data_6NSU # _model_server_result.job_id Y-c-SoImMEM2_a3tDfgApQ _model_server_result.datetime_utc '2024-11-30 11:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6NSU # _exptl.entry_id 6NSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIDEHYDROASPARTATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.56 _cell.angle_gamma 90 _cell.entry_id 6NSU _cell.length_a 47.258 _cell.length_b 52.298 _cell.length_c 53.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 83 A CYS 83 1_555 B FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A SG CYS 170 A CYS 170 1_555 B FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A SG CYS 256 A CYS 256 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 B FE1 SF4 . A SF4 401 1_555 C OD1 DYA . A DYA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 B FE1 SF4 . A SF4 401 1_555 C OD2 DYA . A DYA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula 'C4 H5 N O4' _chem_comp.formula_weight 131.087 _chem_comp.id DYA _chem_comp.mon_nstd_flag n _chem_comp.name DIDEHYDROASPARTATE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DYA sing 83 n n CA CB DYA doub 84 z n CA C DYA sing 85 n n CB CG DYA sing 86 n n CG OD1 DYA sing 87 n n CG OD2 DYA doub 88 n n C O DYA doub 89 n n C OXT DYA sing 90 n n N H DYA sing 91 n n N H2 DYA sing 92 n n CB HB DYA sing 93 n n OD1 HD1 DYA sing 94 n n OXT HXT DYA sing 95 n n # _atom_sites.entry_id 6NSU _atom_sites.fract_transf_matrix[1][1] 0.02116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 401 1 SF4 SF4 . C 3 DYA A 1 402 1 DYA DRG . D 4 HOH A 1 501 11 HOH HOH . D 4 HOH A 2 502 43 HOH HOH . D 4 HOH A 3 503 5 HOH HOH . D 4 HOH A 4 504 14 HOH HOH . D 4 HOH A 5 505 13 HOH HOH . D 4 HOH A 6 506 22 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . D 4 HOH A 8 508 36 HOH HOH . D 4 HOH A 9 509 50 HOH HOH . D 4 HOH A 10 510 3 HOH HOH . D 4 HOH A 11 511 35 HOH HOH . D 4 HOH A 12 512 6 HOH HOH . D 4 HOH A 13 513 19 HOH HOH . D 4 HOH A 14 514 53 HOH HOH . D 4 HOH A 15 515 21 HOH HOH . D 4 HOH A 16 516 2 HOH HOH . D 4 HOH A 17 517 61 HOH HOH . D 4 HOH A 18 518 9 HOH HOH . D 4 HOH A 19 519 49 HOH HOH . D 4 HOH A 20 520 7 HOH HOH . D 4 HOH A 21 521 18 HOH HOH . D 4 HOH A 22 522 4 HOH HOH . D 4 HOH A 23 523 40 HOH HOH . D 4 HOH A 24 524 8 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 12 HOH HOH . D 4 HOH A 27 527 37 HOH HOH . D 4 HOH A 28 528 39 HOH HOH . D 4 HOH A 29 529 24 HOH HOH . D 4 HOH A 30 530 26 HOH HOH . D 4 HOH A 31 531 29 HOH HOH . D 4 HOH A 32 532 15 HOH HOH . D 4 HOH A 33 533 25 HOH HOH . D 4 HOH A 34 534 33 HOH HOH . D 4 HOH A 35 535 17 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 31 HOH HOH . D 4 HOH A 38 538 28 HOH HOH . D 4 HOH A 39 539 27 HOH HOH . D 4 HOH A 40 540 30 HOH HOH . D 4 HOH A 41 541 38 HOH HOH . D 4 HOH A 42 542 44 HOH HOH . D 4 HOH A 43 543 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DYA . . . C 3 22.072 6.287 61.513 1 55.04 ? N DYA 402 A 1 HETATM 2 C CA DYA . . . C 3 21.049 6.723 62.347 1 54.89 ? CA DYA 402 A 1 HETATM 3 C CB DYA . . . C 3 20.363 5.922 63.186 1 52.92 ? CB DYA 402 A 1 HETATM 4 C CG DYA . . . C 3 20.722 4.451 63.228 1 51.61 ? CG DYA 402 A 1 HETATM 5 O OD1 DYA . . . C 3 20.099 3.732 63.989 1 51.54 ? OD1 DYA 402 A 1 HETATM 6 O OD2 DYA . . . C 3 21.6 3.948 62.545 1 52 ? OD2 DYA 402 A 1 HETATM 7 C C DYA . . . C 3 20.68 8.182 62.315 1 57.14 ? C DYA 402 A 1 HETATM 8 O O DYA . . . C 3 21.336 9.02 61.495 1 57.72 ? O DYA 402 A 1 HETATM 9 O OXT DYA . . . C 3 19.794 8.6 63.029 1 58.12 ? OXT DYA 402 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #