data_6NRJ # _model_server_result.job_id GRYAVnB7zTXfU4OUkboxBA _model_server_result.datetime_utc '2024-11-01 11:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6NRJ # _exptl.entry_id 6NRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-2-[(4-{[2-(1H-benzimidazol-2-yl)ethyl]carbamoyl}phenyl)methylidene]-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRJ _cell.length_a 94.465 _cell.length_b 94.465 _cell.length_c 137.627 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 104 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 7_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.047 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H20 N4 O4' _chem_comp.formula_weight 452.461 _chem_comp.id KYJ _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-2-[(4-{[2-(1H-benzimidazol-2-yl)ethyl]carbamoyl}phenyl)methylidene]-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 KYJ sing 182 n n C14 N1 KYJ sing 183 n n C15 C16 KYJ sing 184 n n N1 C13 KYJ sing 185 n n C23 C24 KYJ doub 186 n y C23 C12 KYJ sing 187 n y C24 C9 KYJ sing 188 n y C13 C12 KYJ sing 189 n n C13 O2 KYJ doub 190 n n C12 C11 KYJ doub 191 n y C16 N3 KYJ sing 192 n y C16 N2 KYJ doub 193 n y C9 C8 KYJ sing 194 n n C9 C10 KYJ doub 195 n y N3 C22 KYJ sing 196 n y C8 C7 KYJ doub 197 z n O1 C6 KYJ doub 198 n n N2 C17 KYJ sing 199 n y C11 C10 KYJ sing 200 n y C7 C6 KYJ sing 201 n n C7 O3 KYJ sing 202 n n C6 C5 KYJ sing 203 n n C22 C17 KYJ doub 204 n y C22 C21 KYJ sing 205 n y C17 C18 KYJ sing 206 n y O3 C25 KYJ sing 207 n n C21 C20 KYJ doub 208 n y C5 C25 KYJ doub 209 n y C5 C4 KYJ sing 210 n y C18 C19 KYJ doub 211 n y C25 C1 KYJ sing 212 n y C4 C3 KYJ doub 213 n y C20 C19 KYJ sing 214 n y C1 C2 KYJ doub 215 n y C1 C KYJ sing 216 n n C3 C2 KYJ sing 217 n y N C KYJ sing 218 n n C O KYJ doub 219 n n N H1 KYJ sing 220 n n N H2 KYJ sing 221 n n C10 H3 KYJ sing 222 n n C11 H4 KYJ sing 223 n n C2 H5 KYJ sing 224 n n C3 H6 KYJ sing 225 n n C4 H7 KYJ sing 226 n n C8 H8 KYJ sing 227 n n N1 H9 KYJ sing 228 n n C14 H10 KYJ sing 229 n n C14 H11 KYJ sing 230 n n C15 H12 KYJ sing 231 n n C15 H13 KYJ sing 232 n n N3 H14 KYJ sing 233 n n C21 H15 KYJ sing 234 n n C20 H16 KYJ sing 235 n n C19 H17 KYJ sing 236 n n C18 H18 KYJ sing 237 n n C23 H20 KYJ sing 238 n n C24 H21 KYJ sing 239 n n # _atom_sites.entry_id 6NRJ _atom_sites.fract_transf_matrix[1][1] 0.010586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KYJ A 1 1101 1 KYJ T61 . C 3 SO4 A 1 1102 1 SO4 SO4 . D 3 SO4 A 1 1103 4 SO4 SO4 . E 3 SO4 A 1 1104 5 SO4 SO4 . F 3 SO4 A 1 1105 6 SO4 SO4 . G 3 SO4 A 1 1106 7 SO4 SO4 . H 4 DMS A 1 1107 1 DMS DMS . I 4 DMS A 1 1108 2 DMS DMS . J 5 HOH A 1 1201 18 HOH HOH . J 5 HOH A 2 1202 158 HOH HOH . J 5 HOH A 3 1203 164 HOH HOH . J 5 HOH A 4 1204 56 HOH HOH . J 5 HOH A 5 1205 79 HOH HOH . J 5 HOH A 6 1206 130 HOH HOH . J 5 HOH A 7 1207 166 HOH HOH . J 5 HOH A 8 1208 124 HOH HOH . J 5 HOH A 9 1209 37 HOH HOH . J 5 HOH A 10 1210 103 HOH HOH . J 5 HOH A 11 1211 127 HOH HOH . J 5 HOH A 12 1212 98 HOH HOH . J 5 HOH A 13 1213 25 HOH HOH . J 5 HOH A 14 1214 131 HOH HOH . J 5 HOH A 15 1215 53 HOH HOH . J 5 HOH A 16 1216 22 HOH HOH . J 5 HOH A 17 1217 101 HOH HOH . J 5 HOH A 18 1218 122 HOH HOH . J 5 HOH A 19 1219 39 HOH HOH . J 5 HOH A 20 1220 77 HOH HOH . J 5 HOH A 21 1221 145 HOH HOH . J 5 HOH A 22 1222 10 HOH HOH . J 5 HOH A 23 1223 55 HOH HOH . J 5 HOH A 24 1224 160 HOH HOH . J 5 HOH A 25 1225 23 HOH HOH . J 5 HOH A 26 1226 94 HOH HOH . J 5 HOH A 27 1227 7 HOH HOH . J 5 HOH A 28 1228 135 HOH HOH . J 5 HOH A 29 1229 51 HOH HOH . J 5 HOH A 30 1230 148 HOH HOH . J 5 HOH A 31 1231 28 HOH HOH . J 5 HOH A 32 1232 6 HOH HOH . J 5 HOH A 33 1233 125 HOH HOH . J 5 HOH A 34 1234 2 HOH HOH . J 5 HOH A 35 1235 153 HOH HOH . J 5 HOH A 36 1236 76 HOH HOH . J 5 HOH A 37 1237 129 HOH HOH . J 5 HOH A 38 1238 152 HOH HOH . J 5 HOH A 39 1239 70 HOH HOH . J 5 HOH A 40 1240 72 HOH HOH . J 5 HOH A 41 1241 17 HOH HOH . J 5 HOH A 42 1242 74 HOH HOH . J 5 HOH A 43 1243 29 HOH HOH . J 5 HOH A 44 1244 5 HOH HOH . J 5 HOH A 45 1245 151 HOH HOH . J 5 HOH A 46 1246 134 HOH HOH . J 5 HOH A 47 1247 15 HOH HOH . J 5 HOH A 48 1248 12 HOH HOH . J 5 HOH A 49 1249 60 HOH HOH . J 5 HOH A 50 1250 36 HOH HOH . J 5 HOH A 51 1251 42 HOH HOH . J 5 HOH A 52 1252 43 HOH HOH . J 5 HOH A 53 1253 30 HOH HOH . J 5 HOH A 54 1254 11 HOH HOH . J 5 HOH A 55 1255 67 HOH HOH . J 5 HOH A 56 1256 133 HOH HOH . J 5 HOH A 57 1257 61 HOH HOH . J 5 HOH A 58 1258 163 HOH HOH . J 5 HOH A 59 1259 58 HOH HOH . J 5 HOH A 60 1260 89 HOH HOH . J 5 HOH A 61 1261 102 HOH HOH . J 5 HOH A 62 1262 78 HOH HOH . J 5 HOH A 63 1263 3 HOH HOH . J 5 HOH A 64 1264 123 HOH HOH . J 5 HOH A 65 1265 48 HOH HOH . J 5 HOH A 66 1266 1 HOH HOH . J 5 HOH A 67 1267 81 HOH HOH . J 5 HOH A 68 1268 65 HOH HOH . J 5 HOH A 69 1269 35 HOH HOH . J 5 HOH A 70 1270 50 HOH HOH . J 5 HOH A 71 1271 24 HOH HOH . J 5 HOH A 72 1272 40 HOH HOH . J 5 HOH A 73 1273 4 HOH HOH . J 5 HOH A 74 1274 115 HOH HOH . J 5 HOH A 75 1275 9 HOH HOH . J 5 HOH A 76 1276 137 HOH HOH . J 5 HOH A 77 1277 54 HOH HOH . J 5 HOH A 78 1278 45 HOH HOH . J 5 HOH A 79 1279 64 HOH HOH . J 5 HOH A 80 1280 80 HOH HOH . J 5 HOH A 81 1281 16 HOH HOH . J 5 HOH A 82 1282 85 HOH HOH . J 5 HOH A 83 1283 95 HOH HOH . J 5 HOH A 84 1284 63 HOH HOH . J 5 HOH A 85 1285 20 HOH HOH . J 5 HOH A 86 1286 149 HOH HOH . J 5 HOH A 87 1287 147 HOH HOH . J 5 HOH A 88 1288 27 HOH HOH . J 5 HOH A 89 1289 138 HOH HOH . J 5 HOH A 90 1290 69 HOH HOH . J 5 HOH A 91 1291 154 HOH HOH . J 5 HOH A 92 1292 8 HOH HOH . J 5 HOH A 93 1293 93 HOH HOH . J 5 HOH A 94 1294 52 HOH HOH . J 5 HOH A 95 1295 88 HOH HOH . J 5 HOH A 96 1296 34 HOH HOH . J 5 HOH A 97 1297 62 HOH HOH . J 5 HOH A 98 1298 83 HOH HOH . J 5 HOH A 99 1299 82 HOH HOH . J 5 HOH A 100 1300 41 HOH HOH . J 5 HOH A 101 1301 68 HOH HOH . J 5 HOH A 102 1302 32 HOH HOH . J 5 HOH A 103 1303 165 HOH HOH . J 5 HOH A 104 1304 132 HOH HOH . J 5 HOH A 105 1305 159 HOH HOH . J 5 HOH A 106 1306 26 HOH HOH . J 5 HOH A 107 1307 84 HOH HOH . J 5 HOH A 108 1308 150 HOH HOH . J 5 HOH A 109 1309 19 HOH HOH . J 5 HOH A 110 1310 13 HOH HOH . J 5 HOH A 111 1311 156 HOH HOH . J 5 HOH A 112 1312 144 HOH HOH . J 5 HOH A 113 1313 71 HOH HOH . J 5 HOH A 114 1314 128 HOH HOH . J 5 HOH A 115 1315 140 HOH HOH . J 5 HOH A 116 1316 155 HOH HOH . J 5 HOH A 117 1317 161 HOH HOH . J 5 HOH A 118 1318 136 HOH HOH . J 5 HOH A 119 1319 109 HOH HOH . J 5 HOH A 120 1320 116 HOH HOH . J 5 HOH A 121 1321 142 HOH HOH . J 5 HOH A 122 1322 143 HOH HOH . J 5 HOH A 123 1323 162 HOH HOH . J 5 HOH A 124 1324 107 HOH HOH . J 5 HOH A 125 1325 49 HOH HOH . J 5 HOH A 126 1326 141 HOH HOH . J 5 HOH A 127 1327 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KYJ . . . B 2 25.857 -5.735 11.17 1 24.61 ? N KYJ 1101 A 1 HETATM 2 C C KYJ . . . B 2 26.467 -4.649 11.643 1 23.02 ? C KYJ 1101 A 1 HETATM 3 O O KYJ . . . B 2 26.022 -4.027 12.647 1 22.69 ? O KYJ 1101 A 1 HETATM 4 C C1 KYJ . . . B 2 27.715 -4.177 10.947 1 24.33 ? C1 KYJ 1101 A 1 HETATM 5 C C10 KYJ . . . B 2 26.137 -8.033 7.445 1 40.06 ? C10 KYJ 1101 A 1 HETATM 6 C C11 KYJ . . . B 2 25.302 -9.096 7.15 1 34.66 ? C11 KYJ 1101 A 1 HETATM 7 C C12 KYJ . . . B 2 25.542 -9.904 6.041 1 35.1 ? C12 KYJ 1101 A 1 HETATM 8 C C13 KYJ . . . B 2 24.695 -11.117 5.806 1 39.02 ? C13 KYJ 1101 A 1 HETATM 9 C C2 KYJ . . . B 2 28.482 -3.195 11.582 1 27.74 ? C2 KYJ 1101 A 1 HETATM 10 C C3 KYJ . . . B 2 29.623 -2.674 10.989 1 28.83 ? C3 KYJ 1101 A 1 HETATM 11 C C4 KYJ . . . B 2 30.024 -3.1 9.735 1 29.37 ? C4 KYJ 1101 A 1 HETATM 12 C C5 KYJ . . . B 2 29.278 -4.079 9.086 1 25.26 ? C5 KYJ 1101 A 1 HETATM 13 C C6 KYJ . . . B 2 29.487 -4.799 7.822 1 30.85 ? C6 KYJ 1101 A 1 HETATM 14 C C7 KYJ . . . B 2 28.43 -5.808 7.805 1 34.58 ? C7 KYJ 1101 A 1 HETATM 15 C C8 KYJ . . . B 2 28.268 -6.741 6.867 1 42.83 ? C8 KYJ 1101 A 1 HETATM 16 C C9 KYJ . . . B 2 27.246 -7.751 6.652 1 39.26 ? C9 KYJ 1101 A 1 HETATM 17 N N1 KYJ . . . B 2 25.172 -12.04 4.965 1 34.29 ? N1 KYJ 1101 A 1 HETATM 18 O O1 KYJ . . . B 2 30.309 -4.572 6.91 1 30.43 ? O1 KYJ 1101 A 1 HETATM 19 O O2 KYJ . . . B 2 23.627 -11.256 6.394 1 38.91 ? O2 KYJ 1101 A 1 HETATM 20 C C14 KYJ . . . B 2 24.425 -13.244 4.614 1 38.22 ? C14 KYJ 1101 A 1 HETATM 21 C C15 KYJ . . . B 2 25.275 -14.493 4.747 1 36.76 ? C15 KYJ 1101 A 1 HETATM 22 C C16 KYJ . . . B 2 25.482 -14.887 6.168 1 39.46 ? C16 KYJ 1101 A 1 HETATM 23 N N3 KYJ . . . B 2 25.016 -16.055 6.672 1 35.61 ? N3 KYJ 1101 A 1 HETATM 24 C C22 KYJ . . . B 2 25.388 -16.102 8.002 1 37.58 ? C22 KYJ 1101 A 1 HETATM 25 C C21 KYJ . . . B 2 25.214 -17.056 8.996 1 37.83 ? C21 KYJ 1101 A 1 HETATM 26 C C20 KYJ . . . B 2 25.773 -16.812 10.244 1 39.26 ? C20 KYJ 1101 A 1 HETATM 27 C C19 KYJ . . . B 2 26.467 -15.633 10.494 1 38.85 ? C19 KYJ 1101 A 1 HETATM 28 C C18 KYJ . . . B 2 26.635 -14.681 9.495 1 39.37 ? C18 KYJ 1101 A 1 HETATM 29 C C17 KYJ . . . B 2 26.091 -14.922 8.235 1 34.57 ? C17 KYJ 1101 A 1 HETATM 30 N N2 KYJ . . . B 2 26.136 -14.168 7.061 1 36.2 ? N2 KYJ 1101 A 1 HETATM 31 C C23 KYJ . . . B 2 26.624 -9.599 5.219 1 38.31 ? C23 KYJ 1101 A 1 HETATM 32 C C24 KYJ . . . B 2 27.467 -8.55 5.527 1 37.49 ? C24 KYJ 1101 A 1 HETATM 33 O O3 KYJ . . . B 2 27.643 -5.675 8.94 1 30.02 ? O3 KYJ 1101 A 1 HETATM 34 C C25 KYJ . . . B 2 28.154 -4.634 9.698 1 25.07 ? C25 KYJ 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #