data_6NT8 # _model_server_result.job_id f7FZ97SqR07VByDZTjBcsg _model_server_result.datetime_utc '2024-11-29 17:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6NT8 # _exptl.entry_id 6NT8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 674.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cGAMP _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NT8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C20 H24 N10 O13 P2' _chem_comp.formula_weight 674.411 _chem_comp.id 1SY _chem_comp.mon_nstd_flag . _chem_comp.name cGAMP _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O44 P18 1SY doub 1 n n O19 P18 1SY sing 2 n n P18 O17 1SY sing 3 n n P18 O20 1SY sing 4 n n O17 C16 1SY sing 5 n n O4' C4' 1SY sing 6 n n O4' C1' 1SY sing 7 n n C16 C4' 1SY sing 8 n n C8 N7 1SY doub 9 n y C8 N9 1SY sing 10 n y N7 C5 1SY sing 11 n y O20 C21 1SY sing 12 n n N9 C1' 1SY sing 13 n n N9 C4 1SY sing 14 n y N41 C40 1SY sing 15 n n C4' C3' 1SY sing 16 n n C1' C2' 1SY sing 17 n n C5 C4 1SY doub 18 n y C5 C6 1SY sing 19 n y N01 C6 1SY sing 20 n n C4 N3 1SY sing 21 n y C40 N42 1SY sing 22 n n C40 N39 1SY doub 23 n n C6 N1 1SY doub 24 n y N42 C36 1SY sing 25 n n N39 C38 1SY sing 26 n n C21 C22 1SY sing 27 n n C21 C32 1SY sing 28 n n O23 C22 1SY sing 29 n n N3 C2 1SY doub 30 n y C3' C2' 1SY sing 31 n n C3' O28 1SY sing 32 n n N1 C2 1SY sing 33 n y C2' O2' 1SY sing 34 n n C36 C37 1SY doub 35 n y C36 N33 1SY sing 36 n y C38 O43 1SY doub 37 n n C38 C37 1SY sing 38 n n C22 C24 1SY sing 39 n n C32 N33 1SY sing 40 n n C32 O31 1SY sing 41 n n C37 N35 1SY sing 42 n y N33 C34 1SY sing 43 n y O28 P27 1SY sing 44 n n N35 C34 1SY doub 45 n y O31 C24 1SY sing 46 n n C24 C25 1SY sing 47 n n O26 P27 1SY sing 48 n n O26 C25 1SY sing 49 n n P27 O29 1SY doub 50 n n P27 O30 1SY sing 51 n n C2 H1 1SY sing 52 n n N01 H2 1SY sing 53 n n N01 H3 1SY sing 54 n n C8 H4 1SY sing 55 n n C1' H5 1SY sing 56 n n C2' H6 1SY sing 57 n n O2' H7 1SY sing 58 n n C3' H8 1SY sing 59 n n C4' H9 1SY sing 60 n n C16 H10 1SY sing 61 n n C16 H11 1SY sing 62 n n O19 H12 1SY sing 63 n n C21 H13 1SY sing 64 n n C22 H14 1SY sing 65 n n O23 H15 1SY sing 66 n n C24 H16 1SY sing 67 n n C25 H17 1SY sing 68 n n C25 H18 1SY sing 69 n n O30 H19 1SY sing 70 n n C32 H20 1SY sing 71 n n C34 H21 1SY sing 72 n n N41 H22 1SY sing 73 n n N41 H23 1SY sing 74 n n N42 H24 1SY sing 75 n n # _atom_sites.entry_id 6NT8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1SY A 1 401 505 1SY 1SY . F 2 1SY D 1 401 505 1SY 1SY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1SY . . . E 2 69.072 98.116 57.806 1 527.85 ? C2 1SY 401 A 1 HETATM 2 N N01 1SY . . . E 2 69.737 100.789 55.613 1 527.85 ? N01 1SY 401 A 1 HETATM 3 C C6 1SY . . . E 2 69.473 100.234 56.875 1 527.85 ? C6 1SY 401 A 1 HETATM 4 N N1 1SY . . . E 2 69.333 98.904 56.721 1 527.85 ? N1 1SY 401 A 1 HETATM 5 N N3 1SY . . . E 2 68.957 98.683 59.042 1 527.85 ? N3 1SY 401 A 1 HETATM 6 C C4 1SY . . . E 2 69.122 100.028 59.182 1 527.85 ? C4 1SY 401 A 1 HETATM 7 C C5 1SY . . . E 2 69.365 100.807 58.118 1 527.85 ? C5 1SY 401 A 1 HETATM 8 N N7 1SY . . . E 2 69.466 102.091 58.534 1 527.85 ? N7 1SY 401 A 1 HETATM 9 C C8 1SY . . . E 2 69.268 102.112 59.871 1 527.85 ? C8 1SY 401 A 1 HETATM 10 N N9 1SY . . . E 2 69.048 100.84 60.249 1 527.85 ? N9 1SY 401 A 1 HETATM 11 C C1' 1SY . . . E 2 68.818 100.507 61.55 1 527.85 ? C1' 1SY 401 A 1 HETATM 12 C C2' 1SY . . . E 2 70.082 99.911 62.072 1 527.85 ? C2' 1SY 401 A 1 HETATM 13 O O2' 1SY . . . E 2 69.735 98.879 62.961 1 527.85 ? O2' 1SY 401 A 1 HETATM 14 C C3' 1SY . . . E 2 70.676 100.944 62.884 1 527.85 ? C3' 1SY 401 A 1 HETATM 15 C C4' 1SY . . . E 2 69.511 101.578 63.394 1 527.85 ? C4' 1SY 401 A 1 HETATM 16 C C16 1SY . . . E 2 69.839 103.035 63.864 1 527.85 ? C16 1SY 401 A 1 HETATM 17 O O17 1SY . . . E 2 70.228 103.821 62.682 1 527.85 ? O17 1SY 401 A 1 HETATM 18 P P18 1SY . . . E 2 70.767 105.31 62.969 1 527.85 ? P18 1SY 401 A 1 HETATM 19 O O19 1SY . . . E 2 69.784 106.397 62.521 1 527.85 ? O19 1SY 401 A 1 HETATM 20 O O20 1SY . . . E 2 72.37 105.607 62.541 1 527.85 ? O20 1SY 401 A 1 HETATM 21 C C21 1SY . . . E 2 73.016 104.376 62.155 1 527.85 ? C21 1SY 401 A 1 HETATM 22 C C22 1SY . . . E 2 73.438 103.651 63.34 1 527.85 ? C22 1SY 401 A 1 HETATM 23 O O23 1SY . . . E 2 73.697 104.623 64.345 1 527.85 ? O23 1SY 401 A 1 HETATM 24 C C24 1SY . . . E 2 74.708 102.972 62.979 1 527.85 ? C24 1SY 401 A 1 HETATM 25 C C25 1SY . . . E 2 74.567 101.588 62.56 1 527.85 ? C25 1SY 401 A 1 HETATM 26 O O26 1SY . . . E 2 73.213 101.159 62.423 1 527.85 ? O26 1SY 401 A 1 HETATM 27 P P27 1SY . . . E 2 72.978 99.992 63.491 1 527.85 ? P27 1SY 401 A 1 HETATM 28 O O28 1SY . . . E 2 71.414 100.266 63.934 1 527.85 ? O28 1SY 401 A 1 HETATM 29 O O29 1SY . . . E 2 73.068 98.691 62.72 1 527.85 ? O29 1SY 401 A 1 HETATM 30 O O30 1SY . . . E 2 73.981 99.894 64.583 1 527.85 ? O30 1SY 401 A 1 HETATM 31 O O31 1SY . . . E 2 75.272 103.748 61.907 1 527.85 ? O31 1SY 401 A 1 HETATM 32 C C32 1SY . . . E 2 74.254 104.644 61.449 1 527.85 ? C32 1SY 401 A 1 HETATM 33 N N33 1SY . . . E 2 73.987 104.299 60.105 1 527.85 ? N33 1SY 401 A 1 HETATM 34 C C34 1SY . . . E 2 73.635 103.114 59.57 1 527.85 ? C34 1SY 401 A 1 HETATM 35 N N35 1SY . . . E 2 73.473 103.292 58.242 1 527.85 ? N35 1SY 401 A 1 HETATM 36 C C36 1SY . . . E 2 74.033 105.212 59.122 1 527.85 ? C36 1SY 401 A 1 HETATM 37 C C37 1SY . . . E 2 73.727 104.595 57.974 1 527.85 ? C37 1SY 401 A 1 HETATM 38 C C38 1SY . . . E 2 73.709 105.382 56.692 1 527.85 ? C38 1SY 401 A 1 HETATM 39 N N39 1SY . . . E 2 74.021 106.745 56.709 1 527.85 ? N39 1SY 401 A 1 HETATM 40 C C40 1SY . . . E 2 74.352 107.38 57.939 1 527.85 ? C40 1SY 401 A 1 HETATM 41 N N41 1SY . . . E 2 74.667 108.752 57.973 1 527.85 ? N41 1SY 401 A 1 HETATM 42 N N42 1SY . . . E 2 74.368 106.632 59.158 1 527.85 ? N42 1SY 401 A 1 HETATM 43 O O43 1SY . . . E 2 73.429 104.828 55.667 1 527.85 ? O43 1SY 401 A 1 HETATM 44 O O44 1SY . . . E 2 70.77 105.4 64.508 1 527.85 ? O44 1SY 401 A 1 HETATM 45 O O4' 1SY . . . E 2 68.616 101.697 62.315 1 527.85 ? O4' 1SY 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #