data_6NV1
#
_model_server_result.job_id            NLlMlXAvPb8TxmsCFCcLTQ 
_model_server_result.datetime_utc      '2024-12-27 01:52:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":102}' 
#
_entry.id    6NV1 
#
_exptl.entry_id    6NV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.366 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(1r,1'S,3'S,5'S,7'S)-spiro[cyclohexane-1,2'-tricyclo[3.3.1.1~3,7~]decan]-4-amine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NV1 
_cell.length_a            49.806 
_cell.length_b            49.95 
_cell.length_c            75.029 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,U,V,W,X 1 1 
E,F,G,H,N,O,P,Q,R,S,T,Y,Z,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C LEU 26 B LEU 46 1_555 B N NH2 27 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 C C LEU 26 C LEU 46 1_555 C N NH2 27 C NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 D C LEU 26 D LEU 46 1_555 D N NH2 27 D NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 E C LEU 26 E LEU 46 1_555 E N NH2 27 E NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 F C LEU 26 F LEU 46 1_555 F N NH2 27 F NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 G C LEU 26 G LEU 46 1_555 G N NH2 27 G NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 H C LEU 26 H LEU 46 1_555 H N NH2 27 H NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C15 H25 N' 
_chem_comp.formula_weight    219.366 
_chem_comp.id                E01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(1r,1'S,3'S,5'S,7'S)-spiro[cyclohexane-1,2'-tricyclo[3.3.1.1~3,7~]decan]-4-amine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C11 E01 sing 60 n n 
C15 C12 E01 sing 61 n n 
C11 C10 E01 sing 62 n n 
C11 C4 E01 sing 63 n n 
C10 C9 E01 sing 64 n n 
C6 C5 E01 sing 65 n n 
C6 C1 E01 sing 66 n n 
N1 C1 E01 sing 67 n n 
C12 C13 E01 sing 68 n n 
C12 C14 E01 sing 69 n n 
C4 C5 E01 sing 70 n n 
C4 C3 E01 sing 71 n n 
C4 C7 E01 sing 72 n n 
C13 C9 E01 sing 73 n n 
C3 C2 E01 sing 74 n n 
C9 C8 E01 sing 75 n n 
C1 C2 E01 sing 76 n n 
C14 C7 E01 sing 77 n n 
C7 C8 E01 sing 78 n n 
C1 H1 E01 sing 79 n n 
C2 H2B E01 sing 80 n n 
C2 H2A E01 sing 81 n n 
C3 H3B E01 sing 82 n n 
C3 H3A E01 sing 83 n n 
C5 H5B E01 sing 84 n n 
C5 H5A E01 sing 85 n n 
C6 H6B E01 sing 86 n n 
C6 H6A E01 sing 87 n n 
C14 H14A E01 sing 88 n n 
C14 H14B E01 sing 89 n n 
C15 H15A E01 sing 90 n n 
C15 H15B E01 sing 91 n n 
C12 H12 E01 sing 92 n n 
C11 H11 E01 sing 93 n n 
C10 H10B E01 sing 94 n n 
C10 H10A E01 sing 95 n n 
C7 H7 E01 sing 96 n n 
C8 H8A E01 sing 97 n n 
C8 H8B E01 sing 98 n n 
C9 H9 E01 sing 99 n n 
C13 H13A E01 sing 100 n n 
C13 H13B E01 sing 101 n n 
N1 H1B E01 sing 102 n n 
N1 H1A E01 sing 103 n n 
#
_atom_sites.entry_id                     6NV1 
_atom_sites.fract_transf_matrix[1][1]    0.020078 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 101 101 OLC OLC . 
J 3 E01 A 1 102 101 E01 E01 . 
K 2 OLC B 1 101 101 OLC OLC . 
L 4 CL B 1 102 1 CL CL . 
M 2 OLC D 1 101 101 OLC OLC . 
N 2 OLC E 1 101 101 OLC OLC . 
O 2 OLC E 1 102 101 OLC OLC . 
P 2 OLC F 1 101 101 OLC OLC . 
Q 3 E01 F 1 102 101 E01 E01 . 
R 2 OLC G 1 101 101 OLC OLC . 
S 2 OLC H 1 101 101 OLC OLC . 
T 4 CL H 1 102 2 CL CL . 
U 5 HOH A 1 201 30 HOH HOH . 
U 5 HOH A 2 202 27 HOH HOH . 
U 5 HOH A 3 203 11 HOH HOH . 
U 5 HOH A 4 204 8 HOH HOH . 
U 5 HOH A 5 205 20 HOH HOH . 
V 5 HOH B 1 201 3 HOH HOH . 
V 5 HOH B 2 202 29 HOH HOH . 
V 5 HOH B 3 203 16 HOH HOH . 
W 5 HOH C 1 101 21 HOH HOH . 
W 5 HOH C 2 102 2 HOH HOH . 
W 5 HOH C 3 103 26 HOH HOH . 
X 5 HOH D 1 201 1 HOH HOH . 
X 5 HOH D 2 202 18 HOH HOH . 
X 5 HOH D 3 203 22 HOH HOH . 
Y 5 HOH E 1 201 5 HOH HOH . 
Y 5 HOH E 2 202 23 HOH HOH . 
Z 5 HOH F 1 201 25 HOH HOH . 
Z 5 HOH F 2 202 28 HOH HOH . 
Z 5 HOH F 3 203 13 HOH HOH . 
Z 5 HOH F 4 204 24 HOH HOH . 
Z 5 HOH F 5 205 15 HOH HOH . 
Z 5 HOH F 6 206 9 HOH HOH . 
AA 5 HOH G 1 201 14 HOH HOH . 
AA 5 HOH G 2 202 7 HOH HOH . 
AA 5 HOH G 3 203 10 HOH HOH . 
AA 5 HOH G 4 204 19 HOH HOH . 
BA 5 HOH H 1 201 6 HOH HOH . 
BA 5 HOH H 2 202 17 HOH HOH . 
BA 5 HOH H 3 203 4 HOH HOH . 
BA 5 HOH H 4 204 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 E01 . . . J 3 1.096 3.35 14.391 1 54.12 ? C1 E01 102 A 1 
HETATM 2 C C2 E01 . . . J 3 1.548 2.17 13.553 1 49.83 ? C2 E01 102 A 1 
HETATM 3 C C3 E01 . . . J 3 0.915 2.258 12.174 1 50.68 ? C3 E01 102 A 1 
HETATM 4 C C4 E01 . . . J 3 1.302 3.527 11.436 1 50.11 ? C4 E01 102 A 1 
HETATM 5 C C5 E01 . . . J 3 0.932 4.747 12.288 1 51.37 ? C5 E01 102 A 1 
HETATM 6 C C6 E01 . . . J 3 1.53 4.643 13.695 1 54.62 ? C6 E01 102 A 1 
HETATM 7 C C14 E01 . . . J 3 0.893 4.785 9.304 1 43.7 ? C14 E01 102 A 1 
HETATM 8 C C15 E01 . . . J 3 3.166 4.751 10.292 1 44.8 ? C15 E01 102 A 1 
HETATM 9 C C12 E01 . . . J 3 2.382 4.772 8.982 1 47.11 ? C12 E01 102 A 1 
HETATM 10 C C11 E01 . . . J 3 2.791 3.509 11.106 1 43.95 ? C11 E01 102 A 1 
HETATM 11 C C10 E01 . . . J 3 3.134 2.261 10.296 1 41.78 ? C10 E01 102 A 1 
HETATM 12 C C7 E01 . . . J 3 0.53 3.548 10.125 1 45.65 ? C7 E01 102 A 1 
HETATM 13 C C8 E01 . . . J 3 0.866 2.293 9.315 1 41.7 ? C8 E01 102 A 1 
HETATM 14 C C9 E01 . . . J 3 2.351 2.253 8.985 1 44.59 ? C9 E01 102 A 1 
HETATM 15 C C13 E01 . . . J 3 2.708 3.507 8.186 1 49.23 ? C13 E01 102 A 1 
HETATM 16 N N1 E01 . . . J 3 1.715 3.209 15.724 1 50.9 ? N1 E01 102 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           204 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#