data_6NRW # _model_server_result.job_id TELKINKc76CdfsKReszXjw _model_server_result.datetime_utc '2025-03-05 20:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":905}' # _entry.id 6NRW # _exptl.entry_id 6NRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NRW _cell.length_a 74.084 _cell.length_b 74.084 _cell.length_c 235.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,M,N 1 1 C,D,G,H,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 5 2 1 FUC NAG C1 O1 . O3 HO3 . sing 7 ? 5 3 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 5 4 1 FUC NAG C1 O1 . O6 HO6 . sing 9 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 901 NAG 3 n E NAG 2 E 2 NAG A 902 NAG 3 n E FUC 3 E 3 FUC A 907 FUC 4 n F NAG 1 F 1 NAG B 901 NAG 4 n F NAG 2 F 2 NAG B 902 NAG 4 n F BMA 3 F 3 BMA B 903 BMA 4 n F FUC 4 F 4 FUC B 907 FUC 5 n G NAG 1 G 1 NAG C 901 NAG 5 n G FUC 2 G 2 FUC C 905 FUC 5 n G NAG 3 G 3 NAG C 902 NAG 5 n G FUC 4 G 4 FUC C 907 FUC 6 n H NAG 1 H 1 NAG D 901 NAG 6 n H NAG 2 H 2 NAG D 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 75 1_555 A SG CYS 90 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 27 B CYS 64 1_555 B SG CYS 88 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 28 C CYS 75 1_555 C SG CYS 90 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 27 D CYS 64 1_555 D SG CYS 88 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 15 A ASN 62 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 14 B ASN 51 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 C ND2 ASN 15 C ASN 62 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 C ND2 ASN 72 C ASN 119 1_555 K C1 NAG . C NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 D ND2 ASN 14 D ASN 51 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale11 G O3 NAG . G NAG 1 1_555 G C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale12 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale13 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 284 n n C1 O1 NAG sing 285 n n C1 O5 NAG sing 286 n n C1 H1 NAG sing 287 n n C2 C3 NAG sing 288 n n C2 N2 NAG sing 289 n n C2 H2 NAG sing 290 n n C3 C4 NAG sing 291 n n C3 O3 NAG sing 292 n n C3 H3 NAG sing 293 n n C4 C5 NAG sing 294 n n C4 O4 NAG sing 295 n n C4 H4 NAG sing 296 n n C5 C6 NAG sing 297 n n C5 O5 NAG sing 298 n n C5 H5 NAG sing 299 n n C6 O6 NAG sing 300 n n C6 H61 NAG sing 301 n n C6 H62 NAG sing 302 n n C7 C8 NAG sing 303 n n C7 N2 NAG sing 304 n n C7 O7 NAG doub 305 n n C8 H81 NAG sing 306 n n C8 H82 NAG sing 307 n n C8 H83 NAG sing 308 n n N2 HN2 NAG sing 309 n n O1 HO1 NAG sing 310 n n O3 HO3 NAG sing 311 n n O4 HO4 NAG sing 312 n n O6 HO6 NAG sing 313 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6NRW _atom_sites.fract_transf_matrix[1][1] 0.013498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 SO4 B 1 905 1 SO4 SO4 . J 7 SO4 B 1 906 3 SO4 SO4 . K 8 NAG C 1 905 951 NAG NAG . L 7 SO4 D 1 903 2 SO4 SO4 . M 9 HOH A 1 1001 8 HOH HOH . M 9 HOH A 2 1002 36 HOH HOH . M 9 HOH A 3 1003 64 HOH HOH . M 9 HOH A 4 1004 58 HOH HOH . M 9 HOH A 5 1005 76 HOH HOH . M 9 HOH A 6 1006 5 HOH HOH . M 9 HOH A 7 1007 33 HOH HOH . M 9 HOH A 8 1008 1 HOH HOH . M 9 HOH A 9 1009 9 HOH HOH . M 9 HOH A 10 1010 4 HOH HOH . M 9 HOH A 11 1011 24 HOH HOH . M 9 HOH A 12 1012 30 HOH HOH . M 9 HOH A 13 1013 40 HOH HOH . M 9 HOH A 14 1014 26 HOH HOH . M 9 HOH A 15 1015 12 HOH HOH . M 9 HOH A 16 1016 31 HOH HOH . M 9 HOH A 17 1017 47 HOH HOH . M 9 HOH A 18 1018 82 HOH HOH . M 9 HOH A 19 1019 49 HOH HOH . M 9 HOH A 20 1020 52 HOH HOH . N 9 HOH B 1 1001 45 HOH HOH . N 9 HOH B 2 1002 19 HOH HOH . N 9 HOH B 3 1003 75 HOH HOH . N 9 HOH B 4 1004 14 HOH HOH . N 9 HOH B 5 1005 56 HOH HOH . N 9 HOH B 6 1006 35 HOH HOH . N 9 HOH B 7 1007 42 HOH HOH . N 9 HOH B 8 1008 44 HOH HOH . N 9 HOH B 9 1009 17 HOH HOH . N 9 HOH B 10 1010 22 HOH HOH . N 9 HOH B 11 1011 43 HOH HOH . N 9 HOH B 12 1012 83 HOH HOH . N 9 HOH B 13 1013 38 HOH HOH . N 9 HOH B 14 1014 65 HOH HOH . N 9 HOH B 15 1015 63 HOH HOH . N 9 HOH B 16 1016 66 HOH HOH . N 9 HOH B 17 1017 60 HOH HOH . N 9 HOH B 18 1018 32 HOH HOH . N 9 HOH B 19 1019 73 HOH HOH . N 9 HOH B 20 1020 67 HOH HOH . O 9 HOH C 1 1001 28 HOH HOH . O 9 HOH C 2 1002 34 HOH HOH . O 9 HOH C 3 1003 11 HOH HOH . O 9 HOH C 4 1004 80 HOH HOH . O 9 HOH C 5 1005 27 HOH HOH . O 9 HOH C 6 1006 70 HOH HOH . O 9 HOH C 7 1007 25 HOH HOH . O 9 HOH C 8 1008 6 HOH HOH . O 9 HOH C 9 1009 37 HOH HOH . O 9 HOH C 10 1010 46 HOH HOH . O 9 HOH C 11 1011 41 HOH HOH . O 9 HOH C 12 1012 7 HOH HOH . O 9 HOH C 13 1013 59 HOH HOH . O 9 HOH C 14 1014 69 HOH HOH . O 9 HOH C 15 1015 71 HOH HOH . O 9 HOH C 16 1016 29 HOH HOH . O 9 HOH C 17 1017 51 HOH HOH . O 9 HOH C 18 1018 53 HOH HOH . O 9 HOH C 19 1019 61 HOH HOH . O 9 HOH C 20 1020 62 HOH HOH . O 9 HOH C 21 1021 79 HOH HOH . O 9 HOH C 22 1022 72 HOH HOH . O 9 HOH C 23 1023 81 HOH HOH . O 9 HOH C 24 1024 50 HOH HOH . O 9 HOH C 25 1025 48 HOH HOH . P 9 HOH D 1 1001 78 HOH HOH . P 9 HOH D 2 1002 3 HOH HOH . P 9 HOH D 3 1003 68 HOH HOH . P 9 HOH D 4 1004 54 HOH HOH . P 9 HOH D 5 1005 2 HOH HOH . P 9 HOH D 6 1006 13 HOH HOH . P 9 HOH D 7 1007 23 HOH HOH . P 9 HOH D 8 1008 20 HOH HOH . P 9 HOH D 9 1009 55 HOH HOH . P 9 HOH D 10 1010 18 HOH HOH . P 9 HOH D 11 1011 15 HOH HOH . P 9 HOH D 12 1012 10 HOH HOH . P 9 HOH D 13 1013 57 HOH HOH . P 9 HOH D 14 1014 39 HOH HOH . P 9 HOH D 15 1015 16 HOH HOH . P 9 HOH D 16 1016 21 HOH HOH . P 9 HOH D 17 1017 74 HOH HOH . P 9 HOH D 18 1018 77 HOH HOH . P 9 HOH D 19 1019 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 8 -26.783 -37.509 -51.694 1 69.04 ? C1 NAG 905 C 1 HETATM 2 C C2 NAG . . . K 8 -28.166 -38.043 -52.096 1 78.14 ? C2 NAG 905 C 1 HETATM 3 C C3 NAG . . . K 8 -28.986 -38.373 -50.844 1 85.15 ? C3 NAG 905 C 1 HETATM 4 C C4 NAG . . . K 8 -28.213 -39.309 -49.922 1 85.75 ? C4 NAG 905 C 1 HETATM 5 C C5 NAG . . . K 8 -26.851 -38.704 -49.597 1 78.79 ? C5 NAG 905 C 1 HETATM 6 C C6 NAG . . . K 8 -25.991 -39.594 -48.727 1 71.3 ? C6 NAG 905 C 1 HETATM 7 C C7 NAG . . . K 8 -28.867 -37.118 -54.261 1 73.88 ? C7 NAG 905 C 1 HETATM 8 C C8 NAG . . . K 8 -29.676 -36.059 -54.949 1 70.79 ? C8 NAG 905 C 1 HETATM 9 N N2 NAG . . . K 8 -28.878 -37.086 -52.926 1 74.41 ? N2 NAG 905 C 1 HETATM 10 O O3 NAG . . . K 8 -30.238 -38.945 -51.207 1 86.63 ? O3 NAG 905 C 1 HETATM 11 O O4 NAG . . . K 8 -28.941 -39.512 -48.715 1 89.73 ? O4 NAG 905 C 1 HETATM 12 O O5 NAG . . . K 8 -26.126 -38.468 -50.813 1 77.98 ? O5 NAG 905 C 1 HETATM 13 O O6 NAG . . . K 8 -25.988 -40.938 -49.188 1 66.35 ? O6 NAG 905 C 1 HETATM 14 O O7 NAG . . . K 8 -28.231 -37.958 -54.885 1 73.69 ? O7 NAG 905 C 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #