data_6NT7
#
_model_server_result.job_id            qM_N8K0BVQAIkBCMXpnjcA 
_model_server_result.datetime_utc      '2024-11-21 14:25:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nt7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6NT7 
#
_exptl.entry_id    6NT7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              674.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cGAMP 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NT7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NT7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N10 O13 P2' 
_chem_comp.formula_weight    674.411 
_chem_comp.id                1SY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cGAMP 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O44 P18 1SY doub 1 n n 
O19 P18 1SY sing 2 n n 
P18 O17 1SY sing 3 n n 
P18 O20 1SY sing 4 n n 
O17 C16 1SY sing 5 n n 
O4' C4' 1SY sing 6 n n 
O4' C1' 1SY sing 7 n n 
C16 C4' 1SY sing 8 n n 
C8 N7 1SY doub 9 n y 
C8 N9 1SY sing 10 n y 
N7 C5 1SY sing 11 n y 
O20 C21 1SY sing 12 n n 
N9 C1' 1SY sing 13 n n 
N9 C4 1SY sing 14 n y 
N41 C40 1SY sing 15 n n 
C4' C3' 1SY sing 16 n n 
C1' C2' 1SY sing 17 n n 
C5 C4 1SY doub 18 n y 
C5 C6 1SY sing 19 n y 
N01 C6 1SY sing 20 n n 
C4 N3 1SY sing 21 n y 
C40 N42 1SY sing 22 n n 
C40 N39 1SY doub 23 n n 
C6 N1 1SY doub 24 n y 
N42 C36 1SY sing 25 n n 
N39 C38 1SY sing 26 n n 
C21 C22 1SY sing 27 n n 
C21 C32 1SY sing 28 n n 
O23 C22 1SY sing 29 n n 
N3 C2 1SY doub 30 n y 
C3' C2' 1SY sing 31 n n 
C3' O28 1SY sing 32 n n 
N1 C2 1SY sing 33 n y 
C2' O2' 1SY sing 34 n n 
C36 C37 1SY doub 35 n y 
C36 N33 1SY sing 36 n y 
C38 O43 1SY doub 37 n n 
C38 C37 1SY sing 38 n n 
C22 C24 1SY sing 39 n n 
C32 N33 1SY sing 40 n n 
C32 O31 1SY sing 41 n n 
C37 N35 1SY sing 42 n y 
N33 C34 1SY sing 43 n y 
O28 P27 1SY sing 44 n n 
N35 C34 1SY doub 45 n y 
O31 C24 1SY sing 46 n n 
C24 C25 1SY sing 47 n n 
O26 P27 1SY sing 48 n n 
O26 C25 1SY sing 49 n n 
P27 O29 1SY doub 50 n n 
P27 O30 1SY sing 51 n n 
C2 H1 1SY sing 52 n n 
N01 H2 1SY sing 53 n n 
N01 H3 1SY sing 54 n n 
C8 H4 1SY sing 55 n n 
C1' H5 1SY sing 56 n n 
C2' H6 1SY sing 57 n n 
O2' H7 1SY sing 58 n n 
C3' H8 1SY sing 59 n n 
C4' H9 1SY sing 60 n n 
C16 H10 1SY sing 61 n n 
C16 H11 1SY sing 62 n n 
O19 H12 1SY sing 63 n n 
C21 H13 1SY sing 64 n n 
C22 H14 1SY sing 65 n n 
O23 H15 1SY sing 66 n n 
C24 H16 1SY sing 67 n n 
C25 H17 1SY sing 68 n n 
C25 H18 1SY sing 69 n n 
O30 H19 1SY sing 70 n n 
C32 H20 1SY sing 71 n n 
C34 H21 1SY sing 72 n n 
N41 H22 1SY sing 73 n n 
N41 H23 1SY sing 74 n n 
N42 H24 1SY sing 75 n n 
#
_atom_sites.entry_id                     6NT7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           1SY 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     505 
_pdbx_nonpoly_scheme.pdb_mon_id       1SY 
_pdbx_nonpoly_scheme.auth_mon_id      1SY 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1SY . . . C 2 87.926 81.381 122.02 1 80.26 ? C2 1SY 401 A 1 
HETATM 2 N N01 1SY . . . C 2 85.59 82.864 124.198 1 80.26 ? N01 1SY 401 A 1 
HETATM 3 C C6 1SY . . . C 2 86.202 82.677 122.949 1 80.26 ? C6 1SY 401 A 1 
HETATM 4 N N1 1SY . . . C 2 87.171 81.755 123.096 1 80.26 ? N1 1SY 401 A 1 
HETATM 5 N N3 1SY . . . C 2 87.69 81.945 120.8 1 80.26 ? N3 1SY 401 A 1 
HETATM 6 C C4 1SY . . . C 2 86.692 82.862 120.665 1 80.26 ? C4 1SY 401 A 1 
HETATM 7 C C5 1SY . . . C 2 85.958 83.242 121.721 1 80.26 ? C5 1SY 401 A 1 
HETATM 8 N N7 1SY . . . C 2 85.059 84.168 121.314 1 80.26 ? N7 1SY 401 A 1 
HETATM 9 C C8 1SY . . . C 2 85.247 84.378 119.992 1 80.26 ? C8 1SY 401 A 1 
HETATM 10 N N9 1SY . . . C 2 86.259 83.577 119.614 1 80.26 ? N9 1SY 401 A 1 
HETATM 11 C C1' 1SY . . . C 2 86.701 83.538 118.326 1 80.26 ? C1' 1SY 401 A 1 
HETATM 12 C C2' 1SY . . . C 2 86.156 82.288 117.721 1 80.26 ? C2' 1SY 401 A 1 
HETATM 13 O O2' 1SY . . . C 2 87.127 81.777 116.843 1 80.26 ? O2' 1SY 401 A 1 
HETATM 14 C C3' 1SY . . . C 2 85.063 82.722 116.886 1 80.26 ? C3' 1SY 401 A 1 
HETATM 15 C C4' 1SY . . . C 2 85.55 83.986 116.455 1 80.26 ? C4' 1SY 401 A 1 
HETATM 16 C C16 1SY . . . C 2 84.368 84.898 115.982 1 80.26 ? C16 1SY 401 A 1 
HETATM 17 O O17 1SY . . . C 2 83.514 85.182 117.147 1 80.26 ? O17 1SY 401 A 1 
HETATM 18 P P18 1SY . . . C 2 82.145 85.972 116.844 1 80.26 ? P18 1SY 401 A 1 
HETATM 19 O O19 1SY . . . C 2 82.16 87.413 117.364 1 80.26 ? O19 1SY 401 A 1 
HETATM 20 O O20 1SY . . . C 2 80.722 85.131 117.176 1 80.26 ? O20 1SY 401 A 1 
HETATM 21 C C21 1SY . . . C 2 81.023 83.76 117.508 1 80.26 ? C21 1SY 401 A 1 
HETATM 22 C C22 1SY . . . C 2 81.224 82.993 116.292 1 80.26 ? C22 1SY 401 A 1 
HETATM 23 O O23 1SY . . . C 2 80.433 83.609 115.284 1 80.26 ? O23 1SY 401 A 1 
HETATM 24 C C24 1SY . . . C 2 80.694 81.634 116.567 1 80.26 ? C24 1SY 401 A 1 
HETATM 25 C C25 1SY . . . C 2 81.689 80.658 116.978 1 80.26 ? C25 1SY 401 A 1 
HETATM 26 O O26 1SY . . . C 2 82.987 81.209 117.193 1 80.26 ? O26 1SY 401 A 1 
HETATM 27 P P27 1SY . . . C 2 83.969 80.531 116.128 1 80.26 ? P27 1SY 401 A 1 
HETATM 28 O O28 1SY . . . C 2 84.989 81.779 115.785 1 80.26 ? O28 1SY 401 A 1 
HETATM 29 O O29 1SY . . . C 2 84.721 79.45 116.877 1 80.26 ? O29 1SY 401 A 1 
HETATM 30 O O30 1SY . . . C 2 83.317 79.856 114.976 1 80.26 ? O30 1SY 401 A 1 
HETATM 31 O O31 1SY . . . C 2 79.718 81.802 117.611 1 80.26 ? O31 1SY 401 A 1 
HETATM 32 C C32 1SY . . . C 2 79.885 83.121 118.14 1 80.26 ? C32 1SY 401 A 1 
HETATM 33 N N33 1SY . . . C 2 80.259 82.969 119.494 1 80.26 ? N33 1SY 401 A 1 
HETATM 34 C C34 1SY . . . C 2 81.279 82.275 120.036 1 80.26 ? C34 1SY 401 A 1 
HETATM 35 N N35 1SY . . . C 2 81.233 82.451 121.374 1 80.26 ? N35 1SY 401 A 1 
HETATM 36 C C36 1SY . . . C 2 79.59 83.582 120.482 1 80.26 ? C36 1SY 401 A 1 
HETATM 37 C C37 1SY . . . C 2 80.179 83.259 121.64 1 80.26 ? C37 1SY 401 A 1 
HETATM 38 C C38 1SY . . . C 2 79.629 83.804 122.93 1 80.26 ? C38 1SY 401 A 1 
HETATM 39 N N39 1SY . . . C 2 78.503 84.633 122.909 1 80.26 ? N39 1SY 401 A 1 
HETATM 40 C C40 1SY . . . C 2 77.886 84.958 121.668 1 80.26 ? C40 1SY 401 A 1 
HETATM 41 N N41 1SY . . . C 2 76.752 85.793 121.63 1 80.26 ? N41 1SY 401 A 1 
HETATM 42 N N42 1SY . . . C 2 78.41 84.44 120.442 1 80.26 ? N42 1SY 401 A 1 
HETATM 43 O O43 1SY . . . C 2 80.162 83.518 123.963 1 80.26 ? O43 1SY 401 A 1 
HETATM 44 O O44 1SY . . . C 2 82.144 86.113 115.309 1 80.26 ? O44 1SY 401 A 1 
HETATM 45 O O4' 1SY . . . C 2 86.106 84.607 117.588 1 80.26 ? O4' 1SY 401 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#