data_6NT3 # _model_server_result.job_id U0xvwkJAr_qa7LaggF-99g _model_server_result.datetime_utc '2024-11-04 22:45:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1613}' # _entry.id 6NT3 # _exptl.entry_id 6NT3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NT3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O3 HO3 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1601 NAG 2 n B NAG 2 B 2 NAG A 1603 NAG 2 n B BMA 3 B 3 BMA A 1605 BMA 2 n B BMA 4 B 4 BMA A 1602 BMA 2 n B BMA 5 B 5 BMA A 1604 BMA 3 n C NAG 1 C 1 NAG A 1614 NAG 3 n C NAG 2 C 2 NAG A 1615 NAG 3 n D NAG 1 D 1 NAG A 1619 NAG 3 n D NAG 2 D 2 NAG A 1620 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 342 A CYS 288 1_555 A SG CYS 391 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 382 A CYS 328 1_555 A SG CYS 397 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 763 A CYS 709 1_555 A SG CYS 771 A CYS 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 1065 A CYS 1011 1_555 A SG CYS 1084 A CYS 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 1422 A CYS 1368 1_555 A SG CYS 1435 A CYS 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 354 A ASN 300 1_555 H C1 NAG . A NAG 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 362 A ASN 308 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 366 A ASN 312 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 A ND2 ASN 384 A ASN 330 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 1069 A ASN 1015 1_555 G C1 NAG . A NAG 1608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 A ND2 ASN 1082 A ASN 1028 1_555 E C1 NAG . A NAG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale8 B O3 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale9 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 B O6 BMA . B BMA 3 1_555 B C1 BMA . B BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 695 n n C1 O1 NAG sing 696 n n C1 O5 NAG sing 697 n n C1 H1 NAG sing 698 n n C2 C3 NAG sing 699 n n C2 N2 NAG sing 700 n n C2 H2 NAG sing 701 n n C3 C4 NAG sing 702 n n C3 O3 NAG sing 703 n n C3 H3 NAG sing 704 n n C4 C5 NAG sing 705 n n C4 O4 NAG sing 706 n n C4 H4 NAG sing 707 n n C5 C6 NAG sing 708 n n C5 O5 NAG sing 709 n n C5 H5 NAG sing 710 n n C6 O6 NAG sing 711 n n C6 H61 NAG sing 712 n n C6 H62 NAG sing 713 n n C7 C8 NAG sing 714 n n C7 N2 NAG sing 715 n n C7 O7 NAG doub 716 n n C8 H81 NAG sing 717 n n C8 H82 NAG sing 718 n n C8 H83 NAG sing 719 n n N2 HN2 NAG sing 720 n n O1 HO1 NAG sing 721 n n O3 HO3 NAG sing 722 n n O4 HO4 NAG sing 723 n n O6 HO6 NAG sing 724 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6NT3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1606 1607 NAG NAG . F 4 NAG A 1 1607 1609 NAG NAG . G 4 NAG A 1 1608 1612 NAG NAG . H 4 NAG A 1 1613 1624 NAG NAG . I 5 Y01 A 1 1614 1 Y01 CHS . J 6 76F A 1 1615 1 76F PEE . K 6 76F A 1 1616 3 76F PEE . L 6 76F A 1 1617 4 76F PEE . M 6 76F A 1 1618 5 76F PEE . N 7 LHG A 1 1619 1 LHG LHG . O 8 AJP A 1 1620 1 AJP DIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 107.556 128.096 188.73 1 149.34 ? C1 NAG 1613 A 1 HETATM 2 C C2 NAG . . . H 4 108.152 127.77 190.112 1 149.34 ? C2 NAG 1613 A 1 HETATM 3 C C3 NAG . . . H 4 107.114 127.081 191.001 1 149.34 ? C3 NAG 1613 A 1 HETATM 4 C C4 NAG . . . H 4 105.826 127.89 191.05 1 149.34 ? C4 NAG 1613 A 1 HETATM 5 C C5 NAG . . . H 4 105.321 128.128 189.635 1 149.34 ? C5 NAG 1613 A 1 HETATM 6 C C6 NAG . . . H 4 104.077 128.983 189.591 1 149.34 ? C6 NAG 1613 A 1 HETATM 7 C C7 NAG . . . H 4 110.214 126.736 190.97 1 149.34 ? C7 NAG 1613 A 1 HETATM 8 C C8 NAG . . . H 4 111.373 125.845 190.648 1 149.34 ? C8 NAG 1613 A 1 HETATM 9 N N2 NAG . . . H 4 109.338 126.938 189.979 1 149.34 ? N2 NAG 1613 A 1 HETATM 10 O O3 NAG . . . H 4 107.634 126.933 192.317 1 149.34 ? O3 NAG 1613 A 1 HETATM 11 O O4 NAG . . . H 4 104.833 127.194 191.793 1 149.34 ? O4 NAG 1613 A 1 HETATM 12 O O5 NAG . . . H 4 106.328 128.821 188.888 1 149.34 ? O5 NAG 1613 A 1 HETATM 13 O O6 NAG . . . H 4 103.275 128.785 190.747 1 149.34 ? O6 NAG 1613 A 1 HETATM 14 O O7 NAG . . . H 4 110.075 127.248 192.075 1 149.34 ? O7 NAG 1613 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #