data_6NQZ # _model_server_result.job_id wgMTJlkXOpCAIXPmjRPefw _model_server_result.datetime_utc '2025-07-12 18:54:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6NQZ # _exptl.entry_id 6NQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NQZ _cell.length_a 60.735 _cell.length_b 65.653 _cell.length_c 134.396 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 73 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 73 B CYS 73 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C8 H4 I3 N O4' _chem_comp.formula_weight 558.835 _chem_comp.id I3C _chem_comp.mon_nstd_flag . _chem_comp.name '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-Amino-2,4,6-triiodoisophthalic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I3 C6 I3C sing 165 n n I2 C4 I3C sing 166 n n I1 C2 I3C sing 167 n n O8 C7 I3C doub 168 n n O9 C7 I3C sing 169 n n C10 C3 I3C sing 170 n n C10 O11 I3C sing 171 n n C10 O12 I3C doub 172 n n N13 C5 I3C sing 173 n n C1 C6 I3C doub 174 n y C1 C2 I3C sing 175 n y C1 C7 I3C sing 176 n n C6 C5 I3C sing 177 n y C5 C4 I3C doub 178 n y C4 C3 I3C sing 179 n y C3 C2 I3C doub 180 n y O9 HO9 I3C sing 181 n n N13 HN13 I3C sing 182 n n N13 HN1A I3C sing 183 n n O11 HO11 I3C sing 184 n n # _atom_sites.entry_id 6NQZ _atom_sites.fract_transf_matrix[1][1] 0.016465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3C A 1 301 1 I3C I3C . D 3 IOD A 1 302 2 IOD I . E 4 GOL A 1 303 1 GOL GOL . F 4 GOL A 1 304 1 GOL GOL . G 3 IOD A 1 305 1 IOD IOD . H 3 IOD B 1 301 3 IOD I . I 5 HOH A 1 401 3 HOH HOH . I 5 HOH A 2 402 6 HOH HOH . I 5 HOH A 3 403 14 HOH HOH . I 5 HOH A 4 404 15 HOH HOH . I 5 HOH A 5 405 13 HOH HOH . I 5 HOH A 6 406 22 HOH HOH . I 5 HOH A 7 407 20 HOH HOH . I 5 HOH A 8 408 1 HOH HOH . I 5 HOH A 9 409 25 HOH HOH . I 5 HOH A 10 410 30 HOH HOH . I 5 HOH A 11 411 17 HOH HOH . I 5 HOH A 12 412 16 HOH HOH . I 5 HOH A 13 413 4 HOH HOH . I 5 HOH A 14 414 5 HOH HOH . J 5 HOH B 1 401 23 HOH HOH . J 5 HOH B 2 402 9 HOH HOH . J 5 HOH B 3 403 21 HOH HOH . J 5 HOH B 4 404 8 HOH HOH . J 5 HOH B 5 405 19 HOH HOH . J 5 HOH B 6 406 10 HOH HOH . J 5 HOH B 7 407 11 HOH HOH . J 5 HOH B 8 408 18 HOH HOH . J 5 HOH B 9 409 27 HOH HOH . J 5 HOH B 10 410 12 HOH HOH . J 5 HOH B 11 411 31 HOH HOH . J 5 HOH B 12 412 2 HOH HOH . J 5 HOH B 13 413 26 HOH HOH . J 5 HOH B 14 414 24 HOH HOH . J 5 HOH B 15 415 7 HOH HOH . J 5 HOH B 16 416 29 HOH HOH . J 5 HOH B 17 417 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I3 I3C . . . C 2 -24.754 3.372 -30.25 0.9 56.52 ? I3 I3C 301 A 1 HETATM 2 I I2 I3C . . . C 2 -21.565 3.243 -35.476 0.9 68.02 ? I2 I3C 301 A 1 HETATM 3 I I1 I3C . . . C 2 -18.963 1.114 -30.477 0.9 28.72 ? I1 I3C 301 A 1 HETATM 4 O O8 I3C . . . C 2 -21.981 0.795 -28.887 0.9 28.09 ? O8 I3C 301 A 1 HETATM 5 O O9 I3C . . . C 2 -21.69 2.908 -28.408 0.9 26.28 ? O9 I3C 301 A 1 HETATM 6 C C10 I3C . . . C 2 -19.381 1.902 -33.596 0.9 30.34 ? C10 I3C 301 A 1 HETATM 7 N N13 I3C . . . C 2 -23.963 3.73 -33.35 0.9 38.64 ? N13 I3C 301 A 1 HETATM 8 C C1 I3C . . . C 2 -21.825 2.296 -30.673 0.9 34.51 ? C1 I3C 301 A 1 HETATM 9 C C6 I3C . . . C 2 -22.931 2.886 -31.316 0.9 45.03 ? C6 I3C 301 A 1 HETATM 10 C C5 I3C . . . C 2 -22.881 3.174 -32.699 0.9 42.42 ? C5 I3C 301 A 1 HETATM 11 C C4 I3C . . . C 2 -21.696 2.855 -33.399 0.9 48.02 ? C4 I3C 301 A 1 HETATM 12 C C3 I3C . . . C 2 -20.617 2.228 -32.785 0.9 35.86 ? C3 I3C 301 A 1 HETATM 13 C C2 I3C . . . C 2 -20.667 1.972 -31.411 0.9 32.29 ? C2 I3C 301 A 1 HETATM 14 C C7 I3C . . . C 2 -21.859 1.981 -29.211 0.9 28.18 ? C7 I3C 301 A 1 HETATM 15 O O11 I3C . . . C 2 -18.532 2.795 -33.74 0.9 31.95 ? O11 I3C 301 A 1 HETATM 16 O O12 I3C . . . C 2 -19.301 0.776 -34.122 0.9 24.82 ? O12 I3C 301 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #