data_6NTZ # _model_server_result.job_id pS8Kdo6xSBdPhZyTJETaNQ _model_server_result.datetime_utc '2024-11-24 14:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ntz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6NTZ # _exptl.entry_id 6NTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.69 _cell.angle_gamma 90 _cell.entry_id 6NTZ _cell.length_a 124.81 _cell.length_b 50.8 _cell.length_c 80.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 73 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MXR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MXR _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 0.949 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MXR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'meropenem bound form (tautomerism)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 N23 MXR sing 237 n n O12 C11 MXR doub 238 n n C25 N23 MXR sing 239 n n O13 C11 MXR sing 240 n n N23 C22 MXR sing 241 n n C11 C5 MXR sing 242 n n C22 C17 MXR sing 243 n n C22 O24 MXR doub 244 n n C17 C16 MXR sing 245 n n C17 N19 MXR sing 246 n n C5 N10 MXR doub 247 n n C5 C2 MXR sing 248 n n N10 C4 MXR sing 249 n n C16 C15 MXR sing 250 n n N19 C21 MXR sing 251 n n C2 S14 MXR sing 252 n n C2 C18 MXR sing 253 n n O6 C1 MXR doub 254 n n S14 C15 MXR sing 255 n n C1 C3 MXR sing 256 n n C15 C21 MXR sing 257 n n C4 C18 MXR sing 258 n n C4 C3 MXR sing 259 n n C18 C20 MXR sing 260 n n C3 C7 MXR sing 261 n n C7 C9 MXR sing 262 n n C7 O8 MXR sing 263 n n C1 H1 MXR sing 264 n n C2 H3 MXR sing 265 n n C3 H4 MXR sing 266 n n C4 H5 MXR sing 267 n n C7 H8 MXR sing 268 n n O8 H9 MXR sing 269 n n C9 H10 MXR sing 270 n n C9 H11 MXR sing 271 n n C9 H12 MXR sing 272 n n O13 H15 MXR sing 273 n n C15 H16 MXR sing 274 n n C16 H17 MXR sing 275 n n C16 H18 MXR sing 276 n n C17 H19 MXR sing 277 n n C18 H20 MXR sing 278 n n N19 H21 MXR sing 279 n n C20 H23 MXR sing 280 n n C20 H24 MXR sing 281 n n C20 H25 MXR sing 282 n n C21 H26 MXR sing 283 n n C21 H27 MXR sing 284 n n C25 H28 MXR sing 285 n n C25 H29 MXR sing 286 n n C25 H30 MXR sing 287 n n C26 H31 MXR sing 288 n n C26 H32 MXR sing 289 n n C26 H33 MXR sing 290 n n # _atom_sites.entry_id 6NTZ _atom_sites.fract_transf_matrix[1][1] 0.008012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXR A 1 501 501 MXR MXR . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 606 HOH HOH . C 3 HOH A 6 606 605 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 610 HOH HOH . C 3 HOH A 10 610 609 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 613 HOH HOH . C 3 HOH A 13 613 612 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 618 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 619 HOH HOH . C 3 HOH A 19 619 620 HOH HOH . C 3 HOH A 20 620 621 HOH HOH . C 3 HOH A 21 621 623 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 625 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 616 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 629 HOH HOH . C 3 HOH A 29 629 630 HOH HOH . C 3 HOH A 30 630 628 HOH HOH . C 3 HOH A 31 631 632 HOH HOH . C 3 HOH A 32 632 631 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 637 HOH HOH . C 3 HOH A 37 637 636 HOH HOH . C 3 HOH A 38 638 639 HOH HOH . C 3 HOH A 39 639 638 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 645 HOH HOH . C 3 HOH A 43 643 642 HOH HOH . C 3 HOH A 44 644 643 HOH HOH . C 3 HOH A 45 645 644 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 651 HOH HOH . C 3 HOH A 51 651 652 HOH HOH . C 3 HOH A 52 652 650 HOH HOH . C 3 HOH A 53 653 655 HOH HOH . C 3 HOH A 54 654 653 HOH HOH . C 3 HOH A 55 655 654 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 658 HOH HOH . C 3 HOH A 58 658 657 HOH HOH . C 3 HOH A 59 659 661 HOH HOH . C 3 HOH A 60 660 659 HOH HOH . C 3 HOH A 61 661 660 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . C 3 HOH A 76 676 676 HOH HOH . C 3 HOH A 77 677 677 HOH HOH . C 3 HOH A 78 678 678 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXR . . . B 2 31.068 -9.201 30.942 1 63.97 ? C1 MXR 501 A 1 HETATM 2 C C2 MXR . . . B 2 30.159 -7.469 34.615 1 67.53 ? C2 MXR 501 A 1 HETATM 3 C C3 MXR . . . B 2 31.303 -9.821 32.305 1 63.01 ? C3 MXR 501 A 1 HETATM 4 C C4 MXR . . . B 2 30.221 -9.576 33.374 1 71.04 ? C4 MXR 501 A 1 HETATM 5 C C5 MXR . . . B 2 29.182 -7.599 33.524 1 64.56 ? C5 MXR 501 A 1 HETATM 6 O O6 MXR . . . B 2 31.664 -8.206 30.557 1 47.72 ? O6 MXR 501 A 1 HETATM 7 C C7 MXR . . . B 2 31.353 -11.325 32.135 1 57.76 ? C7 MXR 501 A 1 HETATM 8 O O8 MXR . . . B 2 31.585 -11.834 33.419 1 55.15 ? O8 MXR 501 A 1 HETATM 9 C C9 MXR . . . B 2 32.48 -11.815 31.27 1 51.24 ? C9 MXR 501 A 1 HETATM 10 N N10 MXR . . . B 2 29.303 -8.616 32.851 1 65.56 ? N10 MXR 501 A 1 HETATM 11 C C11 MXR . . . B 2 28.152 -6.655 33.228 1 66.36 ? C11 MXR 501 A 1 HETATM 12 O O12 MXR . . . B 2 26.983 -7.13 32.904 1 55.17 ? O12 MXR 501 A 1 HETATM 13 O O13 MXR . . . B 2 28.365 -5.467 33.278 1 59.01 ? O13 MXR 501 A 1 HETATM 14 S S14 MXR . . . B 2 29.35 -6.811 36.032 1 58.92 ? S14 MXR 501 A 1 HETATM 15 C C15 MXR . . . B 2 29.227 -7.772 37.484 1 83.66 ? C15 MXR 501 A 1 HETATM 16 C C16 MXR . . . B 2 30.582 -8.137 38.044 1 86.28 ? C16 MXR 501 A 1 HETATM 17 C C17 MXR . . . B 2 30.575 -7.803 39.525 1 83.84 ? C17 MXR 501 A 1 HETATM 18 C C18 MXR . . . B 2 30.697 -8.873 34.634 1 62.29 ? C18 MXR 501 A 1 HETATM 19 N N19 MXR . . . B 2 29.215 -7.39 39.853 1 83.9 ? N19 MXR 501 A 1 HETATM 20 C C20 MXR . . . B 2 32.196 -8.772 34.594 1 72.12 ? C20 MXR 501 A 1 HETATM 21 C C21 MXR . . . B 2 28.608 -6.938 38.591 1 83.39 ? C21 MXR 501 A 1 HETATM 22 C C22 MXR . . . B 2 30.991 -9.003 40.299 1 86.58 ? C22 MXR 501 A 1 HETATM 23 N N23 MXR . . . B 2 30.392 -10.152 40.072 1 78.83 ? N23 MXR 501 A 1 HETATM 24 O O24 MXR . . . B 2 31.897 -8.91 41.084 1 78.07 ? O24 MXR 501 A 1 HETATM 25 C C25 MXR . . . B 2 29.01 -10.291 39.691 1 76.83 ? C25 MXR 501 A 1 HETATM 26 C C26 MXR . . . B 2 31.103 -11.398 40.185 1 76.78 ? C26 MXR 501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #