data_6NT3 # _model_server_result.job_id NY9m2wxhQbk_lOWk-wNvSQ _model_server_result.datetime_utc '2024-11-04 22:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1619}' # _entry.id 6NT3 # _exptl.entry_id 6NT3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NT3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O3 HO3 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1601 NAG 2 n B NAG 2 B 2 NAG A 1603 NAG 2 n B BMA 3 B 3 BMA A 1605 BMA 2 n B BMA 4 B 4 BMA A 1602 BMA 2 n B BMA 5 B 5 BMA A 1604 BMA 3 n C NAG 1 C 1 NAG A 1614 NAG 3 n C NAG 2 C 2 NAG A 1615 NAG 3 n D NAG 1 D 1 NAG A 1619 NAG 3 n D NAG 2 D 2 NAG A 1620 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 342 A CYS 288 1_555 A SG CYS 391 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 382 A CYS 328 1_555 A SG CYS 397 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 763 A CYS 709 1_555 A SG CYS 771 A CYS 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 1065 A CYS 1011 1_555 A SG CYS 1084 A CYS 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 1422 A CYS 1368 1_555 A SG CYS 1435 A CYS 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 354 A ASN 300 1_555 H C1 NAG . A NAG 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 362 A ASN 308 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 366 A ASN 312 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 A ND2 ASN 384 A ASN 330 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 1069 A ASN 1015 1_555 G C1 NAG . A NAG 1608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 A ND2 ASN 1082 A ASN 1028 1_555 E C1 NAG . A NAG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale8 B O3 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale9 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 B O6 BMA . B BMA 3 1_555 B C1 BMA . B BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 529 n n O1 HO1 LHG sing 530 n n C1 C2 LHG sing 531 n n C1 HC11 LHG sing 532 n n C1 HC12 LHG sing 533 n n C2 O2 LHG sing 534 n n C2 C3 LHG sing 535 n n C2 HC2 LHG sing 536 n n O2 H02 LHG sing 537 n n C3 O3 LHG sing 538 n n C3 HC31 LHG sing 539 n n C3 HC32 LHG sing 540 n n O3 P LHG sing 541 n n P O4 LHG sing 542 n n P O5 LHG doub 543 n n P O6 LHG sing 544 n n O4 HO4 LHG sing 545 n n O6 C4 LHG sing 546 n n C4 C5 LHG sing 547 n n C4 HC41 LHG sing 548 n n C4 HC42 LHG sing 549 n n C5 C6 LHG sing 550 n n C5 O7 LHG sing 551 n n C5 HC5 LHG sing 552 n n C6 O8 LHG sing 553 n n C6 HC61 LHG sing 554 n n C6 HC62 LHG sing 555 n n O7 C7 LHG sing 556 n n C7 O9 LHG doub 557 n n C7 C8 LHG sing 558 n n C8 C9 LHG sing 559 n n C8 HC81 LHG sing 560 n n C8 HC82 LHG sing 561 n n C9 C10 LHG sing 562 n n C9 HC91 LHG sing 563 n n C9 HC92 LHG sing 564 n n C10 C11 LHG sing 565 n n C10 H101 LHG sing 566 n n C10 H102 LHG sing 567 n n O8 C23 LHG sing 568 n n C23 O10 LHG doub 569 n n C23 C24 LHG sing 570 n n C24 C25 LHG sing 571 n n C24 H241 LHG sing 572 n n C24 H242 LHG sing 573 n n C11 C12 LHG sing 574 n n C11 H111 LHG sing 575 n n C11 H112 LHG sing 576 n n C12 C13 LHG sing 577 n n C12 H121 LHG sing 578 n n C12 H122 LHG sing 579 n n C13 C14 LHG sing 580 n n C13 H131 LHG sing 581 n n C13 H132 LHG sing 582 n n C14 C15 LHG sing 583 n n C14 H141 LHG sing 584 n n C14 H142 LHG sing 585 n n C15 C16 LHG sing 586 n n C15 H151 LHG sing 587 n n C15 H152 LHG sing 588 n n C16 C17 LHG sing 589 n n C16 H161 LHG sing 590 n n C16 H162 LHG sing 591 n n C17 C18 LHG sing 592 n n C17 H171 LHG sing 593 n n C17 H172 LHG sing 594 n n C18 C19 LHG sing 595 n n C18 H181 LHG sing 596 n n C18 H182 LHG sing 597 n n C19 C20 LHG sing 598 n n C19 H191 LHG sing 599 n n C19 H192 LHG sing 600 n n C20 C21 LHG sing 601 n n C20 H201 LHG sing 602 n n C20 H202 LHG sing 603 n n C21 C22 LHG sing 604 n n C21 H211 LHG sing 605 n n C21 H212 LHG sing 606 n n C22 H221 LHG sing 607 n n C22 H222 LHG sing 608 n n C22 H223 LHG sing 609 n n C25 C26 LHG sing 610 n n C25 H251 LHG sing 611 n n C25 H252 LHG sing 612 n n C26 C27 LHG sing 613 n n C26 H261 LHG sing 614 n n C26 H262 LHG sing 615 n n C27 C28 LHG sing 616 n n C27 H271 LHG sing 617 n n C27 H272 LHG sing 618 n n C28 C29 LHG sing 619 n n C28 H281 LHG sing 620 n n C28 H282 LHG sing 621 n n C29 C30 LHG sing 622 n n C29 H291 LHG sing 623 n n C29 H292 LHG sing 624 n n C30 C31 LHG sing 625 n n C30 H301 LHG sing 626 n n C30 H302 LHG sing 627 n n C31 C32 LHG sing 628 n n C31 H311 LHG sing 629 n n C31 H312 LHG sing 630 n n C32 C33 LHG sing 631 n n C32 H321 LHG sing 632 n n C32 H322 LHG sing 633 n n C33 C34 LHG sing 634 n n C33 H331 LHG sing 635 n n C33 H332 LHG sing 636 n n C34 C35 LHG sing 637 n n C34 H341 LHG sing 638 n n C34 H342 LHG sing 639 n n C35 C36 LHG sing 640 n n C35 H351 LHG sing 641 n n C35 H352 LHG sing 642 n n C36 C37 LHG sing 643 n n C36 H361 LHG sing 644 n n C36 H362 LHG sing 645 n n C37 C38 LHG sing 646 n n C37 H371 LHG sing 647 n n C37 H372 LHG sing 648 n n C38 H381 LHG sing 649 n n C38 H382 LHG sing 650 n n C38 H383 LHG sing 651 n n # _atom_sites.entry_id 6NT3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1606 1607 NAG NAG . F 4 NAG A 1 1607 1609 NAG NAG . G 4 NAG A 1 1608 1612 NAG NAG . H 4 NAG A 1 1613 1624 NAG NAG . I 5 Y01 A 1 1614 1 Y01 CHS . J 6 76F A 1 1615 1 76F PEE . K 6 76F A 1 1616 3 76F PEE . L 6 76F A 1 1617 4 76F PEE . M 6 76F A 1 1618 5 76F PEE . N 7 LHG A 1 1619 1 LHG LHG . O 8 AJP A 1 1620 1 AJP DIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . N 7 125.369 150.298 109.578 1 100.43 ? O1 LHG 1619 A 1 HETATM 2 C C1 LHG . . . N 7 126.268 150.721 108.59 1 100.43 ? C1 LHG 1619 A 1 HETATM 3 C C2 LHG . . . N 7 127.335 151.61 109.223 1 100.43 ? C2 LHG 1619 A 1 HETATM 4 O O2 LHG . . . N 7 128.208 150.82 109.977 1 100.43 ? O2 LHG 1619 A 1 HETATM 5 C C3 LHG . . . N 7 126.671 152.631 110.14 1 100.43 ? C3 LHG 1619 A 1 HETATM 6 O O3 LHG . . . N 7 127.108 152.417 111.449 1 100.43 ? O3 LHG 1619 A 1 HETATM 7 P P LHG . . . N 7 126.219 151.408 112.392 1 100.43 ? P LHG 1619 A 1 HETATM 8 O O4 LHG . . . N 7 124.83 151.971 112.539 1 100.43 -1 O4 LHG 1619 A 1 HETATM 9 O O5 LHG . . . N 7 126.126 150.065 111.718 1 100.43 ? O5 LHG 1619 A 1 HETATM 10 O O6 LHG . . . N 7 126.929 151.222 113.87 1 100.43 ? O6 LHG 1619 A 1 HETATM 11 C C4 LHG . . . N 7 127.37 152.347 114.578 1 100.43 ? C4 LHG 1619 A 1 HETATM 12 C C5 LHG . . . N 7 127.56 151.98 116.047 1 100.43 ? C5 LHG 1619 A 1 HETATM 13 C C6 LHG . . . N 7 127.422 153.224 116.917 1 100.43 ? C6 LHG 1619 A 1 HETATM 14 O O7 LHG . . . N 7 126.569 151.073 116.422 1 100.43 ? O7 LHG 1619 A 1 HETATM 15 C C7 LHG . . . N 7 126.993 149.743 116.486 1 100.43 ? C7 LHG 1619 A 1 HETATM 16 O O9 LHG . . . N 7 128.117 149.467 116.257 1 100.43 ? O9 LHG 1619 A 1 HETATM 17 C C8 LHG . . . N 7 126.005 148.644 116.853 1 100.43 ? C8 LHG 1619 A 1 HETATM 18 C C9 LHG . . . N 7 126.686 147.668 117.804 1 100.43 ? C9 LHG 1619 A 1 HETATM 19 C C10 LHG . . . N 7 126.303 148.006 119.239 1 100.43 ? C10 LHG 1619 A 1 HETATM 20 O O8 LHG . . . N 7 128.339 153.157 117.966 1 100.43 ? O8 LHG 1619 A 1 HETATM 21 C C23 LHG . . . N 7 127.767 153.006 119.23 1 100.43 ? C23 LHG 1619 A 1 HETATM 22 O O10 LHG . . . N 7 127.095 153.867 119.682 1 100.43 ? O10 LHG 1619 A 1 HETATM 23 C C24 LHG . . . N 7 128.009 151.72 120.017 1 100.43 ? C24 LHG 1619 A 1 HETATM 24 C C11 LHG . . . N 7 126.976 147.006 120.176 1 100.43 ? C11 LHG 1619 A 1 HETATM 25 C C12 LHG . . . N 7 126.504 147.246 121.605 1 100.43 ? C12 LHG 1619 A 1 HETATM 26 C C13 LHG . . . N 7 126.181 145.909 122.26 1 100.43 ? C13 LHG 1619 A 1 HETATM 27 C C14 LHG . . . N 7 125.1 146.132 123.312 1 100.43 ? C14 LHG 1619 A 1 HETATM 28 C C25 LHG . . . N 7 128.27 151.994 121.5 1 100.43 ? C25 LHG 1619 A 1 HETATM 29 C C26 LHG . . . N 7 128.806 150.717 122.147 1 100.43 ? C26 LHG 1619 A 1 HETATM 30 C C27 LHG . . . N 7 129.005 150.904 123.647 1 100.43 ? C27 LHG 1619 A 1 HETATM 31 C C28 LHG . . . N 7 129.883 149.774 124.182 1 100.43 ? C28 LHG 1619 A 1 HETATM 32 C C29 LHG . . . N 7 129.054 148.819 125.038 1 100.43 ? C29 LHG 1619 A 1 HETATM 33 C C30 LHG . . . N 7 129.401 149.009 126.514 1 100.43 ? C30 LHG 1619 A 1 HETATM 34 C C31 LHG . . . N 7 128.183 148.696 127.383 1 100.43 ? C31 LHG 1619 A 1 HETATM 35 C C32 LHG . . . N 7 128.535 148.84 128.864 1 100.43 ? C32 LHG 1619 A 1 HETATM 36 C C33 LHG . . . N 7 127.261 148.742 129.703 1 100.43 ? C33 LHG 1619 A 1 HETATM 37 C C34 LHG . . . N 7 127.583 148.905 131.188 1 100.43 ? C34 LHG 1619 A 1 HETATM 38 C C35 LHG . . . N 7 126.289 149.172 131.959 1 100.43 ? C35 LHG 1619 A 1 HETATM 39 C C36 LHG . . . N 7 126.597 149.841 133.299 1 100.43 ? C36 LHG 1619 A 1 HETATM 40 C C37 LHG . . . N 7 125.298 150.142 134.045 1 100.43 ? C37 LHG 1619 A 1 HETATM 41 C C38 LHG . . . N 7 125.617 150.684 135.435 1 100.43 ? C38 LHG 1619 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #