data_6NRF # _model_server_result.job_id ndhYdB4gD30Yf6v5ihcKNQ _model_server_result.datetime_utc '2025-03-27 22:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6NRF # _exptl.entry_id 6NRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRF _cell.length_a 93.39 _cell.length_b 93.39 _cell.length_c 138.213 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 104 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 7_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6NRF _atom_sites.fract_transf_matrix[1][1] 0.010708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 1101 1101 CIT CIT . C 3 DMS A 1 1102 1 DMS DMS . D 4 KYV A 1 1103 1 KYV 100 . E 5 CL A 1 1104 1 CL CL . F 5 CL A 1 1105 2 CL CL . G 6 HOH A 1 1201 18 HOH HOH . G 6 HOH A 2 1202 25 HOH HOH . G 6 HOH A 3 1203 57 HOH HOH . G 6 HOH A 4 1204 123 HOH HOH . G 6 HOH A 5 1205 145 HOH HOH . G 6 HOH A 6 1206 154 HOH HOH . G 6 HOH A 7 1207 14 HOH HOH . G 6 HOH A 8 1208 158 HOH HOH . G 6 HOH A 9 1209 125 HOH HOH . G 6 HOH A 10 1210 37 HOH HOH . G 6 HOH A 11 1211 12 HOH HOH . G 6 HOH A 12 1212 67 HOH HOH . G 6 HOH A 13 1213 126 HOH HOH . G 6 HOH A 14 1214 101 HOH HOH . G 6 HOH A 15 1215 124 HOH HOH . G 6 HOH A 16 1216 24 HOH HOH . G 6 HOH A 17 1217 53 HOH HOH . G 6 HOH A 18 1218 28 HOH HOH . G 6 HOH A 19 1219 167 HOH HOH . G 6 HOH A 20 1220 82 HOH HOH . G 6 HOH A 21 1221 55 HOH HOH . G 6 HOH A 22 1222 7 HOH HOH . G 6 HOH A 23 1223 6 HOH HOH . G 6 HOH A 24 1224 10 HOH HOH . G 6 HOH A 25 1225 142 HOH HOH . G 6 HOH A 26 1226 17 HOH HOH . G 6 HOH A 27 1227 77 HOH HOH . G 6 HOH A 28 1228 51 HOH HOH . G 6 HOH A 29 1229 81 HOH HOH . G 6 HOH A 30 1230 5 HOH HOH . G 6 HOH A 31 1231 118 HOH HOH . G 6 HOH A 32 1232 22 HOH HOH . G 6 HOH A 33 1233 23 HOH HOH . G 6 HOH A 34 1234 11 HOH HOH . G 6 HOH A 35 1235 36 HOH HOH . G 6 HOH A 36 1236 9 HOH HOH . G 6 HOH A 37 1237 120 HOH HOH . G 6 HOH A 38 1238 122 HOH HOH . G 6 HOH A 39 1239 63 HOH HOH . G 6 HOH A 40 1240 42 HOH HOH . G 6 HOH A 41 1241 131 HOH HOH . G 6 HOH A 42 1242 137 HOH HOH . G 6 HOH A 43 1243 144 HOH HOH . G 6 HOH A 44 1244 147 HOH HOH . G 6 HOH A 45 1245 15 HOH HOH . G 6 HOH A 46 1246 149 HOH HOH . G 6 HOH A 47 1247 4 HOH HOH . G 6 HOH A 48 1248 140 HOH HOH . G 6 HOH A 49 1249 35 HOH HOH . G 6 HOH A 50 1250 54 HOH HOH . G 6 HOH A 51 1251 2 HOH HOH . G 6 HOH A 52 1252 139 HOH HOH . G 6 HOH A 53 1253 45 HOH HOH . G 6 HOH A 54 1254 161 HOH HOH . G 6 HOH A 55 1255 155 HOH HOH . G 6 HOH A 56 1256 60 HOH HOH . G 6 HOH A 57 1257 44 HOH HOH . G 6 HOH A 58 1258 119 HOH HOH . G 6 HOH A 59 1259 46 HOH HOH . G 6 HOH A 60 1260 61 HOH HOH . G 6 HOH A 61 1261 62 HOH HOH . G 6 HOH A 62 1262 1 HOH HOH . G 6 HOH A 63 1263 30 HOH HOH . G 6 HOH A 64 1264 157 HOH HOH . G 6 HOH A 65 1265 163 HOH HOH . G 6 HOH A 66 1266 165 HOH HOH . G 6 HOH A 67 1267 130 HOH HOH . G 6 HOH A 68 1268 65 HOH HOH . G 6 HOH A 69 1269 27 HOH HOH . G 6 HOH A 70 1270 48 HOH HOH . G 6 HOH A 71 1271 16 HOH HOH . G 6 HOH A 72 1272 107 HOH HOH . G 6 HOH A 73 1273 78 HOH HOH . G 6 HOH A 74 1274 84 HOH HOH . G 6 HOH A 75 1275 8 HOH HOH . G 6 HOH A 76 1276 156 HOH HOH . G 6 HOH A 77 1277 64 HOH HOH . G 6 HOH A 78 1278 20 HOH HOH . G 6 HOH A 79 1279 87 HOH HOH . G 6 HOH A 80 1280 88 HOH HOH . G 6 HOH A 81 1281 85 HOH HOH . G 6 HOH A 82 1282 168 HOH HOH . G 6 HOH A 83 1283 132 HOH HOH . G 6 HOH A 84 1284 97 HOH HOH . G 6 HOH A 85 1285 26 HOH HOH . G 6 HOH A 86 1286 141 HOH HOH . G 6 HOH A 87 1287 71 HOH HOH . G 6 HOH A 88 1288 151 HOH HOH . G 6 HOH A 89 1289 127 HOH HOH . G 6 HOH A 90 1290 164 HOH HOH . G 6 HOH A 91 1291 128 HOH HOH . G 6 HOH A 92 1292 136 HOH HOH . G 6 HOH A 93 1293 19 HOH HOH . G 6 HOH A 94 1294 110 HOH HOH . G 6 HOH A 95 1295 146 HOH HOH . G 6 HOH A 96 1296 160 HOH HOH . G 6 HOH A 97 1297 129 HOH HOH . G 6 HOH A 98 1298 152 HOH HOH . G 6 HOH A 99 1299 117 HOH HOH . G 6 HOH A 100 1300 162 HOH HOH . G 6 HOH A 101 1301 159 HOH HOH . G 6 HOH A 102 1302 109 HOH HOH . G 6 HOH A 103 1303 138 HOH HOH . G 6 HOH A 104 1304 106 HOH HOH . G 6 HOH A 105 1305 153 HOH HOH . G 6 HOH A 106 1306 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 30.948 2.927 5.586 1 51.33 ? C1 CIT 1101 A 1 HETATM 2 O O1 CIT . . . B 2 31.427 3.614 4.668 1 45.37 ? O1 CIT 1101 A 1 HETATM 3 O O2 CIT . . . B 2 31.136 3.149 6.807 1 45.02 ? O2 CIT 1101 A 1 HETATM 4 C C2 CIT . . . B 2 30.02 1.793 5.191 1 54.24 ? C2 CIT 1101 A 1 HETATM 5 C C3 CIT . . . B 2 28.539 2.18 5.246 1 60.58 ? C3 CIT 1101 A 1 HETATM 6 O O7 CIT . . . B 2 28.261 2.622 6.566 1 57.12 ? O7 CIT 1101 A 1 HETATM 7 C C4 CIT . . . B 2 28.288 3.311 4.235 1 57.88 ? C4 CIT 1101 A 1 HETATM 8 C C5 CIT . . . B 2 27.135 4.247 4.553 1 60.9 ? C5 CIT 1101 A 1 HETATM 9 O O3 CIT . . . B 2 26.868 5.136 3.724 1 64.53 ? O3 CIT 1101 A 1 HETATM 10 O O4 CIT . . . B 2 26.517 4.094 5.623 1 67.92 ? O4 CIT 1101 A 1 HETATM 11 C C6 CIT . . . B 2 27.655 0.957 4.882 1 62.75 ? C6 CIT 1101 A 1 HETATM 12 O O5 CIT . . . B 2 27.798 0.472 3.743 1 62.4 ? O5 CIT 1101 A 1 HETATM 13 O O6 CIT . . . B 2 26.858 0.541 5.751 1 62.88 ? O6 CIT 1101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #