data_6NTB # _model_server_result.job_id vIDVa-8VxoPZELxHs1c65A _model_server_result.datetime_utc '2024-10-19 16:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ntb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6NTB # _exptl.entry_id 6NTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NTB _cell.length_a 132.946 _cell.length_b 132.946 _cell.length_c 33.837 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6NTB _atom_sites.fract_transf_matrix[1][1] 0.007522 _atom_sites.fract_transf_matrix[1][2] 0.004343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 201 201 ATP ATP . E 3 CL A 1 202 202 CL CL . F 2 ATP B 1 201 201 ATP ATP . G 2 ATP C 1 201 201 ATP ATP . H 4 HOH A 1 301 301 HOH HOH . H 4 HOH A 2 302 302 HOH HOH . H 4 HOH A 3 303 303 HOH HOH . H 4 HOH A 4 304 304 HOH HOH . H 4 HOH A 5 305 305 HOH HOH . H 4 HOH A 6 306 306 HOH HOH . H 4 HOH A 7 307 307 HOH HOH . H 4 HOH A 8 308 308 HOH HOH . H 4 HOH A 9 309 309 HOH HOH . H 4 HOH A 10 310 310 HOH HOH . H 4 HOH A 11 311 311 HOH HOH . H 4 HOH A 12 312 312 HOH HOH . H 4 HOH A 13 313 313 HOH HOH . H 4 HOH A 14 314 314 HOH HOH . H 4 HOH A 15 315 315 HOH HOH . H 4 HOH A 16 316 316 HOH HOH . H 4 HOH A 17 317 317 HOH HOH . I 4 HOH B 1 301 301 HOH HOH . I 4 HOH B 2 302 302 HOH HOH . I 4 HOH B 3 303 303 HOH HOH . I 4 HOH B 4 304 304 HOH HOH . I 4 HOH B 5 305 305 HOH HOH . I 4 HOH B 6 306 306 HOH HOH . I 4 HOH B 7 307 307 HOH HOH . I 4 HOH B 8 308 308 HOH HOH . I 4 HOH B 9 309 309 HOH HOH . I 4 HOH B 10 310 310 HOH HOH . I 4 HOH B 11 311 311 HOH HOH . I 4 HOH B 12 312 312 HOH HOH . I 4 HOH B 13 313 313 HOH HOH . J 4 HOH C 1 301 301 HOH HOH . J 4 HOH C 2 302 302 HOH HOH . J 4 HOH C 3 303 303 HOH HOH . J 4 HOH C 4 304 304 HOH HOH . J 4 HOH C 5 305 305 HOH HOH . J 4 HOH C 6 306 306 HOH HOH . J 4 HOH C 7 307 307 HOH HOH . J 4 HOH C 8 308 308 HOH HOH . J 4 HOH C 9 309 309 HOH HOH . J 4 HOH C 10 310 310 HOH HOH . J 4 HOH C 11 311 311 HOH HOH . J 4 HOH C 12 312 312 HOH HOH . J 4 HOH C 13 313 313 HOH HOH . J 4 HOH C 14 314 314 HOH HOH . J 4 HOH C 15 315 315 HOH HOH . J 4 HOH C 16 316 316 HOH HOH . J 4 HOH C 17 317 317 HOH HOH . J 4 HOH C 18 318 318 HOH HOH . J 4 HOH C 19 319 319 HOH HOH . J 4 HOH C 20 320 320 HOH HOH . J 4 HOH C 21 321 321 HOH HOH . J 4 HOH C 22 322 322 HOH HOH . J 4 HOH C 23 323 323 HOH HOH . J 4 HOH C 24 324 324 HOH HOH . J 4 HOH C 25 325 325 HOH HOH . J 4 HOH C 26 326 326 HOH HOH . J 4 HOH C 27 327 327 HOH HOH . J 4 HOH C 28 328 328 HOH HOH . J 4 HOH C 29 329 329 HOH HOH . J 4 HOH C 30 330 330 HOH HOH . J 4 HOH C 31 331 331 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 2 41.094 -36.747 -10.157 1 47.52 ? PG ATP 201 C 1 HETATM 2 O O1G ATP . . . G 2 41.525 -35.291 -10.052 1 54.52 ? O1G ATP 201 C 1 HETATM 3 O O2G ATP . . . G 2 42.237 -37.723 -10.126 1 44.03 ? O2G ATP 201 C 1 HETATM 4 O O3G ATP . . . G 2 40.103 -36.943 -11.271 1 63 ? O3G ATP 201 C 1 HETATM 5 P PB ATP . . . G 2 39.479 -38.33 -8.386 1 46.53 ? PB ATP 201 C 1 HETATM 6 O O1B ATP . . . G 2 38.315 -38.522 -9.319 1 54.71 ? O1B ATP 201 C 1 HETATM 7 O O2B ATP . . . G 2 40.54 -39.384 -8.252 1 47.94 ? O2B ATP 201 C 1 HETATM 8 O O3B ATP . . . G 2 40.217 -36.953 -8.826 1 41.4 ? O3B ATP 201 C 1 HETATM 9 P PA ATP . . . G 2 39.406 -37.775 -5.523 1 44.32 ? PA ATP 201 C 1 HETATM 10 O O1A ATP . . . G 2 40.423 -38.841 -5.222 1 43.18 ? O1A ATP 201 C 1 HETATM 11 O O2A ATP . . . G 2 38.224 -37.533 -4.624 1 37.1 ? O2A ATP 201 C 1 HETATM 12 O O3A ATP . . . G 2 38.776 -37.916 -7.006 1 37.73 ? O3A ATP 201 C 1 HETATM 13 O O5' ATP . . . G 2 40.223 -36.384 -5.66 1 50.93 ? O5' ATP 201 C 1 HETATM 14 C C5' ATP . . . G 2 39.506 -35.159 -5.778 1 42.12 ? C5' ATP 201 C 1 HETATM 15 C C4' ATP . . . G 2 40.487 -33.981 -5.679 1 40.53 ? C4' ATP 201 C 1 HETATM 16 O O4' ATP . . . G 2 40.909 -33.89 -4.322 1 38.12 ? O4' ATP 201 C 1 HETATM 17 C C3' ATP . . . G 2 41.776 -34.147 -6.462 1 36.26 ? C3' ATP 201 C 1 HETATM 18 O O3' ATP . . . G 2 41.713 -33.688 -7.81 1 38.13 ? O3' ATP 201 C 1 HETATM 19 C C2' ATP . . . G 2 42.781 -33.328 -5.673 1 42.97 ? C2' ATP 201 C 1 HETATM 20 O O2' ATP . . . G 2 42.646 -31.933 -5.985 1 40 ? O2' ATP 201 C 1 HETATM 21 C C1' ATP . . . G 2 42.281 -33.501 -4.265 1 45 ? C1' ATP 201 C 1 HETATM 22 N N9 ATP . . . G 2 43.034 -34.553 -3.553 1 43.46 ? N9 ATP 201 C 1 HETATM 23 C C8 ATP . . . G 2 42.795 -35.882 -3.617 1 52.75 ? C8 ATP 201 C 1 HETATM 24 N N7 ATP . . . G 2 43.656 -36.577 -2.835 1 44.76 ? N7 ATP 201 C 1 HETATM 25 C C5 ATP . . . G 2 44.456 -35.66 -2.245 1 51.87 ? C5 ATP 201 C 1 HETATM 26 C C6 ATP . . . G 2 45.578 -35.708 -1.291 1 43.43 ? C6 ATP 201 C 1 HETATM 27 N N6 ATP . . . G 2 45.996 -36.91 -0.819 1 42.86 ? N6 ATP 201 C 1 HETATM 28 N N1 ATP . . . G 2 46.145 -34.532 -0.924 1 43.41 ? N1 ATP 201 C 1 HETATM 29 C C2 ATP . . . G 2 45.717 -33.342 -1.403 1 39.91 ? C2 ATP 201 C 1 HETATM 30 N N3 ATP . . . G 2 44.701 -33.222 -2.274 1 41.28 ? N3 ATP 201 C 1 HETATM 31 C C4 ATP . . . G 2 44.044 -34.328 -2.72 1 46.85 ? C4 ATP 201 C 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #