data_6NUP # _model_server_result.job_id xN3KdkbbZtS1qGkVPhGncw _model_server_result.datetime_utc '2025-04-23 14:39:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6NUP # _exptl.entry_id 6NUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NUP _cell.length_a 32.74 _cell.length_b 45.16 _cell.length_c 60.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 59 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 62 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 33 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6NUP _atom_sites.fract_transf_matrix[1][1] 0.030544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 200 200 CIT CIT . C 2 CIT A 1 201 201 CIT CIT . D 3 HOH A 1 301 103 HOH HOH . D 3 HOH A 2 302 45 HOH HOH . D 3 HOH A 3 303 16 HOH HOH . D 3 HOH A 4 304 114 HOH HOH . D 3 HOH A 5 305 62 HOH HOH . D 3 HOH A 6 306 113 HOH HOH . D 3 HOH A 7 307 73 HOH HOH . D 3 HOH A 8 308 143 HOH HOH . D 3 HOH A 9 309 41 HOH HOH . D 3 HOH A 10 310 14 HOH HOH . D 3 HOH A 11 311 37 HOH HOH . D 3 HOH A 12 312 2 HOH HOH . D 3 HOH A 13 313 52 HOH HOH . D 3 HOH A 14 314 23 HOH HOH . D 3 HOH A 15 315 21 HOH HOH . D 3 HOH A 16 316 71 HOH HOH . D 3 HOH A 17 317 137 HOH HOH . D 3 HOH A 18 318 140 HOH HOH . D 3 HOH A 19 319 162 HOH HOH . D 3 HOH A 20 320 153 HOH HOH . D 3 HOH A 21 321 63 HOH HOH . D 3 HOH A 22 322 56 HOH HOH . D 3 HOH A 23 323 117 HOH HOH . D 3 HOH A 24 324 158 HOH HOH . D 3 HOH A 25 325 107 HOH HOH . D 3 HOH A 26 326 78 HOH HOH . D 3 HOH A 27 327 19 HOH HOH . D 3 HOH A 28 328 92 HOH HOH . D 3 HOH A 29 329 5 HOH HOH . D 3 HOH A 30 330 18 HOH HOH . D 3 HOH A 31 331 58 HOH HOH . D 3 HOH A 32 332 22 HOH HOH . D 3 HOH A 33 333 108 HOH HOH . D 3 HOH A 34 334 97 HOH HOH . D 3 HOH A 35 335 1 HOH HOH . D 3 HOH A 36 336 110 HOH HOH . D 3 HOH A 37 337 11 HOH HOH . D 3 HOH A 38 338 27 HOH HOH . D 3 HOH A 39 339 152 HOH HOH . D 3 HOH A 40 340 149 HOH HOH . D 3 HOH A 41 341 25 HOH HOH . D 3 HOH A 42 342 15 HOH HOH . D 3 HOH A 43 343 116 HOH HOH . D 3 HOH A 44 344 88 HOH HOH . D 3 HOH A 45 345 147 HOH HOH . D 3 HOH A 46 346 13 HOH HOH . D 3 HOH A 47 347 10 HOH HOH . D 3 HOH A 48 348 104 HOH HOH . D 3 HOH A 49 349 35 HOH HOH . D 3 HOH A 50 350 44 HOH HOH . D 3 HOH A 51 351 7 HOH HOH . D 3 HOH A 52 352 59 HOH HOH . D 3 HOH A 53 353 46 HOH HOH . D 3 HOH A 54 354 165 HOH HOH . D 3 HOH A 55 355 50 HOH HOH . D 3 HOH A 56 356 151 HOH HOH . D 3 HOH A 57 357 121 HOH HOH . D 3 HOH A 58 358 29 HOH HOH . D 3 HOH A 59 359 38 HOH HOH . D 3 HOH A 60 360 26 HOH HOH . D 3 HOH A 61 361 79 HOH HOH . D 3 HOH A 62 362 72 HOH HOH . D 3 HOH A 63 363 131 HOH HOH . D 3 HOH A 64 364 98 HOH HOH . D 3 HOH A 65 365 128 HOH HOH . D 3 HOH A 66 366 76 HOH HOH . D 3 HOH A 67 367 89 HOH HOH . D 3 HOH A 68 368 6 HOH HOH . D 3 HOH A 69 369 4 HOH HOH . D 3 HOH A 70 370 66 HOH HOH . D 3 HOH A 71 371 68 HOH HOH . D 3 HOH A 72 372 84 HOH HOH . D 3 HOH A 73 373 159 HOH HOH . D 3 HOH A 74 374 48 HOH HOH . D 3 HOH A 75 375 43 HOH HOH . D 3 HOH A 76 376 133 HOH HOH . D 3 HOH A 77 377 64 HOH HOH . D 3 HOH A 78 378 136 HOH HOH . D 3 HOH A 79 379 67 HOH HOH . D 3 HOH A 80 380 49 HOH HOH . D 3 HOH A 81 381 51 HOH HOH . D 3 HOH A 82 382 75 HOH HOH . D 3 HOH A 83 383 126 HOH HOH . D 3 HOH A 84 384 139 HOH HOH . D 3 HOH A 85 385 90 HOH HOH . D 3 HOH A 86 386 106 HOH HOH . D 3 HOH A 87 387 142 HOH HOH . D 3 HOH A 88 388 130 HOH HOH . D 3 HOH A 89 389 111 HOH HOH . D 3 HOH A 90 390 127 HOH HOH . D 3 HOH A 91 391 164 HOH HOH . D 3 HOH A 92 392 86 HOH HOH . D 3 HOH A 93 393 144 HOH HOH . D 3 HOH A 94 394 155 HOH HOH . D 3 HOH A 95 395 124 HOH HOH . D 3 HOH A 96 396 134 HOH HOH . D 3 HOH A 97 397 145 HOH HOH . D 3 HOH A 98 398 123 HOH HOH . D 3 HOH A 99 399 163 HOH HOH . D 3 HOH A 100 400 100 HOH HOH . D 3 HOH A 101 401 161 HOH HOH . D 3 HOH A 102 402 96 HOH HOH . D 3 HOH A 103 403 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 2 17.932 -21.058 16.849 0.88 48.2 ? C1 CIT 201 A 1 HETATM 2 O O1 CIT . . . C 2 19.029 -21.207 16.262 0.88 46.06 ? O1 CIT 201 A 1 HETATM 3 O O2 CIT . . . C 2 17.861 -21.36 18.061 0.88 45.68 ? O2 CIT 201 A 1 HETATM 4 C C2 CIT . . . C 2 16.738 -20.525 16.08 0.88 52.43 ? C2 CIT 201 A 1 HETATM 5 C C3 CIT . . . C 2 15.389 -20.874 16.718 0.88 52.96 ? C3 CIT 201 A 1 HETATM 6 O O7 CIT . . . C 2 15.279 -22.313 16.914 0.88 53.41 ? O7 CIT 201 A 1 HETATM 7 C C4 CIT . . . C 2 14.276 -20.378 15.797 0.88 49.28 ? C4 CIT 201 A 1 HETATM 8 C C5 CIT . . . C 2 12.919 -20.896 16.209 0.88 44.35 ? C5 CIT 201 A 1 HETATM 9 O O3 CIT . . . C 2 11.908 -20.206 15.974 0.88 39.68 ? O3 CIT 201 A 1 HETATM 10 O O4 CIT . . . C 2 12.775 -21.995 16.794 0.88 41.2 ? O4 CIT 201 A 1 HETATM 11 C C6 CIT . . . C 2 15.27 -20.137 18.04 0.88 50.59 ? C6 CIT 201 A 1 HETATM 12 O O5 CIT . . . C 2 15.623 -18.941 18.115 0.88 48.81 ? O5 CIT 201 A 1 HETATM 13 O O6 CIT . . . C 2 14.837 -20.72 19.062 0.88 49.88 ? O6 CIT 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #