data_6NQY # _model_server_result.job_id EnvqLDvVys9lhL7jypdjvA _model_server_result.datetime_utc '2024-10-19 17:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":403}' # _entry.id 6NQY # _exptl.entry_id 6NQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.95 _cell.angle_gamma 90 _cell.entry_id 6NQY _cell.length_a 82.321 _cell.length_b 99.586 _cell.length_c 106.686 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 T N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6NQY _atom_sites.fract_transf_matrix[1][1] 0.012148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 401 GOL GOL . D 3 IOD A 1 402 2 IOD IOD . E 3 IOD A 1 403 3 IOD IOD . F 3 IOD A 1 404 6 IOD IOD . G 3 IOD A 1 405 7 IOD IOD . H 3 IOD A 1 406 10 IOD IOD . I 3 IOD A 1 407 13 IOD IOD . J 3 IOD A 1 408 14 IOD IOD . K 3 IOD A 1 409 17 IOD IOD . L 3 IOD A 1 410 19 IOD IOD . M 3 IOD A 1 411 22 IOD IOD . N 3 IOD A 1 412 25 IOD IOD . O 3 IOD A 1 413 26 IOD IOD . P 3 IOD A 1 414 27 IOD IOD . Q 3 IOD A 1 415 28 IOD IOD . R 3 IOD A 1 416 2 IOD IOD . S 3 IOD A 1 417 3 IOD IOD . T 2 GOL B 1 401 301 GOL GOL . U 4 PEG B 1 402 501 PEG PEG . V 2 GOL B 1 403 601 GOL GOL . W 2 GOL B 1 404 701 GOL GOL . X 3 IOD B 1 405 1 IOD IOD . Y 3 IOD B 1 406 4 IOD IOD . Z 3 IOD B 1 407 8 IOD IOD . AA 3 IOD B 1 408 15 IOD IOD . BA 3 IOD B 1 409 16 IOD IOD . CA 3 IOD B 1 410 18 IOD IOD . DA 3 IOD B 1 411 20 IOD IOD . EA 3 IOD B 1 412 21 IOD IOD . FA 3 IOD B 1 413 23 IOD IOD . GA 3 IOD B 1 414 24 IOD IOD . HA 3 IOD B 1 415 1 IOD IOD . IA 3 IOD B 1 416 4 IOD IOD . JA 3 IOD B 1 417 5 IOD IOD . KA 5 TRS B 1 418 1 TRS TRS . LA 5 TRS B 1 419 2 TRS TRS . MA 5 TRS B 1 420 3 TRS TRS . NA 6 HOH A 1 501 110 HOH HOH . NA 6 HOH A 2 502 2 HOH HOH . NA 6 HOH A 3 503 4 HOH HOH . NA 6 HOH A 4 504 77 HOH HOH . NA 6 HOH A 5 505 52 HOH HOH . NA 6 HOH A 6 506 137 HOH HOH . NA 6 HOH A 7 507 67 HOH HOH . NA 6 HOH A 8 508 53 HOH HOH . NA 6 HOH A 9 509 87 HOH HOH . NA 6 HOH A 10 510 20 HOH HOH . NA 6 HOH A 11 511 161 HOH HOH . NA 6 HOH A 12 512 66 HOH HOH . NA 6 HOH A 13 513 39 HOH HOH . NA 6 HOH A 14 514 15 HOH HOH . NA 6 HOH A 15 515 80 HOH HOH . NA 6 HOH A 16 516 11 HOH HOH . NA 6 HOH A 17 517 54 HOH HOH . NA 6 HOH A 18 518 92 HOH HOH . NA 6 HOH A 19 519 9 HOH HOH . NA 6 HOH A 20 520 26 HOH HOH . NA 6 HOH A 21 521 128 HOH HOH . NA 6 HOH A 22 522 93 HOH HOH . NA 6 HOH A 23 523 9 HOH HOH . NA 6 HOH A 24 524 95 HOH HOH . NA 6 HOH A 25 525 153 HOH HOH . NA 6 HOH A 26 526 135 HOH HOH . NA 6 HOH A 27 527 41 HOH HOH . NA 6 HOH A 28 528 115 HOH HOH . NA 6 HOH A 29 529 37 HOH HOH . NA 6 HOH A 30 530 20 HOH HOH . NA 6 HOH A 31 531 129 HOH HOH . NA 6 HOH A 32 532 72 HOH HOH . NA 6 HOH A 33 533 140 HOH HOH . NA 6 HOH A 34 534 88 HOH HOH . NA 6 HOH A 35 535 134 HOH HOH . NA 6 HOH A 36 536 83 HOH HOH . NA 6 HOH A 37 537 113 HOH HOH . NA 6 HOH A 38 538 68 HOH HOH . NA 6 HOH A 39 539 51 HOH HOH . NA 6 HOH A 40 540 63 HOH HOH . NA 6 HOH A 41 541 24 HOH HOH . NA 6 HOH A 42 542 160 HOH HOH . NA 6 HOH A 43 543 33 HOH HOH . NA 6 HOH A 44 544 154 HOH HOH . NA 6 HOH A 45 545 34 HOH HOH . NA 6 HOH A 46 546 132 HOH HOH . NA 6 HOH A 47 547 182 HOH HOH . NA 6 HOH A 48 548 62 HOH HOH . NA 6 HOH A 49 549 107 HOH HOH . NA 6 HOH A 50 550 12 HOH HOH . NA 6 HOH A 51 551 58 HOH HOH . NA 6 HOH A 52 552 69 HOH HOH . NA 6 HOH A 53 553 47 HOH HOH . NA 6 HOH A 54 554 32 HOH HOH . NA 6 HOH A 55 555 57 HOH HOH . NA 6 HOH A 56 556 55 HOH HOH . NA 6 HOH A 57 557 188 HOH HOH . NA 6 HOH A 58 558 49 HOH HOH . NA 6 HOH A 59 559 117 HOH HOH . NA 6 HOH A 60 560 73 HOH HOH . NA 6 HOH A 61 561 102 HOH HOH . NA 6 HOH A 62 562 61 HOH HOH . NA 6 HOH A 63 563 86 HOH HOH . NA 6 HOH A 64 564 165 HOH HOH . NA 6 HOH A 65 565 166 HOH HOH . NA 6 HOH A 66 566 169 HOH HOH . NA 6 HOH A 67 567 103 HOH HOH . NA 6 HOH A 68 568 43 HOH HOH . NA 6 HOH A 69 569 98 HOH HOH . NA 6 HOH A 70 570 2 HOH HOH . NA 6 HOH A 71 571 1 HOH HOH . NA 6 HOH A 72 572 157 HOH HOH . NA 6 HOH A 73 573 17 HOH HOH . NA 6 HOH A 74 574 27 HOH HOH . OA 6 HOH B 1 501 48 HOH HOH . OA 6 HOH B 2 502 38 HOH HOH . OA 6 HOH B 3 503 1 HOH HOH . OA 6 HOH B 4 504 143 HOH HOH . OA 6 HOH B 5 505 81 HOH HOH . OA 6 HOH B 6 506 14 HOH HOH . OA 6 HOH B 7 507 40 HOH HOH . OA 6 HOH B 8 508 109 HOH HOH . OA 6 HOH B 9 509 10 HOH HOH . OA 6 HOH B 10 510 4 HOH HOH . OA 6 HOH B 11 511 94 HOH HOH . OA 6 HOH B 12 512 17 HOH HOH . OA 6 HOH B 13 513 30 HOH HOH . OA 6 HOH B 14 514 202 HOH HOH . OA 6 HOH B 15 515 3 HOH HOH . OA 6 HOH B 16 516 46 HOH HOH . OA 6 HOH B 17 517 2 HOH HOH . OA 6 HOH B 18 518 21 HOH HOH . OA 6 HOH B 19 519 70 HOH HOH . OA 6 HOH B 20 520 164 HOH HOH . OA 6 HOH B 21 521 79 HOH HOH . OA 6 HOH B 22 522 151 HOH HOH . OA 6 HOH B 23 523 60 HOH HOH . OA 6 HOH B 24 524 16 HOH HOH . OA 6 HOH B 25 525 156 HOH HOH . OA 6 HOH B 26 526 76 HOH HOH . OA 6 HOH B 27 527 31 HOH HOH . OA 6 HOH B 28 528 19 HOH HOH . OA 6 HOH B 29 529 172 HOH HOH . OA 6 HOH B 30 530 44 HOH HOH . OA 6 HOH B 31 531 125 HOH HOH . OA 6 HOH B 32 532 56 HOH HOH . OA 6 HOH B 33 533 25 HOH HOH . OA 6 HOH B 34 534 91 HOH HOH . OA 6 HOH B 35 535 13 HOH HOH . OA 6 HOH B 36 536 18 HOH HOH . OA 6 HOH B 37 537 96 HOH HOH . OA 6 HOH B 38 538 19 HOH HOH . OA 6 HOH B 39 539 45 HOH HOH . OA 6 HOH B 40 540 35 HOH HOH . OA 6 HOH B 41 541 148 HOH HOH . OA 6 HOH B 42 542 29 HOH HOH . OA 6 HOH B 43 543 1 HOH HOH . OA 6 HOH B 44 544 10 HOH HOH . OA 6 HOH B 45 545 147 HOH HOH . OA 6 HOH B 46 546 171 HOH HOH . OA 6 HOH B 47 547 131 HOH HOH . OA 6 HOH B 48 548 78 HOH HOH . OA 6 HOH B 49 549 3 HOH HOH . OA 6 HOH B 50 550 99 HOH HOH . OA 6 HOH B 51 551 82 HOH HOH . OA 6 HOH B 52 552 28 HOH HOH . OA 6 HOH B 53 553 22 HOH HOH . OA 6 HOH B 54 554 126 HOH HOH . OA 6 HOH B 55 555 7 HOH HOH . OA 6 HOH B 56 556 175 HOH HOH . OA 6 HOH B 57 557 42 HOH HOH . OA 6 HOH B 58 558 36 HOH HOH . OA 6 HOH B 59 559 13 HOH HOH . OA 6 HOH B 60 560 59 HOH HOH . OA 6 HOH B 61 561 50 HOH HOH . OA 6 HOH B 62 562 106 HOH HOH . OA 6 HOH B 63 563 85 HOH HOH . OA 6 HOH B 64 564 193 HOH HOH . OA 6 HOH B 65 565 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . V 2 -12.919 -47.828 135.516 1 78.21 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . V 2 -13.695 -48.87 136.134 1 74.08 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . V 2 -11.529 -47.714 136.115 1 78.48 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . V 2 -10.596 -47.195 135.164 1 72.84 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . V 2 -10.929 -48.919 136.803 1 80.17 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . V 2 -11.739 -49.321 137.888 1 79.9 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #