data_6NTW # _model_server_result.job_id gyjLWkP-SnOC2D5zy2WcVg _model_server_result.datetime_utc '2024-11-28 06:59:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ntw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6NTW # _exptl.entry_id 6NTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NTW _cell.length_a 126.499 _cell.length_b 126.499 _cell.length_c 88.801 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 498 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 528 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MXR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MXR _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 0.89 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MXR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'meropenem bound form (tautomerism)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 N23 MXR sing 237 n n O12 C11 MXR doub 238 n n C25 N23 MXR sing 239 n n O13 C11 MXR sing 240 n n N23 C22 MXR sing 241 n n C11 C5 MXR sing 242 n n C22 C17 MXR sing 243 n n C22 O24 MXR doub 244 n n C17 C16 MXR sing 245 n n C17 N19 MXR sing 246 n n C5 N10 MXR doub 247 n n C5 C2 MXR sing 248 n n N10 C4 MXR sing 249 n n C16 C15 MXR sing 250 n n N19 C21 MXR sing 251 n n C2 S14 MXR sing 252 n n C2 C18 MXR sing 253 n n O6 C1 MXR doub 254 n n S14 C15 MXR sing 255 n n C1 C3 MXR sing 256 n n C15 C21 MXR sing 257 n n C4 C18 MXR sing 258 n n C4 C3 MXR sing 259 n n C18 C20 MXR sing 260 n n C3 C7 MXR sing 261 n n C7 C9 MXR sing 262 n n C7 O8 MXR sing 263 n n C1 H1 MXR sing 264 n n C2 H3 MXR sing 265 n n C3 H4 MXR sing 266 n n C4 H5 MXR sing 267 n n C7 H8 MXR sing 268 n n O8 H9 MXR sing 269 n n C9 H10 MXR sing 270 n n C9 H11 MXR sing 271 n n C9 H12 MXR sing 272 n n O13 H15 MXR sing 273 n n C15 H16 MXR sing 274 n n C16 H17 MXR sing 275 n n C16 H18 MXR sing 276 n n C17 H19 MXR sing 277 n n C18 H20 MXR sing 278 n n N19 H21 MXR sing 279 n n C20 H23 MXR sing 280 n n C20 H24 MXR sing 281 n n C20 H25 MXR sing 282 n n C21 H26 MXR sing 283 n n C21 H27 MXR sing 284 n n C25 H28 MXR sing 285 n n C25 H29 MXR sing 286 n n C25 H30 MXR sing 287 n n C26 H31 MXR sing 288 n n C26 H32 MXR sing 289 n n C26 H33 MXR sing 290 n n # _atom_sites.entry_id 6NTW _atom_sites.fract_transf_matrix[1][1] 0.007905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXR A 1 701 1 MXR MXR . C 3 SO4 A 1 702 1 SO4 SO4 . D 3 SO4 A 1 703 2 SO4 SO4 . E 3 SO4 A 1 704 3 SO4 SO4 . F 3 SO4 A 1 705 4 SO4 SO4 . G 3 SO4 A 1 706 6 SO4 SO4 . H 4 HOH A 1 801 3 HOH HOH . H 4 HOH A 2 802 17 HOH HOH . H 4 HOH A 3 803 19 HOH HOH . H 4 HOH A 4 804 12 HOH HOH . H 4 HOH A 5 805 1 HOH HOH . H 4 HOH A 6 806 13 HOH HOH . H 4 HOH A 7 807 6 HOH HOH . H 4 HOH A 8 808 5 HOH HOH . H 4 HOH A 9 809 24 HOH HOH . H 4 HOH A 10 810 20 HOH HOH . H 4 HOH A 11 811 4 HOH HOH . H 4 HOH A 12 812 18 HOH HOH . H 4 HOH A 13 813 2 HOH HOH . H 4 HOH A 14 814 7 HOH HOH . H 4 HOH A 15 815 22 HOH HOH . H 4 HOH A 16 816 14 HOH HOH . H 4 HOH A 17 817 21 HOH HOH . H 4 HOH A 18 818 10 HOH HOH . H 4 HOH A 19 819 16 HOH HOH . H 4 HOH A 20 820 23 HOH HOH . H 4 HOH A 21 821 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXR . . . B 2 18.48 -35.343 41.781 1 74.81 ? C1 MXR 701 A 1 HETATM 2 C C2 MXR . . . B 2 20.973 -31.879 43.943 1 98.44 ? C2 MXR 701 A 1 HETATM 3 C C3 MXR . . . B 2 18.597 -34.413 42.95 1 80.62 ? C3 MXR 701 A 1 HETATM 4 C C4 MXR . . . B 2 19.673 -33.337 42.759 1 82.99 ? C4 MXR 701 A 1 HETATM 5 C C5 MXR . . . B 2 21.677 -33.122 43.709 1 85.73 ? C5 MXR 701 A 1 HETATM 6 O O6 MXR . . . B 2 19.49 -35.37 41.141 1 81.99 ? O6 MXR 701 A 1 HETATM 7 C C7 MXR . . . B 2 17.287 -33.685 43.169 1 80.73 ? C7 MXR 701 A 1 HETATM 8 O O8 MXR . . . B 2 16.779 -34.02 44.45 1 83.06 ? O8 MXR 701 A 1 HETATM 9 C C9 MXR . . . B 2 16.229 -34.016 42.133 1 77.35 ? C9 MXR 701 A 1 HETATM 10 N N10 MXR . . . B 2 21 -33.888 43.003 1 81.24 ? N10 MXR 701 A 1 HETATM 11 C C11 MXR . . . B 2 23.001 -33.302 44.267 1 87.85 ? C11 MXR 701 A 1 HETATM 12 O O12 MXR . . . B 2 23.573 -34.348 44.294 1 94.16 ? O12 MXR 701 A 1 HETATM 13 O O13 MXR . . . B 2 23.621 -32.266 44.78 1 85.62 ? O13 MXR 701 A 1 HETATM 14 S S14 MXR . . . B 2 21.337 -30.966 42.523 1 96.61 ? S14 MXR 701 A 1 HETATM 15 C C15 MXR . . . B 2 22.037 -31.936 41.272 1 85.53 ? C15 MXR 701 A 1 HETATM 16 C C16 MXR . . . B 2 22.282 -30.864 40.257 1 83.82 ? C16 MXR 701 A 1 HETATM 17 C C17 MXR . . . B 2 23.314 -30.007 40.949 1 84.71 ? C17 MXR 701 A 1 HETATM 18 C C18 MXR . . . B 2 19.576 -32.355 43.871 1 86.79 ? C18 MXR 701 A 1 HETATM 19 N N19 MXR . . . B 2 23.943 -30.897 41.923 1 91.02 ? N19 MXR 701 A 1 HETATM 20 C C20 MXR . . . B 2 19.266 -33.103 45.14 1 88.85 ? C20 MXR 701 A 1 HETATM 21 C C21 MXR . . . B 2 23.441 -32.243 41.66 1 85.07 ? C21 MXR 701 A 1 HETATM 22 C C22 MXR . . . B 2 24.364 -29.573 40.004 1 83.55 ? C22 MXR 701 A 1 HETATM 23 N N23 MXR . . . B 2 24.533 -30.367 38.986 1 81.22 ? N23 MXR 701 A 1 HETATM 24 O O24 MXR . . . B 2 24.998 -28.571 40.197 1 79.47 ? O24 MXR 701 A 1 HETATM 25 C C25 MXR . . . B 2 24.466 -29.903 37.621 1 79.76 ? C25 MXR 701 A 1 HETATM 26 C C26 MXR . . . B 2 24.757 -31.784 39.168 1 77.92 ? C26 MXR 701 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #