n 
O10 P2 KWM sing 214 n n 
P2 O11 KWM doub 215 n n 
P2 O12 KWM sing 216 n n 
P2 O13 KWM sing 217 n n 
O13 C27 KWM sing 218 n n 
C27 C28 KWM sing 219 n n 
C28 O14 KWM sing 220 n n 
C28 C29 KWM sing 221 n n 
O14 C31 KWM sing 222 n n 
C29 O15 KWM sing 223 n n 
C29 C30 KWM sing 224 n n 
C30 O16 KWM sing 225 n n 
C30 C31 KWM sing 226 n n 
C31 N5 KWM sing 227 n n 
N5 C32 KWM sing 228 n y 
N5 C34 KWM sing 229 n y 
C32 N6 KWM doub 230 n y 
N6 C33 KWM sing 231 n y 
C33 C34 KWM doub 232 n y 
C33 C36 KWM sing 233 n y 
C34 N7 KWM sing 234 n y 
N7 C35 KWM doub 235 n y 
C35 N8 KWM sing 236 n y 
N8 C36 KWM doub 237 n y 
C36 N9 KWM sing 238 n n 
N1 H1 KWM sing 239 n n 
N2 H2 KWM sing 240 n n 
C3 H3 KWM sing 241 n n 
C3 H4 KWM sing 242 n n 
C4 H5 KWM sing 243 n n 
C4 H6 KWM sing 244 n n 
C5 H7 KWM sing 245 n n 
C7 H8 KWM sing 246 n n 
C8 H9 KWM sing 247 n n 
C9 H10 KWM sing 248 n n 
C10 H11 KWM sing 249 n n 
C11 H12 KWM sing 250 n n 
C12 H13 KWM sing 251 n n 
C12 H14 KWM sing 252 n n 
C13 H15 KWM sing 253 n n 
O3 H16 KWM sing 254 n n 
N3 H17 KWM sing 255 n n 
C15 H18 KWM sing 256 n n 
C17 H19 KWM sing 257 n n 
C17 H20 KWM sing 258 n n 
C17 H21 KWM sing 259 n n 
C19 H22 KWM sing 260 n n 
C19 H23 KWM sing 261 n n 
C19 H24 KWM sing 262 n n 
C20 H25 KWM sing 263 n n 
C22 H26 KWM sing 264 n n 
C22 H27 KWM sing 265 n n 
C23 H28 KWM sing 266 n n 
O4 H29 KWM sing 267 n n 
C24 H30 KWM sing 268 n n 
O5 H31 KWM sing 269 n n 
C25 H32 KWM sing 270 n n 
O6 H33 KWM sing 271 n n 
C26 H34 KWM sing 272 n n 
C26 H35 KWM sing 273 n n 
O9 H36 KWM sing 274 n n 
O12 H37 KWM sing 275 n n 
C27 H38 KWM sing 276 n n 
C27 H39 KWM sing 277 n n 
C28 H40 KWM sing 278 n n 
C29 H41 KWM sing 279 n n 
O15 H42 KWM sing 280 n n 
C30 H43 KWM sing 281 n n 
O16 H44 KWM sing 282 n n 
C31 H45 KWM sing 283 n n 
C32 H46 KWM sing 284 n n 
C35 H47 KWM sing 285 n n 
N9 H48 KWM sing 286 n n 
N9 H49 KWM sing 287 n n 
#
_atom_sites.entry_id                     6NQU 
_atom_sites.fract_transf_matrix[1][1]    0.005334 
_atom_sites.fract_transf_matrix[1][2]    0.00308 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           KWM 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       KWM 
_pdbx_nonpoly_scheme.auth_mon_id      FAJ 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 KWM . . . B 2 28.627 54.937 51.809 1 71.42 ? O1 KWM 901 A 1 
HETATM 2 O O2 KWM . . . B 2 24.561 53.932 51.824 1 56.46 ? O2 KWM 901 A 1 
HETATM 3 C C1 KWM . . . B 2 27.883 54.029 51.833 1 56.34 ? C1 KWM 901 A 1 
HETATM 4 N N1 KWM . . . B 2 26.645 54.314 51.812 1 56.06 ? N1 KWM 901 A 1 
HETATM 5 C C2 KWM . . . B 2 25.645 53.437 51.791 1 56.34 ? C2 KWM 901 A 1 
HETATM 6 N N2 KWM . . . B 2 25.652 51.953 51.726 1 55.69 ? N2 KWM 901 A 1 
HETATM 7 C C3 KWM . . . B 2 26.966 51.388 51.721 1 55.12 ? C3 KWM 901 A 1 
HETATM 8 C C4 KWM . . . B 2 28.454 52.715 51.599 1 56.1 ? C4 KWM 901 A 1 
HETATM 9 C C5 KWM . . . B 2 28.69 52.715 50.15 1 59.66 ? C5 KWM 901 A 1 
HETATM 10 C C6 KWM . . . B 2 27.884 53.643 49.186 1 58.64 ? C6 KWM 901 A 1 
HETATM 11 C C7 KWM . . . B 2 28.103 55.009 49.039 1 59.49 ? C7 KWM 901 A 1 
HETATM 12 C C8 KWM . . . B 2 27.342 55.78 48.161 1 59.48 ? C8 KWM 901 A 1 
HETATM 13 C C9 KWM . . . B 2 26.386 55.177 47.381 1 71.94 ? C9 KWM 901 A 1 
HETATM 14 C C10 KWM . . . B 2 26.181 53.8 47.489 1 67.38 ? C10 KWM 901 A 1 
HETATM 15 C C11 KWM . . . B 2 26.926 53.043 48.369 1 64.5 ? C11 KWM 901 A 1 
HETATM 16 C C12 KWM . . . B 2 30.245 52.97 49.873 1 56.6 ? C12 KWM 901 A 1 
HETATM 17 C C13 KWM . . . B 2 30.927 52.258 51.174 1 56.38 ? C13 KWM 901 A 1 
HETATM 18 O O3 KWM . . . B 2 31.93 53.069 51.59 1 58.16 ? O3 KWM 901 A 1 
HETATM 19 N N3 KWM . . . B 2 29.915 52.058 52.153 1 67.94 ? N3 KWM 901 A 1 
HETATM 20 C C14 KWM . . . B 2 29.664 50.661 52.073 1 54.33 ? C14 KWM 901 A 1 
HETATM 21 C C15 KWM . . . B 2 30.785 49.687 52.342 1 54.18 ? C15 KWM 901 A 1 
HETATM 22 C C16 KWM . . . B 2 30.709 48.539 52.336 1 54.21 ? C16 KWM 901 A 1 
HETATM 23 C C17 KWM . . . B 2 32.075 47.834 52.668 1 54.26 ? C17 KWM 901 A 1 
HETATM 24 C C18 KWM . . . B 2 29.928 48.012 52.15 1 54.15 ? C18 KWM 901 A 1 
HETATM 25 C C19 KWM . . . B 2 30.048 46.428 52.206 1 54.08 ? C19 KWM 901 A 1 
HETATM 26 C C20 KWM . . . B 2 28.899 48.376 51.899 1 53.94 ? C20 KWM 901 A 1 
HETATM 27 C C21 KWM . . . B 2 28.473 49.855 51.71 1 54.12 ? C21 KWM 901 A 1 
HETATM 28 N N4 KWM . . . B 2 27.475 50.152 51.603 1 54.08 ? N4 KWM 901 A 1 
HETATM 29 C C22 KWM . . . B 2 26.516 48.972 51.594 1 53.05 ? C22 KWM 901 A 1 
HETATM 30 C C23 KWM . . . B 2 25.428 49.057 52.666 1 52.11 ? C23 KWM 901 A 1 
HETATM 31 O O4 KWM . . . B 2 25.934 48.694 53.879 1 57.7 ? O4 KWM 901 A 1 
HETATM 32 C C24 KWM . . . B 2 24.243 48.144 52.259 1 54.12 ? C24 KWM 901 A 1 
HETATM 33 O O5 KWM . . . B 2 23.619 48.663 51.144 1 52.13 ? O5 KWM 901 A 1 
HETATM 34 C C25 KWM . . . B 2 23.201 48.063 53.397 1 51.2 ? C25 KWM 901 A 1 
HETATM 35 O O6 KWM . . . B 2 23.856 47.904 54.634 1 51.67 ? O6 KWM 901 A 1 
HETATM 36 C C26 KWM . . . B 2 22.312 46.867 53.099 1 50 ? C26 KWM 901 A 1 
HETATM 37 O O7 KWM . . . B 2 21.58 46.483 54.259 1 52.35 ? O7 KWM 901 A 1 
HETATM 38 P P1 KWM . . . B 2 20.82 44.987 54.143 1 47.26 ? P1 KWM 901 A 1 
HETATM 39 O O8 KWM . . . B 2 19.941 44.767 55.363 1 47.51 ? O8 KWM 901 A 1 
HETATM 40 O O9 KWM . . . B 2 19.977 44.959 52.885 1 45.92 ? O9 KWM 901 A 1 
HETATM 41 O O10 KWM . . . B 2 21.983 43.824 54.061 1 46.91 ? O10 KWM 901 A 1 
HETATM 42 P P2 KWM . . . B 2 22.783 43.345 55.415 1 46.11 ? P2 KWM 901 A 1 
HETATM 43 O O11 KWM . . . B 2 23.964 42.466 55.059 1 45.65 ? O11 KWM 901 A 1 
HETATM 44 O O12 KWM . . . B 2 23.27 44.568 56.192 1 45.72 ? O12 KWM 901 A 1 
HETATM 45 O O13 KWM . . . B 2 21.7 42.477 56.361 1 46.47 ? O13 KWM 901 A 1 
HETATM 46 C C27 KWM . . . B 2 21.464 41.113 56.013 1 45.31 ? C27 KWM 901 A 1 
HETATM 47 C C28 KWM . . . B 2 21.62 40.278 57.366 1 44.75 ? C28 KWM 901 A 1 
HETATM 48 O O14 KWM . . . B 2 21.373 39.033 57.168 1 44.88 ? O14 KWM 901 A 1 
HETATM 49 C C29 KWM . . . B 2 23.092 40.356 57.873 1 44.34 ? C29 KWM 901 A 1 
HETATM 50 O O15 KWM . . . B 2 23.095 40.762 59.16 1 44.47 ? O15 KWM 901 A 1 
HETATM 51 C C30 KWM . . . B 2 23.596 38.941 57.782 1 44.31 ? C30 KWM 901 A 1 
HETATM 52 O O16 KWM . . . B 2 24.603 38.669 58.865 1 44.6 ? O16 KWM 901 A 1 
HETATM 53 C C31 KWM . . . B 2 22.503 38.234 57.977 1 43.87 ? C31 KWM 901 A 1 
HETATM 54 N N5 KWM . . . B 2 22.633 36.916 57.39 1 43.92 ? N5 KWM 901 A 1 
HETATM 55 C C32 KWM . . . B 2 23.375 36.515 56.348 1 48.37 ? C32 KWM 901 A 1 
HETATM 56 N N6 KWM . . . B 2 23.162 35.207 56.169 1 46.57 ? N6 KWM 901 A 1 
HETATM 57 C C33 KWM . . . B 2 22.285 34.799 57.101 1 46.25 ? C33 KWM 901 A 1 
HETATM 58 C C34 KWM . . . B 2 21.955 35.857 57.85 1 47.07 ? C34 KWM 901 A 1 
HETATM 59 N N7 KWM . . . B 2 21.07 35.718 58.875 1 48.91 ? N7 KWM 901 A 1 
HETATM 60 C C35 KWM . . . B 2 20.519 34.508 59.138 1 43.57 ? C35 KWM 901 A 1 
HETATM 61 N N8 KWM . . . B 2 20.851 33.425 58.373 1 43.62 ? N8 KWM 901 A 1 
HETATM 62 C C36 KWM . . . B 2 21.712 33.559 57.372 1 47.78 ? C36 KWM 901 A 1 
HETATM 63 N N9 KWM . . . B 2 21.787 32.216 56.829 1 43.62 ? N9 KWM 901 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           63 
#