data_6NRJ # _model_server_result.job_id DY0uCzIwrG2jfiq3c82aIA _model_server_result.datetime_utc '2024-11-01 11:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1108}' # _entry.id 6NRJ # _exptl.entry_id 6NRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRJ _cell.length_a 94.465 _cell.length_b 94.465 _cell.length_c 137.627 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 104 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 7_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.047 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6NRJ _atom_sites.fract_transf_matrix[1][1] 0.010586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KYJ A 1 1101 1 KYJ T61 . C 3 SO4 A 1 1102 1 SO4 SO4 . D 3 SO4 A 1 1103 4 SO4 SO4 . E 3 SO4 A 1 1104 5 SO4 SO4 . F 3 SO4 A 1 1105 6 SO4 SO4 . G 3 SO4 A 1 1106 7 SO4 SO4 . H 4 DMS A 1 1107 1 DMS DMS . I 4 DMS A 1 1108 2 DMS DMS . J 5 HOH A 1 1201 18 HOH HOH . J 5 HOH A 2 1202 158 HOH HOH . J 5 HOH A 3 1203 164 HOH HOH . J 5 HOH A 4 1204 56 HOH HOH . J 5 HOH A 5 1205 79 HOH HOH . J 5 HOH A 6 1206 130 HOH HOH . J 5 HOH A 7 1207 166 HOH HOH . J 5 HOH A 8 1208 124 HOH HOH . J 5 HOH A 9 1209 37 HOH HOH . J 5 HOH A 10 1210 103 HOH HOH . J 5 HOH A 11 1211 127 HOH HOH . J 5 HOH A 12 1212 98 HOH HOH . J 5 HOH A 13 1213 25 HOH HOH . J 5 HOH A 14 1214 131 HOH HOH . J 5 HOH A 15 1215 53 HOH HOH . J 5 HOH A 16 1216 22 HOH HOH . J 5 HOH A 17 1217 101 HOH HOH . J 5 HOH A 18 1218 122 HOH HOH . J 5 HOH A 19 1219 39 HOH HOH . J 5 HOH A 20 1220 77 HOH HOH . J 5 HOH A 21 1221 145 HOH HOH . J 5 HOH A 22 1222 10 HOH HOH . J 5 HOH A 23 1223 55 HOH HOH . J 5 HOH A 24 1224 160 HOH HOH . J 5 HOH A 25 1225 23 HOH HOH . J 5 HOH A 26 1226 94 HOH HOH . J 5 HOH A 27 1227 7 HOH HOH . J 5 HOH A 28 1228 135 HOH HOH . J 5 HOH A 29 1229 51 HOH HOH . J 5 HOH A 30 1230 148 HOH HOH . J 5 HOH A 31 1231 28 HOH HOH . J 5 HOH A 32 1232 6 HOH HOH . J 5 HOH A 33 1233 125 HOH HOH . J 5 HOH A 34 1234 2 HOH HOH . J 5 HOH A 35 1235 153 HOH HOH . J 5 HOH A 36 1236 76 HOH HOH . J 5 HOH A 37 1237 129 HOH HOH . J 5 HOH A 38 1238 152 HOH HOH . J 5 HOH A 39 1239 70 HOH HOH . J 5 HOH A 40 1240 72 HOH HOH . J 5 HOH A 41 1241 17 HOH HOH . J 5 HOH A 42 1242 74 HOH HOH . J 5 HOH A 43 1243 29 HOH HOH . J 5 HOH A 44 1244 5 HOH HOH . J 5 HOH A 45 1245 151 HOH HOH . J 5 HOH A 46 1246 134 HOH HOH . J 5 HOH A 47 1247 15 HOH HOH . J 5 HOH A 48 1248 12 HOH HOH . J 5 HOH A 49 1249 60 HOH HOH . J 5 HOH A 50 1250 36 HOH HOH . J 5 HOH A 51 1251 42 HOH HOH . J 5 HOH A 52 1252 43 HOH HOH . J 5 HOH A 53 1253 30 HOH HOH . J 5 HOH A 54 1254 11 HOH HOH . J 5 HOH A 55 1255 67 HOH HOH . J 5 HOH A 56 1256 133 HOH HOH . J 5 HOH A 57 1257 61 HOH HOH . J 5 HOH A 58 1258 163 HOH HOH . J 5 HOH A 59 1259 58 HOH HOH . J 5 HOH A 60 1260 89 HOH HOH . J 5 HOH A 61 1261 102 HOH HOH . J 5 HOH A 62 1262 78 HOH HOH . J 5 HOH A 63 1263 3 HOH HOH . J 5 HOH A 64 1264 123 HOH HOH . J 5 HOH A 65 1265 48 HOH HOH . J 5 HOH A 66 1266 1 HOH HOH . J 5 HOH A 67 1267 81 HOH HOH . J 5 HOH A 68 1268 65 HOH HOH . J 5 HOH A 69 1269 35 HOH HOH . J 5 HOH A 70 1270 50 HOH HOH . J 5 HOH A 71 1271 24 HOH HOH . J 5 HOH A 72 1272 40 HOH HOH . J 5 HOH A 73 1273 4 HOH HOH . J 5 HOH A 74 1274 115 HOH HOH . J 5 HOH A 75 1275 9 HOH HOH . J 5 HOH A 76 1276 137 HOH HOH . J 5 HOH A 77 1277 54 HOH HOH . J 5 HOH A 78 1278 45 HOH HOH . J 5 HOH A 79 1279 64 HOH HOH . J 5 HOH A 80 1280 80 HOH HOH . J 5 HOH A 81 1281 16 HOH HOH . J 5 HOH A 82 1282 85 HOH HOH . J 5 HOH A 83 1283 95 HOH HOH . J 5 HOH A 84 1284 63 HOH HOH . J 5 HOH A 85 1285 20 HOH HOH . J 5 HOH A 86 1286 149 HOH HOH . J 5 HOH A 87 1287 147 HOH HOH . J 5 HOH A 88 1288 27 HOH HOH . J 5 HOH A 89 1289 138 HOH HOH . J 5 HOH A 90 1290 69 HOH HOH . J 5 HOH A 91 1291 154 HOH HOH . J 5 HOH A 92 1292 8 HOH HOH . J 5 HOH A 93 1293 93 HOH HOH . J 5 HOH A 94 1294 52 HOH HOH . J 5 HOH A 95 1295 88 HOH HOH . J 5 HOH A 96 1296 34 HOH HOH . J 5 HOH A 97 1297 62 HOH HOH . J 5 HOH A 98 1298 83 HOH HOH . J 5 HOH A 99 1299 82 HOH HOH . J 5 HOH A 100 1300 41 HOH HOH . J 5 HOH A 101 1301 68 HOH HOH . J 5 HOH A 102 1302 32 HOH HOH . J 5 HOH A 103 1303 165 HOH HOH . J 5 HOH A 104 1304 132 HOH HOH . J 5 HOH A 105 1305 159 HOH HOH . J 5 HOH A 106 1306 26 HOH HOH . J 5 HOH A 107 1307 84 HOH HOH . J 5 HOH A 108 1308 150 HOH HOH . J 5 HOH A 109 1309 19 HOH HOH . J 5 HOH A 110 1310 13 HOH HOH . J 5 HOH A 111 1311 156 HOH HOH . J 5 HOH A 112 1312 144 HOH HOH . J 5 HOH A 113 1313 71 HOH HOH . J 5 HOH A 114 1314 128 HOH HOH . J 5 HOH A 115 1315 140 HOH HOH . J 5 HOH A 116 1316 155 HOH HOH . J 5 HOH A 117 1317 161 HOH HOH . J 5 HOH A 118 1318 136 HOH HOH . J 5 HOH A 119 1319 109 HOH HOH . J 5 HOH A 120 1320 116 HOH HOH . J 5 HOH A 121 1321 142 HOH HOH . J 5 HOH A 122 1322 143 HOH HOH . J 5 HOH A 123 1323 162 HOH HOH . J 5 HOH A 124 1324 107 HOH HOH . J 5 HOH A 125 1325 49 HOH HOH . J 5 HOH A 126 1326 141 HOH HOH . J 5 HOH A 127 1327 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 4 22.678 -13.481 11.115 1 86.91 ? S DMS 1108 A 1 HETATM 2 O O DMS . . . I 4 22.848 -13.624 9.649 1 77.55 ? O DMS 1108 A 1 HETATM 3 C C1 DMS . . . I 4 22.633 -15.143 11.734 1 75.09 ? C1 DMS 1108 A 1 HETATM 4 C C2 DMS . . . I 4 24.293 -13.027 11.645 1 84.2 ? C2 DMS 1108 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #