data_6NSJ
#
_model_server_result.job_id            XyZ_HgrftI2g0RC5K5QVXg 
_model_server_result.datetime_utc      '2024-10-11 02:25:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nsj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":201}' 
#
_entry.id    6NSJ 
#
_exptl.entry_id    6NSJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              591.777 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NSJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NSJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C31 H60 O8 P -1' 
_chem_comp.formula_weight    591.777 
_chem_comp.id                XP4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 XP4 sing 374 n n 
O2 P1 XP4 doub 375 n n 
P1 O3 XP4 sing 376 n n 
P1 O4 XP4 sing 377 n n 
O3 H1 XP4 sing 378 n n 
O4 C1 XP4 sing 379 n n 
C1 C2 XP4 sing 380 n n 
C1 H2 XP4 sing 381 n n 
C1 H3 XP4 sing 382 n n 
C2 C3 XP4 sing 383 n n 
C2 O7 XP4 sing 384 n n 
C2 H4 XP4 sing 385 n n 
C3 O5 XP4 sing 386 n n 
C3 H5 XP4 sing 387 n n 
C3 H6 XP4 sing 388 n n 
O5 C4 XP4 sing 389 n n 
C4 O6 XP4 doub 390 n n 
C4 C5 XP4 sing 391 n n 
C5 C6 XP4 sing 392 n n 
C5 H7 XP4 sing 393 n n 
C5 H8 XP4 sing 394 n n 
C6 C7 XP4 sing 395 n n 
C6 H9 XP4 sing 396 n n 
C6 H10 XP4 sing 397 n n 
C7 C8 XP4 sing 398 n n 
C7 H11 XP4 sing 399 n n 
C7 H12 XP4 sing 400 n n 
C8 C9 XP4 sing 401 n n 
C8 H13 XP4 sing 402 n n 
C8 H14 XP4 sing 403 n n 
C9 C10 XP4 sing 404 n n 
C9 H15 XP4 sing 405 n n 
C9 H16 XP4 sing 406 n n 
C10 C11 XP4 sing 407 n n 
C10 H17 XP4 sing 408 n n 
C10 H18 XP4 sing 409 n n 
C11 C12 XP4 sing 410 n n 
C11 H19 XP4 sing 411 n n 
C11 H20 XP4 sing 412 n n 
C12 C13 XP4 sing 413 n n 
C12 H21 XP4 sing 414 n n 
C12 H22 XP4 sing 415 n n 
C13 C14 XP4 sing 416 n n 
C13 H23 XP4 sing 417 n n 
C13 H24 XP4 sing 418 n n 
C14 C15 XP4 sing 419 n n 
C14 H25 XP4 sing 420 n n 
C14 H26 XP4 sing 421 n n 
C15 C16 XP4 sing 422 n n 
C15 H27 XP4 sing 423 n n 
C15 H28 XP4 sing 424 n n 
C16 C17 XP4 sing 425 n n 
C16 H29 XP4 sing 426 n n 
C16 H30 XP4 sing 427 n n 
C17 H31 XP4 sing 428 n n 
C17 H32 XP4 sing 429 n n 
C17 H33 XP4 sing 430 n n 
O7 C18 XP4 sing 431 n n 
C18 O8 XP4 doub 432 n n 
C18 C19 XP4 sing 433 n n 
C19 C20 XP4 sing 434 n n 
C19 H34 XP4 sing 435 n n 
C19 H35 XP4 sing 436 n n 
C20 C21 XP4 sing 437 n n 
C20 H36 XP4 sing 438 n n 
C20 H37 XP4 sing 439 n n 
C21 C22 XP4 sing 440 n n 
C21 H38 XP4 sing 441 n n 
C21 H39 XP4 sing 442 n n 
C22 C23 XP4 sing 443 n n 
C22 H40 XP4 sing 444 n n 
C22 H41 XP4 sing 445 n n 
C23 C24 XP4 sing 446 n n 
C23 H42 XP4 sing 447 n n 
C23 H43 XP4 sing 448 n n 
C24 C25 XP4 sing 449 n n 
C24 H44 XP4 sing 450 n n 
C24 H45 XP4 sing 451 n n 
C25 C26 XP4 sing 452 n n 
C25 H46 XP4 sing 453 n n 
C25 H47 XP4 sing 454 n n 
C26 C27 XP4 sing 455 n n 
C26 H48 XP4 sing 456 n n 
C26 H49 XP4 sing 457 n n 
C27 C28 XP4 sing 458 n n 
C27 H50 XP4 sing 459 n n 
C27 H51 XP4 sing 460 n n 
C28 C29 XP4 sing 461 n n 
C28 H52 XP4 sing 462 n n 
C28 H53 XP4 sing 463 n n 
C29 C30 XP4 sing 464 n n 
C29 H54 XP4 sing 465 n n 
C29 H55 XP4 sing 466 n n 
C30 C31 XP4 sing 467 n n 
C30 H56 XP4 sing 468 n n 
C30 H57 XP4 sing 469 n n 
C31 H58 XP4 sing 470 n n 
C31 H59 XP4 sing 471 n n 
C31 H60 XP4 sing 472 n n 
#
_atom_sites.entry_id                     6NSJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 XP4 A 1 201 252 XP4 XP4 . 
H 2 XP4 A 1 202 253 XP4 XP4 . 
I 2 XP4 A 1 203 251 XP4 XP4 . 
J 2 XP4 B 1 201 252 XP4 XP4 . 
K 2 XP4 B 1 202 253 XP4 XP4 . 
L 2 XP4 B 1 203 251 XP4 XP4 . 
M 2 XP4 C 1 201 252 XP4 XP4 . 
N 2 XP4 C 1 202 253 XP4 XP4 . 
O 2 XP4 C 1 203 251 XP4 XP4 . 
P 2 XP4 D 1 201 252 XP4 XP4 . 
Q 2 XP4 D 1 202 253 XP4 XP4 . 
R 2 XP4 D 1 203 251 XP4 XP4 . 
S 2 XP4 E 1 201 252 XP4 XP4 . 
T 2 XP4 E 1 202 253 XP4 XP4 . 
U 2 XP4 E 1 203 251 XP4 XP4 . 
V 2 XP4 F 1 201 251 XP4 XP4 . 
W 2 XP4 F 1 202 252 XP4 XP4 . 
X 2 XP4 F 1 203 253 XP4 XP4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XP4 . . . V 2 80.261 93.227 108.692 1 60.25 ? O1 XP4 201 F 1 
HETATM 2 O O2 XP4 . . . V 2 80.38 95.636 108.201 1 60.25 ? O2 XP4 201 F 1 
HETATM 3 P P1 XP4 . . . V 2 80.443 94.253 107.601 1 60.25 ? P1 XP4 201 F 1 
HETATM 4 O O3 XP4 . . . V 2 81.787 94.052 106.945 1 60.25 ? O3 XP4 201 F 1 
HETATM 5 O O4 XP4 . . . V 2 79.247 94.085 106.479 1 60.25 ? O4 XP4 201 F 1 
HETATM 6 C C1 XP4 . . . V 2 78.268 93.105 106.681 1 60.25 ? C1 XP4 201 F 1 
HETATM 7 C C2 XP4 . . . V 2 77.783 92.613 105.32 1 60.25 ? C2 XP4 201 F 1 
HETATM 8 C C3 XP4 . . . V 2 76.397 93.186 105.027 1 60.25 ? C3 XP4 201 F 1 
HETATM 9 O O5 XP4 . . . V 2 76.118 92.993 103.669 1 60.25 ? O5 XP4 201 F 1 
HETATM 10 C C4 XP4 . . . V 2 75.414 94.043 103.069 1 60.25 ? C4 XP4 201 F 1 
HETATM 11 O O6 XP4 . . . V 2 74.725 94.747 103.725 1 60.25 ? O6 XP4 201 F 1 
HETATM 12 C C5 XP4 . . . V 2 75.535 94.286 101.568 1 60.25 ? C5 XP4 201 F 1 
HETATM 13 C C6 XP4 . . . V 2 75.055 93.106 100.733 1 60.25 ? C6 XP4 201 F 1 
HETATM 14 C C7 XP4 . . . V 2 76.121 92.638 99.748 1 60.25 ? C7 XP4 201 F 1 
HETATM 15 C C8 XP4 . . . V 2 75.791 92.994 98.302 1 60.25 ? C8 XP4 201 F 1 
HETATM 16 C C9 XP4 . . . V 2 76.593 92.161 97.307 1 60.25 ? C9 XP4 201 F 1 
HETATM 17 C C10 XP4 . . . V 2 75.987 92.184 95.907 1 60.25 ? C10 XP4 201 F 1 
HETATM 18 C C11 XP4 . . . V 2 77.019 91.834 94.84 1 60.25 ? C11 XP4 201 F 1 
HETATM 19 C C12 XP4 . . . V 2 76.898 92.704 93.593 1 60.25 ? C12 XP4 201 F 1 
HETATM 20 C C13 XP4 . . . V 2 76.091 92.03 92.488 1 60.25 ? C13 XP4 201 F 1 
HETATM 21 C C14 XP4 . . . V 2 76.006 92.897 91.236 1 60.25 ? C14 XP4 201 F 1 
HETATM 22 C C15 XP4 . . . V 2 75.993 92.065 89.96 1 60.25 ? C15 XP4 201 F 1 
HETATM 23 C C16 XP4 . . . V 2 75.98 92.933 88.706 1 60.25 ? C16 XP4 201 F 1 
HETATM 24 C C17 XP4 . . . V 2 76.114 92.103 87.433 1 60.25 ? C17 XP4 201 F 1 
HETATM 25 O O7 XP4 . . . V 2 78.679 93.026 104.328 1 60.25 ? O7 XP4 201 F 1 
HETATM 26 C C18 XP4 . . . V 2 79.199 91.967 103.579 1 60.25 ? C18 XP4 201 F 1 
HETATM 27 O O8 XP4 . . . V 2 79.666 91.031 104.133 1 60.25 ? O8 XP4 201 F 1 
HETATM 28 C C19 XP4 . . . V 2 79.15 92.01 102.053 1 60.25 ? C19 XP4 201 F 1 
HETATM 29 C C20 XP4 . . . V 2 80.166 92.966 101.43 1 60.25 ? C20 XP4 201 F 1 
HETATM 30 C C21 XP4 . . . V 2 80.08 92.943 99.906 1 60.25 ? C21 XP4 201 F 1 
HETATM 31 C C22 XP4 . . . V 2 81.377 93.367 99.223 1 60.25 ? C22 XP4 201 F 1 
HETATM 32 C C23 XP4 . . . V 2 81.489 92.81 97.803 1 60.25 ? C23 XP4 201 F 1 
HETATM 33 C C24 XP4 . . . V 2 81.172 93.847 96.728 1 60.25 ? C24 XP4 201 F 1 
HETATM 34 C C25 XP4 . . . V 2 82.424 94.423 96.067 1 60.25 ? C25 XP4 201 F 1 
HETATM 35 C C26 XP4 . . . V 2 82.515 94.11 94.574 1 60.25 ? C26 XP4 201 F 1 
HETATM 36 C C27 XP4 . . . V 2 81.205 94.344 93.821 1 60.25 ? C27 XP4 201 F 1 
HETATM 37 C C28 XP4 . . . V 2 81.359 94.158 92.31 1 60.25 ? C28 XP4 201 F 1 
HETATM 38 C C29 XP4 . . . V 2 82.28 95.207 91.686 1 60.25 ? C29 XP4 201 F 1 
HETATM 39 C C30 XP4 . . . V 2 82.204 95.235 90.161 1 60.25 ? C30 XP4 201 F 1 
HETATM 40 C C31 XP4 . . . V 2 82.886 94.028 89.527 1 60.25 ? C31 XP4 201 F 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    139 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          40 
_model_server_stats.element_count           40 
#