data_6NRR # _model_server_result.job_id XVzCp_6KRw4yhIiGOTZp8w _model_server_result.datetime_utc '2024-10-19 16:46:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6NRR # _exptl.entry_id 6NRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRR _cell.length_a 85.364 _cell.length_b 85.364 _cell.length_c 103.584 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 901 NAG 3 n C NAG 2 C 2 NAG B 902 NAG 3 n C BMA 3 C 3 BMA B 903 BMA 3 n C FUC 4 C 4 FUC B 904 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 139 1_555 A SG CYS 89 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 28 B CYS 60 1_555 B SG CYS 89 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 86 B CYS 118 1_555 B SG CYS 102 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 132 B CYS 164 1_555 B SG CYS 188 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 15 B ASN 47 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale3 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 6NRR _atom_sites.fract_transf_matrix[1][1] 0.011715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 301 2 SO4 SO4 . E 4 SO4 A 1 302 3 SO4 SO4 . F 4 SO4 A 1 303 4 SO4 SO4 . G 5 GOL A 1 304 1 GOL GOL . H 4 SO4 B 1 905 1 SO4 SO4 . I 5 GOL B 1 906 2 GOL GOL . J 6 HOH A 1 401 40 HOH HOH . J 6 HOH A 2 402 53 HOH HOH . J 6 HOH A 3 403 29 HOH HOH . J 6 HOH A 4 404 8 HOH HOH . J 6 HOH A 5 405 24 HOH HOH . J 6 HOH A 6 406 1 HOH HOH . J 6 HOH A 7 407 25 HOH HOH . J 6 HOH A 8 408 49 HOH HOH . J 6 HOH A 9 409 34 HOH HOH . J 6 HOH A 10 410 2 HOH HOH . J 6 HOH A 11 411 23 HOH HOH . J 6 HOH A 12 412 64 HOH HOH . J 6 HOH A 13 413 27 HOH HOH . J 6 HOH A 14 414 9 HOH HOH . J 6 HOH A 15 415 55 HOH HOH . J 6 HOH A 16 416 30 HOH HOH . J 6 HOH A 17 417 16 HOH HOH . J 6 HOH A 18 418 3 HOH HOH . J 6 HOH A 19 419 20 HOH HOH . J 6 HOH A 20 420 5 HOH HOH . J 6 HOH A 21 421 54 HOH HOH . J 6 HOH A 22 422 41 HOH HOH . K 6 HOH B 1 1001 59 HOH HOH . K 6 HOH B 2 1002 68 HOH HOH . K 6 HOH B 3 1003 57 HOH HOH . K 6 HOH B 4 1004 44 HOH HOH . K 6 HOH B 5 1005 42 HOH HOH . K 6 HOH B 6 1006 61 HOH HOH . K 6 HOH B 7 1007 22 HOH HOH . K 6 HOH B 8 1008 48 HOH HOH . K 6 HOH B 9 1009 4 HOH HOH . K 6 HOH B 10 1010 63 HOH HOH . K 6 HOH B 11 1011 66 HOH HOH . K 6 HOH B 12 1012 14 HOH HOH . K 6 HOH B 13 1013 18 HOH HOH . K 6 HOH B 14 1014 17 HOH HOH . K 6 HOH B 15 1015 6 HOH HOH . K 6 HOH B 16 1016 51 HOH HOH . K 6 HOH B 17 1017 69 HOH HOH . K 6 HOH B 18 1018 31 HOH HOH . K 6 HOH B 19 1019 56 HOH HOH . K 6 HOH B 20 1020 47 HOH HOH . K 6 HOH B 21 1021 52 HOH HOH . K 6 HOH B 22 1022 46 HOH HOH . K 6 HOH B 23 1023 12 HOH HOH . K 6 HOH B 24 1024 38 HOH HOH . K 6 HOH B 25 1025 36 HOH HOH . K 6 HOH B 26 1026 11 HOH HOH . K 6 HOH B 27 1027 65 HOH HOH . K 6 HOH B 28 1028 62 HOH HOH . K 6 HOH B 29 1029 10 HOH HOH . K 6 HOH B 30 1030 15 HOH HOH . K 6 HOH B 31 1031 21 HOH HOH . K 6 HOH B 32 1032 26 HOH HOH . K 6 HOH B 33 1033 32 HOH HOH . K 6 HOH B 34 1034 37 HOH HOH . K 6 HOH B 35 1035 7 HOH HOH . K 6 HOH B 36 1036 13 HOH HOH . K 6 HOH B 37 1037 35 HOH HOH . K 6 HOH B 38 1038 28 HOH HOH . K 6 HOH B 39 1039 33 HOH HOH . K 6 HOH B 40 1040 19 HOH HOH . K 6 HOH B 41 1041 50 HOH HOH . K 6 HOH B 42 1042 39 HOH HOH . K 6 HOH B 43 1043 43 HOH HOH . K 6 HOH B 44 1044 58 HOH HOH . K 6 HOH B 45 1045 67 HOH HOH . K 6 HOH B 46 1046 45 HOH HOH . K 6 HOH B 47 1047 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 2.208 37.765 -30.704 1 65.56 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . G 5 2.072 36.537 -30.051 1 66.37 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . G 5 2.106 38.885 -29.644 1 48.37 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . G 5 0.773 39.238 -29.377 1 43.84 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . G 5 2.948 40.031 -30.246 1 27.62 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . G 5 2.577 41.17 -29.586 1 31.04 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #