data_6NRG # _model_server_result.job_id RvFiqEXR30BsERTD9GqJ5g _model_server_result.datetime_utc '2025-01-10 07:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1107}' # _entry.id 6NRG # _exptl.entry_id 6NRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRG _cell.length_a 92.876 _cell.length_b 92.876 _cell.length_c 138.941 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 104 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 7_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.096 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6NRG _atom_sites.fract_transf_matrix[1][1] 0.010767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KYY A 1 1101 1 KYY T42 . C 3 SO4 A 1 1102 1 SO4 SO4 . D 3 SO4 A 1 1103 4 SO4 SO4 . E 3 SO4 A 1 1104 5 SO4 SO4 . F 3 SO4 A 1 1105 7 SO4 SO4 . G 3 SO4 A 1 1106 8 SO4 SO4 . H 4 DMS A 1 1107 1 DMS DMS . I 4 DMS A 1 1108 2 DMS DMS . J 4 DMS A 1 1109 3 DMS DMS . K 5 HOH A 1 1201 105 HOH HOH . K 5 HOH A 2 1202 109 HOH HOH . K 5 HOH A 3 1203 127 HOH HOH . K 5 HOH A 4 1204 123 HOH HOH . K 5 HOH A 5 1205 114 HOH HOH . K 5 HOH A 6 1206 70 HOH HOH . K 5 HOH A 7 1207 130 HOH HOH . K 5 HOH A 8 1208 102 HOH HOH . K 5 HOH A 9 1209 135 HOH HOH . K 5 HOH A 10 1210 44 HOH HOH . K 5 HOH A 11 1211 23 HOH HOH . K 5 HOH A 12 1212 101 HOH HOH . K 5 HOH A 13 1213 142 HOH HOH . K 5 HOH A 14 1214 118 HOH HOH . K 5 HOH A 15 1215 83 HOH HOH . K 5 HOH A 16 1216 126 HOH HOH . K 5 HOH A 17 1217 27 HOH HOH . K 5 HOH A 18 1218 61 HOH HOH . K 5 HOH A 19 1219 59 HOH HOH . K 5 HOH A 20 1220 20 HOH HOH . K 5 HOH A 21 1221 86 HOH HOH . K 5 HOH A 22 1222 47 HOH HOH . K 5 HOH A 23 1223 48 HOH HOH . K 5 HOH A 24 1224 46 HOH HOH . K 5 HOH A 25 1225 73 HOH HOH . K 5 HOH A 26 1226 52 HOH HOH . K 5 HOH A 27 1227 87 HOH HOH . K 5 HOH A 28 1228 42 HOH HOH . K 5 HOH A 29 1229 122 HOH HOH . K 5 HOH A 30 1230 90 HOH HOH . K 5 HOH A 31 1231 21 HOH HOH . K 5 HOH A 32 1232 10 HOH HOH . K 5 HOH A 33 1233 85 HOH HOH . K 5 HOH A 34 1234 7 HOH HOH . K 5 HOH A 35 1235 137 HOH HOH . K 5 HOH A 36 1236 93 HOH HOH . K 5 HOH A 37 1237 77 HOH HOH . K 5 HOH A 38 1238 112 HOH HOH . K 5 HOH A 39 1239 119 HOH HOH . K 5 HOH A 40 1240 32 HOH HOH . K 5 HOH A 41 1241 132 HOH HOH . K 5 HOH A 42 1242 120 HOH HOH . K 5 HOH A 43 1243 31 HOH HOH . K 5 HOH A 44 1244 129 HOH HOH . K 5 HOH A 45 1245 6 HOH HOH . K 5 HOH A 46 1246 5 HOH HOH . K 5 HOH A 47 1247 39 HOH HOH . K 5 HOH A 48 1248 12 HOH HOH . K 5 HOH A 49 1249 96 HOH HOH . K 5 HOH A 50 1250 57 HOH HOH . K 5 HOH A 51 1251 41 HOH HOH . K 5 HOH A 52 1252 50 HOH HOH . K 5 HOH A 53 1253 16 HOH HOH . K 5 HOH A 54 1254 56 HOH HOH . K 5 HOH A 55 1255 79 HOH HOH . K 5 HOH A 56 1256 30 HOH HOH . K 5 HOH A 57 1257 11 HOH HOH . K 5 HOH A 58 1258 63 HOH HOH . K 5 HOH A 59 1259 2 HOH HOH . K 5 HOH A 60 1260 17 HOH HOH . K 5 HOH A 61 1261 26 HOH HOH . K 5 HOH A 62 1262 22 HOH HOH . K 5 HOH A 63 1263 14 HOH HOH . K 5 HOH A 64 1264 33 HOH HOH . K 5 HOH A 65 1265 143 HOH HOH . K 5 HOH A 66 1266 9 HOH HOH . K 5 HOH A 67 1267 100 HOH HOH . K 5 HOH A 68 1268 36 HOH HOH . K 5 HOH A 69 1269 72 HOH HOH . K 5 HOH A 70 1270 3 HOH HOH . K 5 HOH A 71 1271 1 HOH HOH . K 5 HOH A 72 1272 125 HOH HOH . K 5 HOH A 73 1273 4 HOH HOH . K 5 HOH A 74 1274 80 HOH HOH . K 5 HOH A 75 1275 8 HOH HOH . K 5 HOH A 76 1276 121 HOH HOH . K 5 HOH A 77 1277 148 HOH HOH . K 5 HOH A 78 1278 113 HOH HOH . K 5 HOH A 79 1279 66 HOH HOH . K 5 HOH A 80 1280 15 HOH HOH . K 5 HOH A 81 1281 38 HOH HOH . K 5 HOH A 82 1282 25 HOH HOH . K 5 HOH A 83 1283 136 HOH HOH . K 5 HOH A 84 1284 111 HOH HOH . K 5 HOH A 85 1285 69 HOH HOH . K 5 HOH A 86 1286 45 HOH HOH . K 5 HOH A 87 1287 49 HOH HOH . K 5 HOH A 88 1288 35 HOH HOH . K 5 HOH A 89 1289 29 HOH HOH . K 5 HOH A 90 1290 91 HOH HOH . K 5 HOH A 91 1291 43 HOH HOH . K 5 HOH A 92 1292 34 HOH HOH . K 5 HOH A 93 1293 54 HOH HOH . K 5 HOH A 94 1294 116 HOH HOH . K 5 HOH A 95 1295 124 HOH HOH . K 5 HOH A 96 1296 55 HOH HOH . K 5 HOH A 97 1297 19 HOH HOH . K 5 HOH A 98 1298 60 HOH HOH . K 5 HOH A 99 1299 84 HOH HOH . K 5 HOH A 100 1300 133 HOH HOH . K 5 HOH A 101 1301 65 HOH HOH . K 5 HOH A 102 1302 28 HOH HOH . K 5 HOH A 103 1303 131 HOH HOH . K 5 HOH A 104 1304 24 HOH HOH . K 5 HOH A 105 1305 51 HOH HOH . K 5 HOH A 106 1306 82 HOH HOH . K 5 HOH A 107 1307 115 HOH HOH . K 5 HOH A 108 1308 146 HOH HOH . K 5 HOH A 109 1309 67 HOH HOH . K 5 HOH A 110 1310 53 HOH HOH . K 5 HOH A 111 1311 71 HOH HOH . K 5 HOH A 112 1312 76 HOH HOH . K 5 HOH A 113 1313 117 HOH HOH . K 5 HOH A 114 1314 128 HOH HOH . K 5 HOH A 115 1315 13 HOH HOH . K 5 HOH A 116 1316 18 HOH HOH . K 5 HOH A 117 1317 99 HOH HOH . K 5 HOH A 118 1318 64 HOH HOH . K 5 HOH A 119 1319 62 HOH HOH . K 5 HOH A 120 1320 81 HOH HOH . K 5 HOH A 121 1321 140 HOH HOH . K 5 HOH A 122 1322 147 HOH HOH . K 5 HOH A 123 1323 108 HOH HOH . K 5 HOH A 124 1324 144 HOH HOH . K 5 HOH A 125 1325 139 HOH HOH . K 5 HOH A 126 1326 58 HOH HOH . K 5 HOH A 127 1327 94 HOH HOH . K 5 HOH A 128 1328 95 HOH HOH . K 5 HOH A 129 1329 92 HOH HOH . K 5 HOH A 130 1330 75 HOH HOH . K 5 HOH A 131 1331 98 HOH HOH . K 5 HOH A 132 1332 141 HOH HOH . K 5 HOH A 133 1333 145 HOH HOH . K 5 HOH A 134 1334 104 HOH HOH . K 5 HOH A 135 1335 78 HOH HOH . K 5 HOH A 136 1336 107 HOH HOH . K 5 HOH A 137 1337 74 HOH HOH . K 5 HOH A 138 1338 88 HOH HOH . K 5 HOH A 139 1339 103 HOH HOH . K 5 HOH A 140 1340 37 HOH HOH . K 5 HOH A 141 1341 68 HOH HOH . K 5 HOH A 142 1342 138 HOH HOH . K 5 HOH A 143 1343 89 HOH HOH . K 5 HOH A 144 1344 106 HOH HOH . K 5 HOH A 145 1345 40 HOH HOH . K 5 HOH A 146 1346 97 HOH HOH . K 5 HOH A 147 1347 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 4 27.619 -10.204 10.946 1 44 ? S DMS 1107 A 1 HETATM 2 O O DMS . . . H 4 27.791 -9.391 12.071 1 34.25 ? O DMS 1107 A 1 HETATM 3 C C1 DMS . . . H 4 27.147 -11.681 11.794 1 48.13 ? C1 DMS 1107 A 1 HETATM 4 C C2 DMS . . . H 4 26.106 -9.576 10.257 1 42.85 ? C2 DMS 1107 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #