data_6NR2
#
_model_server_result.job_id            jxivmezWL2WZrmmLtfpE-w 
_model_server_result.datetime_utc      '2024-11-04 23:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nr2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1301}' 
#
_entry.id    6NR2 
#
_exptl.entry_id    6NR2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1047.088 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl icosa-5,8,11,14-tetraenoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NR2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NR2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 650 A CYS 648 1_555 A SG CYS 1044 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 650 B CYS 648 1_555 B SG CYS 1044 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 650 C CYS 648 1_555 C SG CYS 1044 C CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 650 D CYS 648 1_555 D SG CYS 1044 D CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C47 H85 O19 P3' 
_chem_comp.formula_weight    1047.088 
_chem_comp.id                KXP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl icosa-5,8,11,14-tetraenoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O45 P42 KXP doub 171 n n 
O40 P37 KXP doub 172 n n 
O44 P42 KXP sing 173 n n 
P42 O43 KXP sing 174 n n 
P42 O41 KXP sing 175 n n 
O41 C32 KXP sing 176 n n 
P37 O39 KXP sing 177 n n 
P37 O38 KXP sing 178 n n 
P37 O36 KXP sing 179 n n 
O36 C33 KXP sing 180 n n 
C32 C33 KXP sing 181 n n 
C32 C31 KXP sing 182 n n 
C33 C34 KXP sing 183 n n 
O46 C31 KXP sing 184 n n 
C31 C30 KXP sing 185 n n 
C34 O35 KXP sing 186 n n 
C34 C29 KXP sing 187 n n 
C30 O47 KXP sing 188 n n 
C30 C29 KXP sing 189 n n 
C29 O28 KXP sing 190 n n 
O28 P25 KXP sing 191 n n 
O26 P25 KXP doub 192 n n 
P25 O27 KXP sing 193 n n 
P25 O24 KXP sing 194 n n 
O24 C23 KXP sing 195 n n 
C23 C22 KXP sing 196 n n 
O48 C22 KXP sing 197 n n 
O48 C49 KXP sing 198 n n 
C22 C21 KXP sing 199 n n 
C21 O20 KXP sing 200 n n 
C49 O50 KXP doub 201 n n 
O20 C18 KXP sing 202 n n 
C21 H211 KXP sing 203 n n 
C21 H212 KXP sing 204 n n 
C22 H221 KXP sing 205 n n 
C23 H231 KXP sing 206 n n 
C23 H232 KXP sing 207 n n 
C29 H291 KXP sing 208 n n 
C30 H301 KXP sing 209 n n 
C31 H311 KXP sing 210 n n 
C32 H321 KXP sing 211 n n 
C33 H331 KXP sing 212 n n 
C34 H341 KXP sing 213 n n 
O27 H7 KXP sing 214 n n 
O35 H351 KXP sing 215 n n 
O38 H8 KXP sing 216 n n 
O39 H9 KXP sing 217 n n 
O43 H10 KXP sing 218 n n 
O44 H11 KXP sing 219 n n 
O46 H461 KXP sing 220 n n 
O47 H471 KXP sing 221 n n 
C18 C1 KXP sing 222 n n 
C1 C2 KXP sing 223 n n 
C2 C4 KXP sing 224 n n 
C4 C5 KXP sing 225 n n 
C5 C3 KXP sing 226 n n 
C3 C6 KXP sing 227 n n 
C6 C7 KXP sing 228 n n 
C7 C8 KXP sing 229 n n 
C8 C9 KXP sing 230 n n 
C9 C10 KXP sing 231 n n 
C10 C11 KXP sing 232 n n 
C11 C12 KXP sing 233 n n 
C12 C13 KXP sing 234 n n 
C13 C14 KXP sing 235 n n 
C14 C15 KXP sing 236 n n 
C1 H3 KXP sing 237 n n 
C1 H12 KXP sing 238 n n 
C2 H13 KXP sing 239 n n 
C2 H14 KXP sing 240 n n 
C4 H15 KXP sing 241 n n 
C4 H16 KXP sing 242 n n 
C5 H17 KXP sing 243 n n 
C5 H18 KXP sing 244 n n 
C3 H19 KXP sing 245 n n 
C3 H20 KXP sing 246 n n 
C6 H21 KXP sing 247 n n 
C6 H22 KXP sing 248 n n 
C7 H23 KXP sing 249 n n 
C7 H24 KXP sing 250 n n 
C8 H25 KXP sing 251 n n 
C8 H26 KXP sing 252 n n 
C9 H27 KXP sing 253 n n 
C9 H28 KXP sing 254 n n 
C10 H29 KXP sing 255 n n 
C10 H30 KXP sing 256 n n 
C11 H31 KXP sing 257 n n 
C11 H32 KXP sing 258 n n 
C12 H33 KXP sing 259 n n 
C12 H34 KXP sing 260 n n 
C13 H35 KXP sing 261 n n 
C13 H36 KXP sing 262 n n 
C14 H37 KXP sing 263 n n 
C14 H38 KXP sing 264 n n 
C15 H39 KXP sing 265 n n 
C15 H40 KXP sing 266 n n 
C18 O1 KXP doub 267 n n 
C15 C16 KXP sing 268 n n 
C16 C19 KXP sing 269 n n 
C49 C17 KXP sing 270 n n 
C17 C20 KXP sing 271 n n 
C20 C24 KXP sing 272 n n 
C24 C25 KXP sing 273 n n 
C25 C26 KXP doub 274 n n 
C26 C27 KXP sing 275 n n 
C27 C28 KXP sing 276 n n 
C28 C35 KXP doub 277 n n 
C35 C36 KXP sing 278 n n 
C36 C37 KXP sing 279 n n 
C37 C38 KXP doub 280 n n 
C38 C39 KXP sing 281 n n 
C39 C40 KXP sing 282 n n 
C40 C41 KXP doub 283 n n 
C41 C42 KXP sing 284 n n 
C42 C43 KXP sing 285 n n 
C43 C44 KXP sing 286 n n 
C44 C45 KXP sing 287 n n 
C45 C46 KXP sing 288 n n 
C16 H1 KXP sing 289 n n 
C16 H2 KXP sing 290 n n 
C19 H4 KXP sing 291 n n 
C19 H5 KXP sing 292 n n 
C19 H6 KXP sing 293 n n 
C17 H41 KXP sing 294 n n 
C17 H42 KXP sing 295 n n 
C20 H43 KXP sing 296 n n 
C20 H44 KXP sing 297 n n 
C24 H45 KXP sing 298 n n 
C24 H46 KXP sing 299 n n 
C25 H47 KXP sing 300 n n 
C26 H49 KXP sing 301 n n 
C27 H51 KXP sing 302 n n 
C27 H52 KXP sing 303 n n 
C28 H53 KXP sing 304 n n 
C35 H55 KXP sing 305 n n 
C36 H57 KXP sing 306 n n 
C36 H58 KXP sing 307 n n 
C37 H59 KXP sing 308 n n 
C38 H61 KXP sing 309 n n 
C39 H63 KXP sing 310 n n 
C39 H64 KXP sing 311 n n 
C40 H65 KXP sing 312 n n 
C41 H67 KXP sing 313 n n 
C42 H69 KXP sing 314 n n 
C42 H70 KXP sing 315 n n 
C43 H71 KXP sing 316 n n 
C43 H72 KXP sing 317 n n 
C44 H73 KXP sing 318 n n 
C44 H74 KXP sing 319 n n 
C45 H75 KXP sing 320 n n 
C45 H76 KXP sing 321 n n 
C46 H77 KXP sing 322 n n 
C46 H78 KXP sing 323 n n 
C46 H79 KXP sing 324 n n 
#
_atom_sites.entry_id                     6NR2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 KXP A 1 1301 1201 KXP LIG . 
F 3 KXS A 1 1302 1202 KXS WS1 . 
G 2 KXP B 1 1301 1201 KXP LIG . 
H 3 KXS B 1 1302 1202 KXS WS1 . 
I 2 KXP C 1 1301 1201 KXP LIG . 
J 3 KXS C 1 1302 1202 KXS WS1 . 
K 2 KXP D 1 1301 1201 KXP LIG . 
L 3 KXS D 1 1302 1202 KXS WS1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 KXP . . . I 2 150.819 164.407 162.425 1 116.76 ? C21 KXP 1301 C 1 
HETATM 2 C C22 KXP . . . I 2 150.912 162.952 161.964 1 116.76 ? C22 KXP 1301 C 1 
HETATM 3 C C18 KXP . . . I 2 150.114 165.711 164.239 1 116.76 ? C18 KXP 1301 C 1 
HETATM 4 C C23 KXP . . . I 2 150.182 162.704 160.645 1 116.76 ? C23 KXP 1301 C 1 
HETATM 5 C C29 KXP . . . I 2 151.882 160.733 156.706 1 116.76 ? C29 KXP 1301 C 1 
HETATM 6 C C30 KXP . . . I 2 150.77 161.748 156.39 1 116.76 ? C30 KXP 1301 C 1 
HETATM 7 C C31 KXP . . . I 2 150.782 162.176 154.914 1 116.76 ? C31 KXP 1301 C 1 
HETATM 8 C C32 KXP . . . I 2 150.753 160.97 153.965 1 116.76 ? C32 KXP 1301 C 1 
HETATM 9 C C33 KXP . . . I 2 151.866 159.959 154.28 1 116.76 ? C33 KXP 1301 C 1 
HETATM 10 C C34 KXP . . . I 2 151.852 159.53 155.756 1 116.76 ? C34 KXP 1301 C 1 
HETATM 11 C C49 KXP . . . I 2 152.979 162.497 162.971 1 116.76 ? C49 KXP 1301 C 1 
HETATM 12 O O20 KXP . . . I 2 150.219 164.432 163.687 1 116.76 ? O20 KXP 1301 C 1 
HETATM 13 O O24 KXP . . . I 2 150.563 161.452 160.151 1 116.76 ? O24 KXP 1301 C 1 
HETATM 14 O O26 KXP . . . I 2 152.282 162.703 158.689 1 116.76 ? O26 KXP 1301 C 1 
HETATM 15 O O27 KXP . . . I 2 153.078 160.869 160.136 1 116.76 ? O27 KXP 1301 C 1 
HETATM 16 O O28 KXP . . . I 2 151.718 160.276 158.024 1 116.76 ? O28 KXP 1301 C 1 
HETATM 17 O O35 KXP . . . I 2 152.977 158.723 156.006 1 116.76 ? O35 KXP 1301 C 1 
HETATM 18 O O36 KXP . . . I 2 151.693 158.825 153.475 1 116.76 ? O36 KXP 1301 C 1 
HETATM 19 O O38 KXP . . . I 2 153.255 156.795 153.163 1 116.76 ? O38 KXP 1301 C 1 
HETATM 20 O O39 KXP . . . I 2 154.217 159.06 152.999 1 116.76 ? O39 KXP 1301 C 1 
HETATM 21 O O40 KXP . . . I 2 152.755 158.21 151.206 1 116.76 ? O40 KXP 1301 C 1 
HETATM 22 O O41 KXP . . . I 2 150.914 161.427 152.646 1 116.76 ? O41 KXP 1301 C 1 
HETATM 23 O O43 KXP . . . I 2 148.565 162.472 152.424 1 116.76 ? O43 KXP 1301 C 1 
HETATM 24 O O44 KXP . . . I 2 148.962 160.249 151.436 1 116.76 ? O44 KXP 1301 C 1 
HETATM 25 O O45 KXP . . . I 2 149.953 162.254 150.398 1 116.76 ? O45 KXP 1301 C 1 
HETATM 26 O O46 KXP . . . I 2 149.656 162.979 154.666 1 116.76 ? O46 KXP 1301 C 1 
HETATM 27 O O47 KXP . . . I 2 149.527 161.165 156.684 1 116.76 ? O47 KXP 1301 C 1 
HETATM 28 O O48 KXP . . . I 2 152.264 162.646 161.779 1 116.76 ? O48 KXP 1301 C 1 
HETATM 29 O O50 KXP . . . I 2 152.715 163.172 163.908 1 116.76 ? O50 KXP 1301 C 1 
HETATM 30 P P25 KXP . . . I 2 151.945 161.345 159.258 1 116.76 ? P25 KXP 1301 C 1 
HETATM 31 P P37 KXP . . . I 2 153.008 158.21 152.694 1 116.76 ? P37 KXP 1301 C 1 
HETATM 32 P P42 KXP . . . I 2 149.57 161.604 151.706 1 116.76 ? P42 KXP 1301 C 1 
HETATM 33 H H211 KXP . . . I 2 150.282 164.915 161.798 1 116.76 ? H211 KXP 1301 C 1 
HETATM 34 H H212 KXP . . . I 2 151.709 164.79 162.479 1 116.76 ? H212 KXP 1301 C 1 
HETATM 35 H H221 KXP . . . I 2 150.542 162.373 162.649 1 116.76 ? H221 KXP 1301 C 1 
HETATM 36 H H231 KXP . . . I 2 149.223 162.718 160.795 1 116.76 ? H231 KXP 1301 C 1 
HETATM 37 H H232 KXP . . . I 2 150.421 163.394 160.005 1 116.76 ? H232 KXP 1301 C 1 
HETATM 38 H H291 KXP . . . I 2 152.742 161.174 156.625 1 116.76 ? H291 KXP 1301 C 1 
HETATM 39 H H301 KXP . . . I 2 150.895 162.533 156.946 1 116.76 ? H301 KXP 1301 C 1 
HETATM 40 H H311 KXP . . . I 2 151.586 162.69 154.744 1 116.76 ? H311 KXP 1301 C 1 
HETATM 41 H H321 KXP . . . I 2 149.894 160.527 154.046 1 116.76 ? H321 KXP 1301 C 1 
HETATM 42 H H331 KXP . . . I 2 152.724 160.366 154.081 1 116.76 ? H331 KXP 1301 C 1 
HETATM 43 H H341 KXP . . . I 2 151.046 159.016 155.925 1 116.76 ? H341 KXP 1301 C 1 
HETATM 44 H H351 KXP . . . I 2 153.246 158.377 155.277 1 116.76 ? H351 KXP 1301 C 1 
HETATM 45 H H461 KXP . . . I 2 149.816 163.777 154.911 1 116.76 ? H461 KXP 1301 C 1 
HETATM 46 H H471 KXP . . . I 2 149.281 161.401 157.463 1 116.76 ? H471 KXP 1301 C 1 
HETATM 47 C C17 KXP . . . I 2 154.102 161.468 163.063 1 116.76 ? C17 KXP 1301 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#