data_6NUD
#
_model_server_result.job_id            ImRIMsrzcrwxQ16FSTF8kQ 
_model_server_result.datetime_utc      '2024-10-11 02:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":801}' 
#
_entry.id    6NUD 
#
_exptl.entry_id    6NUD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog 'U-A PAIR' hydrog1 C O4 U 10 H U 10 1_555 G N6 A 33 U A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-G PAIR' hydrog2 C O2 C 12 H C 12 1_555 G N1 G 31 U G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-A MISPAIR' hydrog3 C O2 C 12 H C 12 1_555 G N6 A 32 U A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-G PAIR' hydrog4 C N4 C 17 H C 17 1_555 G O6 G 26 U G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-U MISPAIR' hydrog5 C N4 C 17 H C 17 1_555 G O4 U 27 U U 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'U-A PAIR' hydrog6 C O4 U 18 H U 18 1_555 G N6 A 25 U A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_8_PAIR hydrog7 C N1 G 19 H G 19 1_555 G N1 A 25 U A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_8_PAIR hydrog8 C O6 G 19 H G 19 1_555 G N6 A 25 U A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-U PAIR' hydrog9 C N6 A 23 H A 23 1_555 G O4 U 20 U U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 C N1 A 24 H A 24 1_555 G N3 U 19 U U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 C N6 A 24 H A 24 1_555 G O4 U 19 U U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-A MISPAIR' hydrog12 C N4 C 27 H C 27 1_555 G N1 A 17 U A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'U-A PAIR' hydrog13 C O2 U 28 H U 28 1_555 G N6 A 15 U A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_8_PAIR hydrog14 C N1 G 29 H G 29 1_555 G N1 A 13 U A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_8_PAIR hydrog15 C O6 G 29 H G 29 1_555 G N6 A 13 U A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 C N3 U 30 H U 30 1_555 G N1 A 13 U A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 C O4 U 30 H U 30 1_555 G N6 A 13 U A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'U-A PAIR' hydrog18 C N3 U 36 H U 36 1_555 G N1 A 8 U A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 109 n n 
PG O2G ATP sing 110 n n 
PG O3G ATP sing 111 n n 
PG O3B ATP sing 112 n n 
O2G HOG2 ATP sing 113 n n 
O3G HOG3 ATP sing 114 n n 
PB O1B ATP doub 115 n n 
PB O2B ATP sing 116 n n 
PB O3B ATP sing 117 n n 
PB O3A ATP sing 118 n n 
O2B HOB2 ATP sing 119 n n 
PA O1A ATP doub 120 n n 
PA O2A ATP sing 121 n n 
PA O3A ATP sing 122 n n 
PA O5' ATP sing 123 n n 
O2A HOA2 ATP sing 124 n n 
O5' C5' ATP sing 125 n n 
C5' C4' ATP sing 126 n n 
C5' "H5'1" ATP sing 127 n n 
C5' "H5'2" ATP sing 128 n n 
C4' O4' ATP sing 129 n n 
C4' C3' ATP sing 130 n n 
C4' H4' ATP sing 131 n n 
O4' C1' ATP sing 132 n n 
C3' O3' ATP sing 133 n n 
C3' C2' ATP sing 134 n n 
C3' H3' ATP sing 135 n n 
O3' HO3' ATP sing 136 n n 
C2' O2' ATP sing 137 n n 
C2' C1' ATP sing 138 n n 
C2' H2' ATP sing 139 n n 
O2' HO2' ATP sing 140 n n 
C1' N9 ATP sing 141 n n 
C1' H1' ATP sing 142 n n 
N9 C8 ATP sing 143 n y 
N9 C4 ATP sing 144 n y 
C8 N7 ATP doub 145 n y 
C8 H8 ATP sing 146 n n 
N7 C5 ATP sing 147 n y 
C5 C6 ATP sing 148 n y 
C5 C4 ATP doub 149 n y 
C6 N6 ATP sing 150 n n 
C6 N1 ATP doub 151 n y 
N6 HN61 ATP sing 152 n n 
N6 HN62 ATP sing 153 n n 
N1 C2 ATP sing 154 n y 
C2 N3 ATP doub 155 n y 
C2 H2 ATP sing 156 n n 
N3 C4 ATP sing 157 n y 
#
_atom_sites.entry_id                     6NUD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          M 
_pdbx_nonpoly_scheme.entity_id        7 
_pdbx_nonpoly_scheme.mon_id           ATP 
_pdbx_nonpoly_scheme.pdb_strand_id    J 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      801 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       ATP 
_pdbx_nonpoly_scheme.auth_mon_id      ATP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 7 216.332 213.263 238.169 1 0 ? PG ATP 801 J 1 
HETATM 2 O O1G ATP . . . M 7 215.787 214.508 237.511 1 0 ? O1G ATP 801 J 1 
HETATM 3 O O2G ATP . . . M 7 216.148 211.999 237.363 1 0 ? O2G ATP 801 J 1 
HETATM 4 O O3G ATP . . . M 7 217.711 213.427 238.763 1 0 ? O3G ATP 801 J 1 
HETATM 5 P PB ATP . . . M 7 213.792 212.854 239.281 1 0 ? PB ATP 801 J 1 
HETATM 6 O O1B ATP . . . M 7 213.205 214.152 238.781 1 0 ? O1B ATP 801 J 1 
HETATM 7 O O2B ATP . . . M 7 213.549 211.574 238.518 1 0 ? O2B ATP 801 J 1 
HETATM 8 O O3B ATP . . . M 7 215.382 213.052 239.452 1 0 ? O3B ATP 801 J 1 
HETATM 9 P PA ATP . . . M 7 211.786 212.197 241.116 1 0 ? PA ATP 801 J 1 
HETATM 10 O O1A ATP . . . M 7 211.616 210.756 240.699 1 0 ? O1A ATP 801 J 1 
HETATM 11 O O2A ATP . . . M 7 210.858 213.252 240.565 1 0 ? O2A ATP 801 J 1 
HETATM 12 O O3A ATP . . . M 7 213.303 212.634 240.799 1 0 ? O3A ATP 801 J 1 
HETATM 13 O O5' ATP . . . M 7 211.727 212.264 242.724 1 0 ? O5' ATP 801 J 1 
HETATM 14 C C5' ATP . . . M 7 210.571 211.811 243.426 1 0 ? C5' ATP 801 J 1 
HETATM 15 C C4' ATP . . . M 7 210.743 212.081 244.915 1 0 ? C4' ATP 801 J 1 
HETATM 16 O O4' ATP . . . M 7 210.651 213.484 245.178 1 0 ? O4' ATP 801 J 1 
HETATM 17 C C3' ATP . . . M 7 209.66 211.403 245.739 1 0 ? C3' ATP 801 J 1 
HETATM 18 O O3' ATP . . . M 7 210.214 210.302 246.465 1 0 ? O3' ATP 801 J 1 
HETATM 19 C C2' ATP . . . M 7 209.149 212.456 246.702 1 0 ? C2' ATP 801 J 1 
HETATM 20 O O2' ATP . . . M 7 209.381 212.044 248.051 1 0 ? O2' ATP 801 J 1 
HETATM 21 C C1' ATP . . . M 7 209.941 213.718 246.397 1 0 ? C1' ATP 801 J 1 
HETATM 22 N N9 ATP . . . M 7 209.014 214.867 246.242 1 0 ? N9 ATP 801 J 1 
HETATM 23 C C8 ATP . . . M 7 208.382 215.219 245.107 1 0 ? C8 ATP 801 J 1 
HETATM 24 N N7 ATP . . . M 7 207.604 216.315 245.3 1 0 ? N7 ATP 801 J 1 
HETATM 25 C C5 ATP . . . M 7 207.734 216.681 246.588 1 0 ? C5 ATP 801 J 1 
HETATM 26 C C6 ATP . . . M 7 207.189 217.754 247.453 1 0 ? C6 ATP 801 J 1 
HETATM 27 N N6 ATP . . . M 7 206.327 218.678 246.964 1 0 ? N6 ATP 801 J 1 
HETATM 28 N N1 ATP . . . M 7 207.582 217.779 248.746 1 0 ? N1 ATP 801 J 1 
HETATM 29 C C2 ATP . . . M 7 208.438 216.868 249.243 1 0 ? C2 ATP 801 J 1 
HETATM 30 N N3 ATP . . . M 7 208.971 215.869 248.516 1 0 ? N3 ATP 801 J 1 
HETATM 31 C C4 ATP . . . M 7 208.664 215.723 247.205 1 0 ? C4 ATP 801 J 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#