data_6NVH # _model_server_result.job_id ueepb0nMyxRBY1qJOkguaQ _model_server_result.datetime_utc '2024-12-22 12:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6NVH # _exptl.entry_id 6NVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NVH _cell.length_a 64.127 _cell.length_b 64.127 _cell.length_c 181.924 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C23 _struct_conn.ptnr2_label_comp_id XL6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XL6 _struct_conn.ptnr2_auth_seq_id 803 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.822 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H24 Cl2 N4 O4' _chem_comp.formula_weight 491.367 _chem_comp.id XL6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 XL6 sing 380 n n C18 C19 XL6 doub 381 n y C18 C17 XL6 sing 382 n y CL2 C4 XL6 sing 383 n n C19 C14 XL6 sing 384 n y O2 C8 XL6 sing 385 n n O2 C5 XL6 sing 386 n n C17 C16 XL6 doub 387 n y C5 C4 XL6 doub 388 n y C5 C6 XL6 sing 389 n y C4 C3 XL6 sing 390 n y C14 N3 XL6 sing 391 n n C14 C15 XL6 doub 392 n y N2 C13 XL6 doub 393 n y N2 C12 XL6 sing 394 n y C6 C1 XL6 doub 395 n y C9 C3 XL6 sing 396 n n C9 O3 XL6 sing 397 n n C3 C2 XL6 doub 398 n y N3 C12 XL6 sing 399 n n C16 C15 XL6 sing 400 n y C13 C10 XL6 sing 401 n y C12 N1 XL6 doub 402 n y C15 N4 XL6 sing 403 n n C10 O3 XL6 sing 404 n n C10 C11 XL6 doub 405 n y N1 C11 XL6 sing 406 n y C2 C1 XL6 sing 407 n y C2 CL1 XL6 sing 408 n n C1 O1 XL6 sing 409 n n O1 C7 XL6 sing 410 n n N4 C21 XL6 sing 411 n n O4 C21 XL6 doub 412 n n C21 C22 XL6 sing 413 n n C22 C23 XL6 sing 414 n n C6 H1 XL6 sing 415 n n C7 H2 XL6 sing 416 n n C7 H3 XL6 sing 417 n n C7 H4 XL6 sing 418 n n C8 H5 XL6 sing 419 n n C8 H6 XL6 sing 420 n n C8 H7 XL6 sing 421 n n C9 H8 XL6 sing 422 n n C9 H9 XL6 sing 423 n n C11 H10 XL6 sing 424 n n C13 H11 XL6 sing 425 n n N3 H12 XL6 sing 426 n n C16 H13 XL6 sing 427 n n C17 H14 XL6 sing 428 n n C18 H15 XL6 sing 429 n n C20 H16 XL6 sing 430 n n C20 H17 XL6 sing 431 n n C20 H18 XL6 sing 432 n n N4 H19 XL6 sing 433 n n C22 H20 XL6 sing 434 n n C22 H21 XL6 sing 435 n n C23 H22 XL6 sing 436 n n C23 H23 XL6 sing 437 n n C23 H24 XL6 sing 438 n n # _atom_sites.entry_id 6NVH _atom_sites.fract_transf_matrix[1][1] 0.015594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 802 SO4 SO4 . C 2 SO4 A 1 802 803 SO4 SO4 . D 3 XL6 A 1 803 1 XL6 XL6 . E 4 HOH A 1 901 901 HOH HOH . E 4 HOH A 2 902 904 HOH HOH . E 4 HOH A 3 903 903 HOH HOH . E 4 HOH A 4 904 902 HOH HOH . E 4 HOH A 5 905 906 HOH HOH . E 4 HOH A 6 906 908 HOH HOH . E 4 HOH A 7 907 905 HOH HOH . E 4 HOH A 8 908 907 HOH HOH . E 4 HOH A 9 909 910 HOH HOH . E 4 HOH A 10 910 909 HOH HOH . E 4 HOH A 11 911 917 HOH HOH . E 4 HOH A 12 912 911 HOH HOH . E 4 HOH A 13 913 915 HOH HOH . E 4 HOH A 14 914 913 HOH HOH . E 4 HOH A 15 915 919 HOH HOH . E 4 HOH A 16 916 912 HOH HOH . E 4 HOH A 17 917 940 HOH HOH . E 4 HOH A 18 918 920 HOH HOH . E 4 HOH A 19 919 925 HOH HOH . E 4 HOH A 20 920 922 HOH HOH . E 4 HOH A 21 921 924 HOH HOH . E 4 HOH A 22 922 918 HOH HOH . E 4 HOH A 23 923 923 HOH HOH . E 4 HOH A 24 924 927 HOH HOH . E 4 HOH A 25 925 921 HOH HOH . E 4 HOH A 26 926 941 HOH HOH . E 4 HOH A 27 927 914 HOH HOH . E 4 HOH A 28 928 916 HOH HOH . E 4 HOH A 29 929 933 HOH HOH . E 4 HOH A 30 930 930 HOH HOH . E 4 HOH A 31 931 947 HOH HOH . E 4 HOH A 32 932 926 HOH HOH . E 4 HOH A 33 933 928 HOH HOH . E 4 HOH A 34 934 945 HOH HOH . E 4 HOH A 35 935 932 HOH HOH . E 4 HOH A 36 936 931 HOH HOH . E 4 HOH A 37 937 936 HOH HOH . E 4 HOH A 38 938 938 HOH HOH . E 4 HOH A 39 939 942 HOH HOH . E 4 HOH A 40 940 944 HOH HOH . E 4 HOH A 41 941 929 HOH HOH . E 4 HOH A 42 942 939 HOH HOH . E 4 HOH A 43 943 934 HOH HOH . E 4 HOH A 44 944 946 HOH HOH . E 4 HOH A 45 945 935 HOH HOH . E 4 HOH A 46 946 950 HOH HOH . E 4 HOH A 47 947 943 HOH HOH . E 4 HOH A 48 948 951 HOH HOH . E 4 HOH A 49 949 949 HOH HOH . E 4 HOH A 50 950 948 HOH HOH . E 4 HOH A 51 951 954 HOH HOH . E 4 HOH A 52 952 937 HOH HOH . E 4 HOH A 53 953 952 HOH HOH . E 4 HOH A 54 954 956 HOH HOH . E 4 HOH A 55 955 953 HOH HOH . E 4 HOH A 56 956 957 HOH HOH . E 4 HOH A 57 957 961 HOH HOH . E 4 HOH A 58 958 962 HOH HOH . E 4 HOH A 59 959 955 HOH HOH . E 4 HOH A 60 960 959 HOH HOH . E 4 HOH A 61 961 964 HOH HOH . E 4 HOH A 62 962 960 HOH HOH . E 4 HOH A 63 963 966 HOH HOH . E 4 HOH A 64 964 965 HOH HOH . E 4 HOH A 65 965 968 HOH HOH . E 4 HOH A 66 966 970 HOH HOH . E 4 HOH A 67 967 980 HOH HOH . E 4 HOH A 68 968 969 HOH HOH . E 4 HOH A 69 969 958 HOH HOH . E 4 HOH A 70 970 967 HOH HOH . E 4 HOH A 71 971 978 HOH HOH . E 4 HOH A 72 972 977 HOH HOH . E 4 HOH A 73 973 974 HOH HOH . E 4 HOH A 74 974 973 HOH HOH . E 4 HOH A 75 975 971 HOH HOH . E 4 HOH A 76 976 972 HOH HOH . E 4 HOH A 77 977 975 HOH HOH . E 4 HOH A 78 978 963 HOH HOH . E 4 HOH A 79 979 976 HOH HOH . E 4 HOH A 80 980 979 HOH HOH . E 4 HOH A 81 981 981 HOH HOH . E 4 HOH A 82 982 982 HOH HOH . E 4 HOH A 83 983 983 HOH HOH . E 4 HOH A 84 984 984 HOH HOH . E 4 HOH A 85 985 988 HOH HOH . E 4 HOH A 86 986 987 HOH HOH . E 4 HOH A 87 987 985 HOH HOH . E 4 HOH A 88 988 991 HOH HOH . E 4 HOH A 89 989 990 HOH HOH . E 4 HOH A 90 990 986 HOH HOH . E 4 HOH A 91 991 992 HOH HOH . E 4 HOH A 92 992 993 HOH HOH . E 4 HOH A 93 993 994 HOH HOH . E 4 HOH A 94 994 989 HOH HOH . E 4 HOH A 95 995 995 HOH HOH . E 4 HOH A 96 996 996 HOH HOH . E 4 HOH A 97 997 998 HOH HOH . E 4 HOH A 98 998 997 HOH HOH . E 4 HOH A 99 999 1001 HOH HOH . E 4 HOH A 100 1000 1000 HOH HOH . E 4 HOH A 101 1001 1003 HOH HOH . E 4 HOH A 102 1002 999 HOH HOH . E 4 HOH A 103 1003 1002 HOH HOH . E 4 HOH A 104 1004 1004 HOH HOH . E 4 HOH A 105 1005 1005 HOH HOH . E 4 HOH A 106 1006 1006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XL6 . . . D 3 2.741 -21.369 8.42 1 40.16 ? C1 XL6 803 A 1 HETATM 2 C C2 XL6 . . . D 3 3.422 -20.15 8.411 1 40.99 ? C2 XL6 803 A 1 HETATM 3 C C3 XL6 . . . D 3 4.569 -19.967 7.642 1 41.36 ? C3 XL6 803 A 1 HETATM 4 C C4 XL6 . . . D 3 4.995 -21.028 6.873 1 40.13 ? C4 XL6 803 A 1 HETATM 5 C C5 XL6 . . . D 3 4.337 -22.252 6.859 1 38.81 ? C5 XL6 803 A 1 HETATM 6 C C6 XL6 . . . D 3 3.198 -22.412 7.627 1 37.79 ? C6 XL6 803 A 1 HETATM 7 O O1 XL6 . . . D 3 1.631 -21.48 9.212 1 39.56 ? O1 XL6 803 A 1 HETATM 8 O O2 XL6 . . . D 3 4.858 -23.227 6.063 1 37.29 ? O2 XL6 803 A 1 HETATM 9 C C7 XL6 . . . D 3 0.86 -22.68 9.146 1 40.27 ? C7 XL6 803 A 1 HETATM 10 C C8 XL6 . . . D 3 4.726 -24.588 6.48 1 39.43 ? C8 XL6 803 A 1 HETATM 11 CL CL1 XL6 . . . D 3 2.877 -18.858 9.431 1 44.79 ? CL1 XL6 803 A 1 HETATM 12 CL CL2 XL6 . . . D 3 6.402 -20.817 5.902 1 42.36 ? CL2 XL6 803 A 1 HETATM 13 C C9 XL6 . . . D 3 5.338 -18.672 7.634 1 38.94 ? C9 XL6 803 A 1 HETATM 14 O O3 XL6 . . . D 3 6.475 -18.804 8.497 1 38.3 ? O3 XL6 803 A 1 HETATM 15 C C10 XL6 . . . D 3 7.593 -18.035 8.266 1 38.49 ? C10 XL6 803 A 1 HETATM 16 C C11 XL6 . . . D 3 8.824 -18.549 8.621 1 37.27 ? C11 XL6 803 A 1 HETATM 17 N N1 XL6 . . . D 3 9.955 -17.858 8.444 1 39.26 ? N1 XL6 803 A 1 HETATM 18 C C12 XL6 . . . D 3 9.824 -16.622 7.908 1 37.2 ? C12 XL6 803 A 1 HETATM 19 N N2 XL6 . . . D 3 8.66 -16.052 7.535 1 35.71 ? N2 XL6 803 A 1 HETATM 20 C C13 XL6 . . . D 3 7.544 -16.756 7.731 1 37.21 ? C13 XL6 803 A 1 HETATM 21 N N3 XL6 . . . D 3 10.957 -15.906 7.681 1 39.78 ? N3 XL6 803 A 1 HETATM 22 C C14 XL6 . . . D 3 11.097 -14.566 7.229 1 42.92 ? C14 XL6 803 A 1 HETATM 23 C C15 XL6 . . . D 3 11.633 -13.609 8.107 1 46.35 ? C15 XL6 803 A 1 HETATM 24 C C16 XL6 . . . D 3 11.781 -12.272 7.649 1 45.92 ? C16 XL6 803 A 1 HETATM 25 C C17 XL6 . . . D 3 11.36 -11.923 6.391 1 44.22 ? C17 XL6 803 A 1 HETATM 26 C C18 XL6 . . . D 3 10.82 -12.876 5.546 1 44.69 ? C18 XL6 803 A 1 HETATM 27 C C19 XL6 . . . D 3 10.683 -14.205 5.938 1 41.44 ? C19 XL6 803 A 1 HETATM 28 C C20 XL6 . . . D 3 10.092 -15.198 4.973 1 39.36 ? C20 XL6 803 A 1 HETATM 29 N N4 XL6 . . . D 3 12.09 -14.025 9.379 1 46.73 ? N4 XL6 803 A 1 HETATM 30 C C21 XL6 . . . D 3 11.958 -13.374 10.553 1 49.46 ? C21 XL6 803 A 1 HETATM 31 C C22 XL6 . . . D 3 12.592 -14.075 11.734 1 49.07 ? C22 XL6 803 A 1 HETATM 32 C C23 XL6 . . . D 3 12.194 -15.52 11.876 1 45.72 ? C23 XL6 803 A 1 HETATM 33 O O4 XL6 . . . D 3 11.387 -12.3 10.657 1 58.19 ? O4 XL6 803 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #