data_6NR2 # _model_server_result.job_id vPwbDZw0jWHOB4roMUu3vg _model_server_result.datetime_utc '2024-11-04 23:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1301}' # _entry.id 6NR2 # _exptl.entry_id 6NR2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1047.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl icosa-5,8,11,14-tetraenoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NR2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 650 A CYS 648 1_555 A SG CYS 1044 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 650 B CYS 648 1_555 B SG CYS 1044 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 650 C CYS 648 1_555 C SG CYS 1044 C CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 650 D CYS 648 1_555 D SG CYS 1044 D CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C47 H85 O19 P3' _chem_comp.formula_weight 1047.088 _chem_comp.id KXP _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl icosa-5,8,11,14-tetraenoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O45 P42 KXP doub 171 n n O40 P37 KXP doub 172 n n O44 P42 KXP sing 173 n n P42 O43 KXP sing 174 n n P42 O41 KXP sing 175 n n O41 C32 KXP sing 176 n n P37 O39 KXP sing 177 n n P37 O38 KXP sing 178 n n P37 O36 KXP sing 179 n n O36 C33 KXP sing 180 n n C32 C33 KXP sing 181 n n C32 C31 KXP sing 182 n n C33 C34 KXP sing 183 n n O46 C31 KXP sing 184 n n C31 C30 KXP sing 185 n n C34 O35 KXP sing 186 n n C34 C29 KXP sing 187 n n C30 O47 KXP sing 188 n n C30 C29 KXP sing 189 n n C29 O28 KXP sing 190 n n O28 P25 KXP sing 191 n n O26 P25 KXP doub 192 n n P25 O27 KXP sing 193 n n P25 O24 KXP sing 194 n n O24 C23 KXP sing 195 n n C23 C22 KXP sing 196 n n O48 C22 KXP sing 197 n n O48 C49 KXP sing 198 n n C22 C21 KXP sing 199 n n C21 O20 KXP sing 200 n n C49 O50 KXP doub 201 n n O20 C18 KXP sing 202 n n C21 H211 KXP sing 203 n n C21 H212 KXP sing 204 n n C22 H221 KXP sing 205 n n C23 H231 KXP sing 206 n n C23 H232 KXP sing 207 n n C29 H291 KXP sing 208 n n C30 H301 KXP sing 209 n n C31 H311 KXP sing 210 n n C32 H321 KXP sing 211 n n C33 H331 KXP sing 212 n n C34 H341 KXP sing 213 n n O27 H7 KXP sing 214 n n O35 H351 KXP sing 215 n n O38 H8 KXP sing 216 n n O39 H9 KXP sing 217 n n O43 H10 KXP sing 218 n n O44 H11 KXP sing 219 n n O46 H461 KXP sing 220 n n O47 H471 KXP sing 221 n n C18 C1 KXP sing 222 n n C1 C2 KXP sing 223 n n C2 C4 KXP sing 224 n n C4 C5 KXP sing 225 n n C5 C3 KXP sing 226 n n C3 C6 KXP sing 227 n n C6 C7 KXP sing 228 n n C7 C8 KXP sing 229 n n C8 C9 KXP sing 230 n n C9 C10 KXP sing 231 n n C10 C11 KXP sing 232 n n C11 C12 KXP sing 233 n n C12 C13 KXP sing 234 n n C13 C14 KXP sing 235 n n C14 C15 KXP sing 236 n n C1 H3 KXP sing 237 n n C1 H12 KXP sing 238 n n C2 H13 KXP sing 239 n n C2 H14 KXP sing 240 n n C4 H15 KXP sing 241 n n C4 H16 KXP sing 242 n n C5 H17 KXP sing 243 n n C5 H18 KXP sing 244 n n C3 H19 KXP sing 245 n n C3 H20 KXP sing 246 n n C6 H21 KXP sing 247 n n C6 H22 KXP sing 248 n n C7 H23 KXP sing 249 n n C7 H24 KXP sing 250 n n C8 H25 KXP sing 251 n n C8 H26 KXP sing 252 n n C9 H27 KXP sing 253 n n C9 H28 KXP sing 254 n n C10 H29 KXP sing 255 n n C10 H30 KXP sing 256 n n C11 H31 KXP sing 257 n n C11 H32 KXP sing 258 n n C12 H33 KXP sing 259 n n C12 H34 KXP sing 260 n n C13 H35 KXP sing 261 n n C13 H36 KXP sing 262 n n C14 H37 KXP sing 263 n n C14 H38 KXP sing 264 n n C15 H39 KXP sing 265 n n C15 H40 KXP sing 266 n n C18 O1 KXP doub 267 n n C15 C16 KXP sing 268 n n C16 C19 KXP sing 269 n n C49 C17 KXP sing 270 n n C17 C20 KXP sing 271 n n C20 C24 KXP sing 272 n n C24 C25 KXP sing 273 n n C25 C26 KXP doub 274 n n C26 C27 KXP sing 275 n n C27 C28 KXP sing 276 n n C28 C35 KXP doub 277 n n C35 C36 KXP sing 278 n n C36 C37 KXP sing 279 n n C37 C38 KXP doub 280 n n C38 C39 KXP sing 281 n n C39 C40 KXP sing 282 n n C40 C41 KXP doub 283 n n C41 C42 KXP sing 284 n n C42 C43 KXP sing 285 n n C43 C44 KXP sing 286 n n C44 C45 KXP sing 287 n n C45 C46 KXP sing 288 n n C16 H1 KXP sing 289 n n C16 H2 KXP sing 290 n n C19 H4 KXP sing 291 n n C19 H5 KXP sing 292 n n C19 H6 KXP sing 293 n n C17 H41 KXP sing 294 n n C17 H42 KXP sing 295 n n C20 H43 KXP sing 296 n n C20 H44 KXP sing 297 n n C24 H45 KXP sing 298 n n C24 H46 KXP sing 299 n n C25 H47 KXP sing 300 n n C26 H49 KXP sing 301 n n C27 H51 KXP sing 302 n n C27 H52 KXP sing 303 n n C28 H53 KXP sing 304 n n C35 H55 KXP sing 305 n n C36 H57 KXP sing 306 n n C36 H58 KXP sing 307 n n C37 H59 KXP sing 308 n n C38 H61 KXP sing 309 n n C39 H63 KXP sing 310 n n C39 H64 KXP sing 311 n n C40 H65 KXP sing 312 n n C41 H67 KXP sing 313 n n C42 H69 KXP sing 314 n n C42 H70 KXP sing 315 n n C43 H71 KXP sing 316 n n C43 H72 KXP sing 317 n n C44 H73 KXP sing 318 n n C44 H74 KXP sing 319 n n C45 H75 KXP sing 320 n n C45 H76 KXP sing 321 n n C46 H77 KXP sing 322 n n C46 H78 KXP sing 323 n n C46 H79 KXP sing 324 n n # _atom_sites.entry_id 6NR2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KXP A 1 1301 1201 KXP LIG . F 3 KXS A 1 1302 1202 KXS WS1 . G 2 KXP B 1 1301 1201 KXP LIG . H 3 KXS B 1 1302 1202 KXS WS1 . I 2 KXP C 1 1301 1201 KXP LIG . J 3 KXS C 1 1302 1202 KXS WS1 . K 2 KXP D 1 1301 1201 KXP LIG . L 3 KXS D 1 1302 1202 KXS WS1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 KXP . . . E 2 125.659 112.073 162.415 1 116.76 ? C21 KXP 1301 A 1 HETATM 2 C C22 KXP . . . E 2 125.567 113.527 161.954 1 116.76 ? C22 KXP 1301 A 1 HETATM 3 C C18 KXP . . . E 2 126.364 110.767 164.229 1 116.76 ? C18 KXP 1301 A 1 HETATM 4 C C23 KXP . . . E 2 126.297 113.775 160.635 1 116.76 ? C23 KXP 1301 A 1 HETATM 5 C C29 KXP . . . E 2 124.598 115.749 156.697 1 116.76 ? C29 KXP 1301 A 1 HETATM 6 C C30 KXP . . . E 2 125.71 114.734 156.381 1 116.76 ? C30 KXP 1301 A 1 HETATM 7 C C31 KXP . . . E 2 125.698 114.306 154.905 1 116.76 ? C31 KXP 1301 A 1 HETATM 8 C C32 KXP . . . E 2 125.728 115.512 153.956 1 116.76 ? C32 KXP 1301 A 1 HETATM 9 C C33 KXP . . . E 2 124.615 116.523 154.272 1 116.76 ? C33 KXP 1301 A 1 HETATM 10 C C34 KXP . . . E 2 124.629 116.953 155.748 1 116.76 ? C34 KXP 1301 A 1 HETATM 11 C C49 KXP . . . E 2 123.5 113.983 162.961 1 116.76 ? C49 KXP 1301 A 1 HETATM 12 O O20 KXP . . . E 2 126.259 112.047 163.678 1 116.76 ? O20 KXP 1301 A 1 HETATM 13 O O24 KXP . . . E 2 125.917 115.028 160.142 1 116.76 ? O24 KXP 1301 A 1 HETATM 14 O O26 KXP . . . E 2 124.197 113.778 158.679 1 116.76 ? O26 KXP 1301 A 1 HETATM 15 O O27 KXP . . . E 2 123.402 115.612 160.127 1 116.76 ? O27 KXP 1301 A 1 HETATM 16 O O28 KXP . . . E 2 124.762 116.205 158.016 1 116.76 ? O28 KXP 1301 A 1 HETATM 17 O O35 KXP . . . E 2 123.504 117.76 155.998 1 116.76 ? O35 KXP 1301 A 1 HETATM 18 O O36 KXP . . . E 2 124.789 117.658 153.467 1 116.76 ? O36 KXP 1301 A 1 HETATM 19 O O38 KXP . . . E 2 123.227 119.688 153.156 1 116.76 ? O38 KXP 1301 A 1 HETATM 20 O O39 KXP . . . E 2 122.264 117.424 152.991 1 116.76 ? O39 KXP 1301 A 1 HETATM 21 O O40 KXP . . . E 2 123.727 118.274 151.199 1 116.76 ? O40 KXP 1301 A 1 HETATM 22 O O41 KXP . . . E 2 125.567 115.056 152.637 1 116.76 ? O41 KXP 1301 A 1 HETATM 23 O O43 KXP . . . E 2 127.915 114.01 152.415 1 116.76 ? O43 KXP 1301 A 1 HETATM 24 O O44 KXP . . . E 2 127.519 116.234 151.428 1 116.76 ? O44 KXP 1301 A 1 HETATM 25 O O45 KXP . . . E 2 126.528 114.23 150.389 1 116.76 ? O45 KXP 1301 A 1 HETATM 26 O O46 KXP . . . E 2 126.824 113.502 154.656 1 116.76 ? O46 KXP 1301 A 1 HETATM 27 O O47 KXP . . . E 2 126.953 115.316 156.675 1 116.76 ? O47 KXP 1301 A 1 HETATM 28 O O48 KXP . . . E 2 124.215 113.834 161.769 1 116.76 ? O48 KXP 1301 A 1 HETATM 29 O O50 KXP . . . E 2 123.764 113.308 163.898 1 116.76 ? O50 KXP 1301 A 1 HETATM 30 P P25 KXP . . . E 2 124.535 115.136 159.249 1 116.76 ? P25 KXP 1301 A 1 HETATM 31 P P37 KXP . . . E 2 123.474 118.274 152.686 1 116.76 ? P37 KXP 1301 A 1 HETATM 32 P P42 KXP . . . E 2 126.911 114.879 151.697 1 116.76 ? P42 KXP 1301 A 1 HETATM 33 H H211 KXP . . . E 2 126.196 111.564 161.788 1 116.76 ? H211 KXP 1301 A 1 HETATM 34 H H212 KXP . . . E 2 124.769 111.69 162.469 1 116.76 ? H212 KXP 1301 A 1 HETATM 35 H H221 KXP . . . E 2 125.937 114.106 162.64 1 116.76 ? H221 KXP 1301 A 1 HETATM 36 H H231 KXP . . . E 2 127.256 113.761 160.786 1 116.76 ? H231 KXP 1301 A 1 HETATM 37 H H232 KXP . . . E 2 126.058 113.086 159.995 1 116.76 ? H232 KXP 1301 A 1 HETATM 38 H H291 KXP . . . E 2 123.738 115.308 156.616 1 116.76 ? H291 KXP 1301 A 1 HETATM 39 H H301 KXP . . . E 2 125.585 113.949 156.936 1 116.76 ? H301 KXP 1301 A 1 HETATM 40 H H311 KXP . . . E 2 124.894 113.792 154.734 1 116.76 ? H311 KXP 1301 A 1 HETATM 41 H H321 KXP . . . E 2 126.587 115.955 154.038 1 116.76 ? H321 KXP 1301 A 1 HETATM 42 H H331 KXP . . . E 2 123.757 116.117 154.072 1 116.76 ? H331 KXP 1301 A 1 HETATM 43 H H341 KXP . . . E 2 125.435 117.466 155.917 1 116.76 ? H341 KXP 1301 A 1 HETATM 44 H H351 KXP . . . E 2 123.236 118.105 155.269 1 116.76 ? H351 KXP 1301 A 1 HETATM 45 H H461 KXP . . . E 2 126.663 112.704 154.902 1 116.76 ? H461 KXP 1301 A 1 HETATM 46 H H471 KXP . . . E 2 127.199 115.08 157.454 1 116.76 ? H471 KXP 1301 A 1 HETATM 47 C C17 KXP . . . E 2 122.377 115.013 163.054 1 116.76 ? C17 KXP 1301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 47 #