data_6NUQ # _model_server_result.job_id OwcXibkPYZ7P8HXyWplTcw _model_server_result.datetime_utc '2025-02-05 19:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6NUQ # _exptl.entry_id 6NUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 835.789 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2-{[(5S,8S,10aR)-3-acetyl-8-({(2S)-5-amino-1-[(diphenylmethyl)amino]-1,5-dioxopentan-2-yl}carbamoyl)-6-oxodecahydropyrrolo[1,2-a][1,5]diazocin-5-yl]carbamoyl}-1H-indol-5-yl)(difluoro)methyl]phosphonic acid (non-preferred name)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NUQ _cell.length_a 84.187 _cell.length_b 84.187 _cell.length_c 206.367 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H44 F2 N7 O9 P' _chem_comp.formula_weight 835.789 _chem_comp.id KQV _chem_comp.mon_nstd_flag . _chem_comp.name '[(2-{[(5S,8S,10aR)-3-acetyl-8-({(2S)-5-amino-1-[(diphenylmethyl)amino]-1,5-dioxopentan-2-yl}carbamoyl)-6-oxodecahydropyrrolo[1,2-a][1,5]diazocin-5-yl]carbamoyl}-1H-indol-5-yl)(difluoro)methyl]phosphonic acid (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C34 KQV sing 173 n n O6 C34 KQV doub 174 n n C34 N6 KQV sing 175 n n N6 C33 KQV sing 176 n n N6 C36 KQV sing 177 n n C32 C33 KQV sing 178 n n C32 C31 KQV sing 179 n n C31 C30 KQV sing 180 n n C31 N2 KQV sing 181 n n O8 C6 KQV doub 182 n n C36 C7 KQV sing 183 n n N1 C6 KQV sing 184 n n N1 C7 KQV sing 185 n n C6 C5 KQV sing 186 n n C7 C8 KQV sing 187 n n O1 P KQV doub 188 n n C30 C29 KQV sing 189 n n C5 N KQV sing 190 n y C5 C37 KQV doub 191 n y N C4 KQV sing 192 n y C37 C3 KQV sing 193 n y C4 C3 KQV doub 194 n y C4 C38 KQV sing 195 n y C3 C2 KQV sing 196 n y C38 C39 KQV doub 197 n y N2 C8 KQV sing 198 n n N2 C9 KQV sing 199 n n C2 C1 KQV doub 200 n y C8 O7 KQV doub 201 n n C39 C1 KQV sing 202 n y C1 C KQV sing 203 n n F C KQV sing 204 n n P O2 KQV sing 205 n n P C KQV sing 206 n n P O KQV sing 207 n n C29 C9 KQV sing 208 n n C F1 KQV sing 209 n n C9 C10 KQV sing 210 n n C19 C20 KQV doub 211 n y C19 C18 KQV sing 212 n y C20 C21 KQV sing 213 n y O5 C10 KQV doub 214 n n C10 N3 KQV sing 215 n n C18 C17 KQV doub 216 n y C21 C22 KQV doub 217 n y N3 C11 KQV sing 218 n n C17 C22 KQV sing 219 n y C17 C16 KQV sing 220 n n N5 C16 KQV sing 221 n n N5 C15 KQV sing 222 n n C11 C15 KQV sing 223 n n C11 C12 KQV sing 224 n n C16 C23 KQV sing 225 n n C15 O4 KQV doub 226 n n C13 C12 KQV sing 227 n n C13 C14 KQV sing 228 n n C23 C28 KQV doub 229 n y C23 C24 KQV sing 230 n y C28 C27 KQV sing 231 n y C24 C25 KQV doub 232 n y N4 C14 KQV sing 233 n n C14 O3 KQV doub 234 n n C27 C26 KQV doub 235 n y C25 C26 KQV sing 236 n y C2 H1 KQV sing 237 n n C7 H2 KQV sing 238 n n N1 H3 KQV sing 239 n n N H4 KQV sing 240 n n O H5 KQV sing 241 n n C37 H6 KQV sing 242 n n C38 H7 KQV sing 243 n n C39 H8 KQV sing 244 n n O2 H9 KQV sing 245 n n C36 H10 KQV sing 246 n n C36 H11 KQV sing 247 n n C35 H12 KQV sing 248 n n C35 H13 KQV sing 249 n n C35 H14 KQV sing 250 n n C33 H15 KQV sing 251 n n C33 H16 KQV sing 252 n n C32 H17 KQV sing 253 n n C32 H18 KQV sing 254 n n C31 H19 KQV sing 255 n n C30 H20 KQV sing 256 n n C30 H21 KQV sing 257 n n C29 H22 KQV sing 258 n n C29 H23 KQV sing 259 n n C9 H24 KQV sing 260 n n N3 H25 KQV sing 261 n n C11 H26 KQV sing 262 n n C12 H27 KQV sing 263 n n C12 H28 KQV sing 264 n n C13 H29 KQV sing 265 n n C13 H30 KQV sing 266 n n N4 H31 KQV sing 267 n n N4 H32 KQV sing 268 n n N5 H33 KQV sing 269 n n C16 H34 KQV sing 270 n n C28 H35 KQV sing 271 n n C27 H36 KQV sing 272 n n C26 H37 KQV sing 273 n n C25 H38 KQV sing 274 n n C24 H39 KQV sing 275 n n C22 H40 KQV sing 276 n n C21 H41 KQV sing 277 n n C20 H42 KQV sing 278 n n C19 H43 KQV sing 279 n n C18 H44 KQV sing 280 n n # _atom_sites.entry_id 6NUQ _atom_sites.fract_transf_matrix[1][1] 0.011878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KQV A 1 701 701 KQV 109 . C 3 HOH A 1 801 29 HOH HOH . C 3 HOH A 2 802 23 HOH HOH . C 3 HOH A 3 803 7 HOH HOH . C 3 HOH A 4 804 20 HOH HOH . C 3 HOH A 5 805 2 HOH HOH . C 3 HOH A 6 806 26 HOH HOH . C 3 HOH A 7 807 22 HOH HOH . C 3 HOH A 8 808 6 HOH HOH . C 3 HOH A 9 809 5 HOH HOH . C 3 HOH A 10 810 8 HOH HOH . C 3 HOH A 11 811 16 HOH HOH . C 3 HOH A 12 812 24 HOH HOH . C 3 HOH A 13 813 27 HOH HOH . C 3 HOH A 14 814 21 HOH HOH . C 3 HOH A 15 815 13 HOH HOH . C 3 HOH A 16 816 15 HOH HOH . C 3 HOH A 17 817 28 HOH HOH . C 3 HOH A 18 818 11 HOH HOH . C 3 HOH A 19 819 10 HOH HOH . C 3 HOH A 20 820 17 HOH HOH . C 3 HOH A 21 821 9 HOH HOH . C 3 HOH A 22 822 31 HOH HOH . C 3 HOH A 23 823 1 HOH HOH . C 3 HOH A 24 824 12 HOH HOH . C 3 HOH A 25 825 4 HOH HOH . C 3 HOH A 26 826 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KQV . . . B 2 10.974 47.452 -1.251 1 96.57 ? C1 KQV 701 A 1 HETATM 2 C C2 KQV . . . B 2 10.493 48.723 -1.552 1 95.79 ? C2 KQV 701 A 1 HETATM 3 C C3 KQV . . . B 2 11.36 49.754 -1.909 1 94.84 ? C3 KQV 701 A 1 HETATM 4 C C4 KQV . . . B 2 12.739 49.481 -1.968 1 94.44 ? C4 KQV 701 A 1 HETATM 5 C C5 KQV . . . B 2 12.453 51.662 -2.441 1 94.31 ? C5 KQV 701 A 1 HETATM 6 C C6 KQV . . . B 2 12.77 53.083 -2.735 1 94.03 ? C6 KQV 701 A 1 HETATM 7 C C7 KQV . . . B 2 11.793 55.37 -2.71 1 94.42 ? C7 KQV 701 A 1 HETATM 8 C C8 KQV . . . B 2 12.591 55.883 -1.479 1 94.99 ? C8 KQV 701 A 1 HETATM 9 O O1 KQV . . . B 2 10.824 44.68 -2.662 1 99.18 ? O1 KQV 701 A 1 HETATM 10 N N1 KQV . . . B 2 11.716 53.919 -2.757 1 93.92 ? N1 KQV 701 A 1 HETATM 11 N N2 KQV . . . B 2 13.303 57.175 -1.63 1 95.02 ? N2 KQV 701 A 1 HETATM 12 N N KQV . . . B 2 13.392 50.662 -2.294 1 94.33 ? N KQV 701 A 1 HETATM 13 C C KQV . . . B 2 9.927 46.431 -0.752 1 98.59 ? C KQV 701 A 1 HETATM 14 O O KQV . . . B 2 11.56 44.288 -0.297 1 97.99 ? O KQV 701 A 1 HETATM 15 O O8 KQV . . . B 2 13.931 53.449 -2.929 1 93.98 ? O8 KQV 701 A 1 HETATM 16 C C37 KQV . . . B 2 11.202 51.144 -2.221 1 94.28 ? C37 KQV 701 A 1 HETATM 17 C C38 KQV . . . B 2 13.245 48.21 -1.7 1 94.47 ? C38 KQV 701 A 1 HETATM 18 C C39 KQV . . . B 2 12.348 47.208 -1.342 1 95.46 ? C39 KQV 701 A 1 HETATM 19 F F1 KQV . . . B 2 9.651 46.58 0.565 1 99.43 ? F1 KQV 701 A 1 HETATM 20 P P KQV . . . B 2 10.354 44.632 -1.191 1 98.92 ? P KQV 701 A 1 HETATM 21 O O2 KQV . . . B 2 9.193 43.714 -0.97 1 99.69 ? O2 KQV 701 A 1 HETATM 22 F F KQV . . . B 2 8.726 46.767 -1.255 1 99.57 ? F KQV 701 A 1 HETATM 23 C C36 KQV . . . B 2 10.498 56.241 -2.865 1 94.68 ? C36 KQV 701 A 1 HETATM 24 N N6 KQV . . . B 2 10.715 57.372 -3.871 1 95.75 ? N6 KQV 701 A 1 HETATM 25 C C34 KQV . . . B 2 10.39 57.27 -5.189 1 97.28 ? C34 KQV 701 A 1 HETATM 26 O O6 KQV . . . B 2 9.419 57.857 -5.64 1 97.84 ? O6 KQV 701 A 1 HETATM 27 C C35 KQV . . . B 2 11.272 56.442 -6.077 1 97.63 ? C35 KQV 701 A 1 HETATM 28 C C33 KQV . . . B 2 11.217 58.647 -3.341 1 95.16 ? C33 KQV 701 A 1 HETATM 29 C C32 KQV . . . B 2 12.714 58.851 -3.446 1 95.07 ? C32 KQV 701 A 1 HETATM 30 C C31 KQV . . . B 2 13.689 57.781 -2.925 1 95.19 ? C31 KQV 701 A 1 HETATM 31 O O7 KQV . . . B 2 12.626 55.251 -0.437 1 95.24 ? O7 KQV 701 A 1 HETATM 32 C C30 KQV . . . B 2 15.113 58.265 -2.644 1 95.22 ? C30 KQV 701 A 1 HETATM 33 C C29 KQV . . . B 2 15.096 58.609 -1.15 1 94.69 ? C29 KQV 701 A 1 HETATM 34 C C9 KQV . . . B 2 14.23 57.505 -0.544 1 94 ? C9 KQV 701 A 1 HETATM 35 C C10 KQV . . . B 2 13.522 57.977 0.724 1 92.26 ? C10 KQV 701 A 1 HETATM 36 O O5 KQV . . . B 2 12.45 58.575 0.667 1 92.03 ? O5 KQV 701 A 1 HETATM 37 N N3 KQV . . . B 2 14.149 57.679 1.869 1 90.77 ? N3 KQV 701 A 1 HETATM 38 C C11 KQV . . . B 2 13.579 57.913 3.187 1 88.84 ? C11 KQV 701 A 1 HETATM 39 C C12 KQV . . . B 2 14.252 57.02 4.23 1 88.17 ? C12 KQV 701 A 1 HETATM 40 C C13 KQV . . . B 2 13.921 55.532 4.063 1 87.94 ? C13 KQV 701 A 1 HETATM 41 C C14 KQV . . . B 2 14.649 54.605 5.01 1 87.37 ? C14 KQV 701 A 1 HETATM 42 O O3 KQV . . . B 2 15.372 55.045 5.91 1 86.7 ? O3 KQV 701 A 1 HETATM 43 N N4 KQV . . . B 2 14.463 53.31 4.811 1 87.38 ? N4 KQV 701 A 1 HETATM 44 C C15 KQV . . . B 2 13.647 59.379 3.62 1 88.18 ? C15 KQV 701 A 1 HETATM 45 O O4 KQV . . . B 2 12.849 59.812 4.45 1 87.83 ? O4 KQV 701 A 1 HETATM 46 N N5 KQV . . . B 2 14.611 60.127 3.065 1 88.37 ? N5 KQV 701 A 1 HETATM 47 C C16 KQV . . . B 2 14.843 61.525 3.452 1 88.92 ? C16 KQV 701 A 1 HETATM 48 C C23 KQV . . . B 2 16.166 61.74 4.18 1 89.2 ? C23 KQV 701 A 1 HETATM 49 C C28 KQV . . . B 2 16.978 60.664 4.525 1 89.31 ? C28 KQV 701 A 1 HETATM 50 C C27 KQV . . . B 2 18.143 60.862 5.253 1 88.42 ? C27 KQV 701 A 1 HETATM 51 C C26 KQV . . . B 2 18.512 62.136 5.642 1 87.95 ? C26 KQV 701 A 1 HETATM 52 C C25 KQV . . . B 2 17.721 63.214 5.294 1 87.77 ? C25 KQV 701 A 1 HETATM 53 C C24 KQV . . . B 2 16.557 63.019 4.564 1 88.41 ? C24 KQV 701 A 1 HETATM 54 C C17 KQV . . . B 2 14.617 62.493 2.298 1 89.02 ? C17 KQV 701 A 1 HETATM 55 C C22 KQV . . . B 2 13.547 63.379 2.328 1 88.89 ? C22 KQV 701 A 1 HETATM 56 C C21 KQV . . . B 2 13.359 64.295 1.303 1 89.1 ? C21 KQV 701 A 1 HETATM 57 C C20 KQV . . . B 2 14.237 64.335 0.236 1 89.3 ? C20 KQV 701 A 1 HETATM 58 C C19 KQV . . . B 2 15.303 63.456 0.195 1 89.27 ? C19 KQV 701 A 1 HETATM 59 C C18 KQV . . . B 2 15.49 62.539 1.218 1 89.23 ? C18 KQV 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 59 #