data_6NV1
#
_model_server_result.job_id            zzDsaXEJ57AIarM_7tvBuA 
_model_server_result.datetime_utc      '2024-12-27 01:47:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":101}' 
#
_entry.id    6NV1 
#
_exptl.entry_id    6NV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NV1 
_cell.length_a            49.806 
_cell.length_b            49.95 
_cell.length_c            75.029 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,U,V,W,X 1 1 
E,F,G,H,N,O,P,Q,R,S,T,Y,Z,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 R N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C LEU 26 B LEU 46 1_555 B N NH2 27 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 C C LEU 26 C LEU 46 1_555 C N NH2 27 C NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 D C LEU 26 D LEU 46 1_555 D N NH2 27 D NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 E C LEU 26 E LEU 46 1_555 E N NH2 27 E NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 F C LEU 26 F LEU 46 1_555 F N NH2 27 F NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 G C LEU 26 G LEU 46 1_555 G N NH2 27 G NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 H C LEU 26 H LEU 46 1_555 H N NH2 27 H NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 180 n n 
C10 C9 OLC doub 181 n n 
C10 C11 OLC sing 182 n n 
C9 C8 OLC sing 183 n n 
C17 C16 OLC sing 184 z n 
C11 C12 OLC sing 185 n n 
C8 C7 OLC sing 186 n n 
C24 C22 OLC sing 187 n n 
C24 O25 OLC sing 188 n n 
C16 C15 OLC sing 189 n n 
C12 C13 OLC sing 190 n n 
C7 C6 OLC sing 191 n n 
C15 C14 OLC sing 192 n n 
C13 C14 OLC sing 193 n n 
C6 C5 OLC sing 194 n n 
C5 C4 OLC sing 195 n n 
C4 C3 OLC sing 196 n n 
C3 C2 OLC sing 197 n n 
C2 C1 OLC sing 198 n n 
C21 C22 OLC sing 199 n n 
C21 O20 OLC sing 200 n n 
C1 O19 OLC doub 201 n n 
C1 O20 OLC sing 202 n n 
C22 O23 OLC sing 203 n n 
C18 H18 OLC sing 204 n n 
C18 H18A OLC sing 205 n n 
C18 H18B OLC sing 206 n n 
C10 H10 OLC sing 207 n n 
C9 H9 OLC sing 208 n n 
C17 H17 OLC sing 209 n n 
C17 H17A OLC sing 210 n n 
C11 H11 OLC sing 211 n n 
C11 H11A OLC sing 212 n n 
C8 H8 OLC sing 213 n n 
C8 H8A OLC sing 214 n n 
C24 H24 OLC sing 215 n n 
C24 H24A OLC sing 216 n n 
C16 H16 OLC sing 217 n n 
C16 H16A OLC sing 218 n n 
C12 H12 OLC sing 219 n n 
C12 H12A OLC sing 220 n n 
C7 H7 OLC sing 221 n n 
C7 H7A OLC sing 222 n n 
C15 H15 OLC sing 223 n n 
C15 H15A OLC sing 224 n n 
C13 H13 OLC sing 225 n n 
C13 H13A OLC sing 226 n n 
C6 H6 OLC sing 227 n n 
C6 H6A OLC sing 228 n n 
C14 H14 OLC sing 229 n n 
C14 H14A OLC sing 230 n n 
C5 H5 OLC sing 231 n n 
C5 H5A OLC sing 232 n n 
C4 H4 OLC sing 233 n n 
C4 H4A OLC sing 234 n n 
C3 H3 OLC sing 235 n n 
C3 H3A OLC sing 236 n n 
C2 H2 OLC sing 237 n n 
C2 H2A OLC sing 238 n n 
C21 H21 OLC sing 239 n n 
C21 H21A OLC sing 240 n n 
C22 H22 OLC sing 241 n n 
O25 HO25 OLC sing 242 n n 
O23 HO23 OLC sing 243 n n 
#
_atom_sites.entry_id                     6NV1 
_atom_sites.fract_transf_matrix[1][1]    0.020078 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 101 101 OLC OLC . 
J 3 E01 A 1 102 101 E01 E01 . 
K 2 OLC B 1 101 101 OLC OLC . 
L 4 CL B 1 102 1 CL CL . 
M 2 OLC D 1 101 101 OLC OLC . 
N 2 OLC E 1 101 101 OLC OLC . 
O 2 OLC E 1 102 101 OLC OLC . 
P 2 OLC F 1 101 101 OLC OLC . 
Q 3 E01 F 1 102 101 E01 E01 . 
R 2 OLC G 1 101 101 OLC OLC . 
S 2 OLC H 1 101 101 OLC OLC . 
T 4 CL H 1 102 2 CL CL . 
U 5 HOH A 1 201 30 HOH HOH . 
U 5 HOH A 2 202 27 HOH HOH . 
U 5 HOH A 3 203 11 HOH HOH . 
U 5 HOH A 4 204 8 HOH HOH . 
U 5 HOH A 5 205 20 HOH HOH . 
V 5 HOH B 1 201 3 HOH HOH . 
V 5 HOH B 2 202 29 HOH HOH . 
V 5 HOH B 3 203 16 HOH HOH . 
W 5 HOH C 1 101 21 HOH HOH . 
W 5 HOH C 2 102 2 HOH HOH . 
W 5 HOH C 3 103 26 HOH HOH . 
X 5 HOH D 1 201 1 HOH HOH . 
X 5 HOH D 2 202 18 HOH HOH . 
X 5 HOH D 3 203 22 HOH HOH . 
Y 5 HOH E 1 201 5 HOH HOH . 
Y 5 HOH E 2 202 23 HOH HOH . 
Z 5 HOH F 1 201 25 HOH HOH . 
Z 5 HOH F 2 202 28 HOH HOH . 
Z 5 HOH F 3 203 13 HOH HOH . 
Z 5 HOH F 4 204 24 HOH HOH . 
Z 5 HOH F 5 205 15 HOH HOH . 
Z 5 HOH F 6 206 9 HOH HOH . 
AA 5 HOH G 1 201 14 HOH HOH . 
AA 5 HOH G 2 202 7 HOH HOH . 
AA 5 HOH G 3 203 10 HOH HOH . 
AA 5 HOH G 4 204 19 HOH HOH . 
BA 5 HOH H 1 201 6 HOH HOH . 
BA 5 HOH H 2 202 17 HOH HOH . 
BA 5 HOH H 3 203 4 HOH HOH . 
BA 5 HOH H 4 204 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . S 2 -37.095 -9.075 18.197 1 53.95 ? C18 OLC 101 H 1 
HETATM 2 C C10 OLC . . . S 2 -34.717 -11.948 9.165 1 50.07 ? C10 OLC 101 H 1 
HETATM 3 C C9 OLC . . . S 2 -34.696 -12.224 7.857 1 49.12 ? C9 OLC 101 H 1 
HETATM 4 C C17 OLC . . . S 2 -37.463 -9.508 16.793 1 65.02 ? C17 OLC 101 H 1 
HETATM 5 C C11 OLC . . . S 2 -35.275 -10.68 9.77 1 60.79 ? C11 OLC 101 H 1 
HETATM 6 C C8 OLC . . . S 2 -35.179 -11.332 6.736 1 53.59 ? C8 OLC 101 H 1 
HETATM 7 C C24 OLC . . . S 2 -28.313 -7.399 8.15 1 64.63 ? C24 OLC 101 H 1 
HETATM 8 C C16 OLC . . . S 2 -36.443 -9.043 15.742 1 75.53 ? C16 OLC 101 H 1 
HETATM 9 C C12 OLC . . . S 2 -34.833 -10.623 11.234 1 68.1 ? C12 OLC 101 H 1 
HETATM 10 C C7 OLC . . . S 2 -34.685 -11.951 5.43 1 49.92 ? C7 OLC 101 H 1 
HETATM 11 C C15 OLC . . . S 2 -36.73 -9.737 14.409 1 75.6 ? C15 OLC 101 H 1 
HETATM 12 C C13 OLC . . . S 2 -35.704 -9.713 12.101 1 68.93 ? C13 OLC 101 H 1 
HETATM 13 C C6 OLC . . . S 2 -33.159 -11.887 5.304 1 53.43 ? C6 OLC 101 H 1 
HETATM 14 C C14 OLC . . . S 2 -35.535 -10.158 13.549 1 73.97 ? C14 OLC 101 H 1 
HETATM 15 C C5 OLC . . . S 2 -32.681 -11.187 4.027 1 63.79 ? C5 OLC 101 H 1 
HETATM 16 C C4 OLC . . . S 2 -31.271 -10.569 4.1 1 63.81 ? C4 OLC 101 H 1 
HETATM 17 C C3 OLC . . . S 2 -30.091 -11.516 4.361 1 62.94 ? C3 OLC 101 H 1 
HETATM 18 C C2 OLC . . . S 2 -28.725 -10.816 4.229 1 68.51 ? C2 OLC 101 H 1 
HETATM 19 C C21 OLC . . . S 2 -28.524 -9.846 7.789 1 62.83 ? C21 OLC 101 H 1 
HETATM 20 C C1 OLC . . . S 2 -28.515 -9.735 5.279 1 70.93 ? C1 OLC 101 H 1 
HETATM 21 C C22 OLC . . . S 2 -27.838 -8.767 8.621 1 68.67 ? C22 OLC 101 H 1 
HETATM 22 O O19 OLC . . . S 2 -28.907 -8.591 5.079 1 62.07 ? O19 OLC 101 H 1 
HETATM 23 O O25 OLC . . . S 2 -27.253 -6.795 7.405 1 62.38 ? O25 OLC 101 H 1 
HETATM 24 O O23 OLC . . . S 2 -28.157 -8.906 10.009 1 65.05 ? O23 OLC 101 H 1 
HETATM 25 O O20 OLC . . . S 2 -27.843 -10.03 6.544 1 68.13 ? O20 OLC 101 H 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#